Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01500 and DZA65_RS01505 