Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03270 and DZA65_RS03275 are separated by 65 nucleotides DZA65_RS03275 and DZA65_RS03280 are separated by 117 nucleotides
DZA65_RS03270: DZA65_RS03270 - DEAD/DEAH family ATP-dependent RNA helicase, at 692,918 to 694,804
_RS03270
DZA65_RS03275: DZA65_RS03275 - LLM class flavin-dependent oxidoreductase, at 694,870 to 695,889
_RS03275
DZA65_RS03280: DZA65_RS03280 - U32 family peptidase, at 696,007 to 696,885
_RS03280
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 694.429 kb on + strand, within DZA65_RS03270 at 694.472 kb on + strand, within DZA65_RS03270 at 694.792 kb on + strand at 694.795 kb on + strand at 694.795 kb on + strand at 694.795 kb on + strand at 694.796 kb on - strand at 694.796 kb on - strand at 694.796 kb on - strand at 694.796 kb on - strand at 694.805 kb on + strand at 694.853 kb on - strand at 694.867 kb on - strand at 694.867 kb on - strand at 694.867 kb on - strand at 694.867 kb on - strand at 694.954 kb on + strand at 694.955 kb on - strand at 695.053 kb on + strand, within DZA65_RS03275 at 695.066 kb on - strand, within DZA65_RS03275 at 695.066 kb on - strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.093 kb on + strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.094 kb on - strand, within DZA65_RS03275 at 695.155 kb on - strand at 695.155 kb on - strand, within DZA65_RS03275 at 695.155 kb on - strand, within DZA65_RS03275 at 695.235 kb on + strand, within DZA65_RS03275 at 695.235 kb on + strand, within DZA65_RS03275 at 695.235 kb on + strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.236 kb on - strand, within DZA65_RS03275 at 695.237 kb on + strand, within DZA65_RS03275 at 695.237 kb on + strand, within DZA65_RS03275 at 695.237 kb on + strand, within DZA65_RS03275 at 695.238 kb on - strand, within DZA65_RS03275 at 695.238 kb on - strand, within DZA65_RS03275 at 695.370 kb on - strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.459 kb on + strand, within DZA65_RS03275 at 695.460 kb on - strand, within DZA65_RS03275 at 695.588 kb on + strand, within DZA65_RS03275 at 695.599 kb on + strand, within DZA65_RS03275 at 695.600 kb on - strand, within DZA65_RS03275 at 695.600 kb on - strand, within DZA65_RS03275 at 695.600 kb on - strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.739 kb on + strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.740 kb on - strand, within DZA65_RS03275 at 695.890 kb on - strand at 695.890 kb on - strand at 695.935 kb on - strand at 695.953 kb on - strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.969 kb on - strand at 695.969 kb on - strand at 695.969 kb on - strand at 696.201 kb on + strand, within DZA65_RS03280 at 696.201 kb on + strand, within DZA65_RS03280 at 696.202 kb on - strand, within DZA65_RS03280 at 696.202 kb on - strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.203 kb on + strand, within DZA65_RS03280 at 696.204 kb on - strand at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.204 kb on - strand, within DZA65_RS03280 at 696.209 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.287 kb on + strand, within DZA65_RS03280 at 696.359 kb on + strand, within DZA65_RS03280 at 696.359 kb on + strand, within DZA65_RS03280 at 696.359 kb on + strand, within DZA65_RS03280 at 696.360 kb on - strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.380 kb on + strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.381 kb on - strand, within DZA65_RS03280 at 696.477 kb on + strand, within DZA65_RS03280 at 696.477 kb on + strand, within DZA65_RS03280 at 696.477 kb on + strand, within DZA65_RS03280 at 696.478 kb on - strand, within DZA65_RS03280 at 696.478 kb on - strand, within DZA65_RS03280 at 696.478 kb on - strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.519 kb on + strand, within DZA65_RS03280 at 696.520 kb on - strand, within DZA65_RS03280 at 696.520 kb on - strand at 696.521 kb on + strand, within DZA65_RS03280 at 696.521 kb on + strand, within DZA65_RS03280 at 696.521 kb on + strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.522 kb on - strand, within DZA65_RS03280 at 696.530 kb on + strand, within DZA65_RS03280 at 696.530 kb on + strand, within DZA65_RS03280 at 696.530 kb on + strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.531 kb on - strand, within DZA65_RS03280 at 696.582 kb on + strand, within DZA65_RS03280 at 696.635 kb on + strand, within DZA65_RS03280 at 696.635 kb on + strand, within DZA65_RS03280 at 696.635 kb on + strand, within DZA65_RS03280 at 696.636 kb on - strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.788 kb on + strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.789 kb on - strand, within DZA65_RS03280 at 696.792 kb on + strand at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.792 kb on + strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.793 kb on - strand, within DZA65_RS03280 at 696.795 kb on + strand, within DZA65_RS03280 at 696.796 kb on - strand, within DZA65_RS03280 at 696.825 kb on - strand at 696.854 kb on + strand at 696.855 kb on - strand at 696.855 kb on - strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.857 kb on + strand at 696.858 kb on - strand at 696.858 kb on - strand at 696.858 kb on - strand at 696.878 kb on + strand at 696.878 kb on + strand at 696.879 kb on - strand at 696.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 694,429 + DZA65_RS03270 0.80 -1.9 694,472 + DZA65_RS03270 0.82 +1.7 694,792 + -1.0 694,795 + -0.1 694,795 + +0.9 694,795 + -0.3 694,796 - -1.1 694,796 - +1.4 694,796 - -1.0 694,796 - +0.6 694,805 + +0.2 694,853 - -0.7 694,867 - +1.2 694,867 - +0.6 694,867 - -0.2 694,867 - -0.9 694,954 + -0.3 694,955 - +2.8 695,053 + DZA65_RS03275 0.18 +0.1 695,066 - DZA65_RS03275 0.19 +1.0 695,066 - DZA65_RS03275 0.19 +0.4 695,093 + DZA65_RS03275 0.22 +0.4 695,093 + DZA65_RS03275 0.22 -0.4 695,093 + DZA65_RS03275 0.22 +0.2 695,093 + DZA65_RS03275 0.22 -0.0 695,094 - DZA65_RS03275 0.22 -0.3 695,094 - DZA65_RS03275 0.22 -0.6 695,094 - DZA65_RS03275 0.22 -0.1 695,094 - DZA65_RS03275 0.22 +1.2 695,094 - DZA65_RS03275 0.22 -0.1 695,155 - +0.3 695,155 - DZA65_RS03275 0.28 +0.0 695,155 - DZA65_RS03275 0.28 +1.2 695,235 + DZA65_RS03275 0.36 +0.2 695,235 + DZA65_RS03275 0.36 +2.0 695,235 + DZA65_RS03275 0.36 +0.0 695,236 - DZA65_RS03275 0.36 +0.7 695,236 - DZA65_RS03275 0.36 +2.5 695,236 - DZA65_RS03275 0.36 -1.7 695,236 - DZA65_RS03275 0.36 +0.7 695,236 - DZA65_RS03275 0.36 -1.9 695,237 + DZA65_RS03275 0.36 +0.9 695,237 + DZA65_RS03275 0.36 -0.1 695,237 + DZA65_RS03275 0.36 +1.2 695,238 - DZA65_RS03275 0.36 +0.7 695,238 - DZA65_RS03275 0.36 +0.7 695,370 - DZA65_RS03275 0.49 +1.5 695,459 + DZA65_RS03275 0.58 +0.7 695,459 + DZA65_RS03275 0.58 +0.9 695,459 + DZA65_RS03275 0.58 +3.0 695,459 + DZA65_RS03275 0.58 +2.0 695,460 - DZA65_RS03275 0.58 +0.3 695,588 + DZA65_RS03275 0.70 +0.7 695,599 + DZA65_RS03275 0.71 -0.5 695,600 - DZA65_RS03275 0.72 +0.4 695,600 - DZA65_RS03275 0.72 -0.9 695,600 - DZA65_RS03275 0.72 -1.7 695,739 + DZA65_RS03275 0.85 +0.7 695,739 + -0.3 695,739 + DZA65_RS03275 0.85 +0.2 695,739 + DZA65_RS03275 0.85 -1.3 695,739 + DZA65_RS03275 0.85 -0.2 695,739 + DZA65_RS03275 0.85 -2.1 695,740 - DZA65_RS03275 0.85 +1.2 695,740 - DZA65_RS03275 0.85 +0.3 695,740 - DZA65_RS03275 0.85 +1.0 695,740 - DZA65_RS03275 0.85 +0.7 695,740 - DZA65_RS03275 0.85 -0.1 695,890 - -1.3 695,890 - +1.5 695,935 - +1.3 695,953 - +0.0 695,962 + -0.9 695,962 + +2.0 695,968 + -0.8 695,968 + +0.5 695,969 - +0.1 695,969 - +0.2 695,969 - -0.3 696,201 + DZA65_RS03280 0.22 +1.7 696,201 + DZA65_RS03280 0.22 +0.7 696,202 - DZA65_RS03280 0.22 +0.4 696,202 - DZA65_RS03280 0.22 +0.3 696,203 + DZA65_RS03280 0.22 +0.2 696,203 + DZA65_RS03280 0.22 +0.4 696,203 + DZA65_RS03280 0.22 -1.5 696,203 + DZA65_RS03280 0.22 -0.9 696,203 + DZA65_RS03280 0.22 -0.3 696,204 - -0.1 696,204 - DZA65_RS03280 0.22 +0.2 696,204 - DZA65_RS03280 0.22 -0.9 696,204 - DZA65_RS03280 0.22 -0.8 696,204 - DZA65_RS03280 0.22 -0.8 696,204 - DZA65_RS03280 0.22 +0.4 696,204 - DZA65_RS03280 0.22 +0.7 696,204 - DZA65_RS03280 0.22 +0.4 696,204 - DZA65_RS03280 0.22 -0.3 696,204 - DZA65_RS03280 0.22 -0.1 696,209 + DZA65_RS03280 0.23 +0.4 696,287 + DZA65_RS03280 0.32 -1.3 696,287 + DZA65_RS03280 0.32 +0.7 696,287 + DZA65_RS03280 0.32 -2.8 696,287 + DZA65_RS03280 0.32 +0.4 696,287 + DZA65_RS03280 0.32 +0.1 696,359 + DZA65_RS03280 0.40 -2.2 696,359 + DZA65_RS03280 0.40 -0.5 696,359 + DZA65_RS03280 0.40 -2.3 696,360 - DZA65_RS03280 0.40 +1.0 696,380 + DZA65_RS03280 0.42 +1.1 696,380 + DZA65_RS03280 0.42 -0.3 696,380 + DZA65_RS03280 0.42 -0.9 696,380 + DZA65_RS03280 0.42 +1.7 696,380 + DZA65_RS03280 0.42 +0.0 696,380 + DZA65_RS03280 0.42 +0.5 696,380 + DZA65_RS03280 0.42 +0.3 696,380 + DZA65_RS03280 0.42 +2.2 696,380 + DZA65_RS03280 0.42 -0.5 696,380 + DZA65_RS03280 0.42 +1.2 696,381 - DZA65_RS03280 0.43 -0.0 696,381 - DZA65_RS03280 0.43 +1.7 696,381 - DZA65_RS03280 0.43 -0.8 696,381 - DZA65_RS03280 0.43 -0.5 696,381 - DZA65_RS03280 0.43 -0.6 696,381 - DZA65_RS03280 0.43 +0.2 696,381 - DZA65_RS03280 0.43 +1.0 696,381 - DZA65_RS03280 0.43 +0.4 696,381 - DZA65_RS03280 0.43 -0.3 696,381 - DZA65_RS03280 0.43 -0.5 696,381 - DZA65_RS03280 0.43 +0.3 696,381 - DZA65_RS03280 0.43 -1.5 696,381 - DZA65_RS03280 0.43 +1.0 696,381 - DZA65_RS03280 0.43 -0.6 696,381 - DZA65_RS03280 0.43 -0.1 696,381 - DZA65_RS03280 0.43 -1.5 696,381 - DZA65_RS03280 0.43 -0.6 696,381 - DZA65_RS03280 0.43 +1.2 696,477 + DZA65_RS03280 0.53 +1.1 696,477 + DZA65_RS03280 0.53 +0.6 696,477 + DZA65_RS03280 0.53 +1.8 696,478 - DZA65_RS03280 0.54 -0.5 696,478 - DZA65_RS03280 0.54 +0.7 696,478 - DZA65_RS03280 0.54 -0.4 696,519 + DZA65_RS03280 0.58 -1.0 696,519 + DZA65_RS03280 0.58 +0.9 696,519 + DZA65_RS03280 0.58 +1.9 696,519 + DZA65_RS03280 0.58 -1.2 696,519 + DZA65_RS03280 0.58 +2.0 696,519 + DZA65_RS03280 0.58 +0.7 696,520 - DZA65_RS03280 0.58 +1.0 696,520 - +0.2 696,521 + DZA65_RS03280 0.58 -0.7 696,521 + DZA65_RS03280 0.58 -0.5 696,521 + DZA65_RS03280 0.58 +1.8 696,522 - DZA65_RS03280 0.59 +1.0 696,522 - DZA65_RS03280 0.59 -0.5 696,522 - DZA65_RS03280 0.59 +0.4 696,522 - DZA65_RS03280 0.59 -1.3 696,530 + DZA65_RS03280 0.59 -0.1 696,530 + DZA65_RS03280 0.59 -1.7 696,530 + DZA65_RS03280 0.59 -1.3 696,531 - DZA65_RS03280 0.60 -0.1 696,531 - DZA65_RS03280 0.60 -0.6 696,531 - DZA65_RS03280 0.60 +0.5 696,531 - DZA65_RS03280 0.60 -0.2 696,531 - DZA65_RS03280 0.60 -0.9 696,531 - DZA65_RS03280 0.60 -1.8 696,582 + DZA65_RS03280 0.65 -0.3 696,635 + DZA65_RS03280 0.71 +1.1 696,635 + DZA65_RS03280 0.71 -0.9 696,635 + DZA65_RS03280 0.71 -2.9 696,636 - DZA65_RS03280 0.72 +0.1 696,788 + DZA65_RS03280 0.89 -0.2 696,788 + DZA65_RS03280 0.89 +1.5 696,788 + DZA65_RS03280 0.89 -1.3 696,788 + DZA65_RS03280 0.89 -0.1 696,788 + DZA65_RS03280 0.89 -0.4 696,788 + DZA65_RS03280 0.89 -2.5 696,789 - DZA65_RS03280 0.89 -1.3 696,789 - DZA65_RS03280 0.89 +0.8 696,789 - DZA65_RS03280 0.89 -0.1 696,789 - DZA65_RS03280 0.89 +1.1 696,789 - DZA65_RS03280 0.89 +1.5 696,789 - DZA65_RS03280 0.89 +0.3 696,789 - DZA65_RS03280 0.89 -0.8 696,792 + -0.3 696,792 + DZA65_RS03280 0.89 -0.7 696,792 + DZA65_RS03280 0.89 +0.4 696,792 + DZA65_RS03280 0.89 +1.0 696,792 + DZA65_RS03280 0.89 +1.4 696,792 + DZA65_RS03280 0.89 -0.2 696,792 + DZA65_RS03280 0.89 -0.5 696,793 - DZA65_RS03280 0.89 +0.1 696,793 - DZA65_RS03280 0.89 -2.3 696,793 - DZA65_RS03280 0.89 -0.3 696,793 - DZA65_RS03280 0.89 -0.7 696,793 - DZA65_RS03280 0.89 -0.8 696,793 - DZA65_RS03280 0.89 +1.2 696,793 - DZA65_RS03280 0.89 -1.9 696,793 - DZA65_RS03280 0.89 +1.2 696,793 - DZA65_RS03280 0.89 -0.4 696,793 - DZA65_RS03280 0.89 +0.3 696,793 - DZA65_RS03280 0.89 +0.4 696,793 - DZA65_RS03280 0.89 +0.7 696,793 - DZA65_RS03280 0.89 +0.2 696,793 - DZA65_RS03280 0.89 +0.2 696,795 + DZA65_RS03280 0.90 +1.2 696,796 - DZA65_RS03280 0.90 +0.4 696,825 - +1.2 696,854 + -1.7 696,855 - +0.4 696,855 - +1.4 696,857 + -1.5 696,857 + -0.3 696,857 + -0.6 696,857 + -1.2 696,857 + -0.0 696,857 + -0.3 696,857 + +0.1 696,857 + -1.7 696,857 + -1.0 696,858 - -1.4 696,858 - +1.0 696,858 - +0.1 696,878 + +0.7 696,878 + +1.1 696,879 - +0.7 696,879 - -0.5
Or see this region's nucleotide sequence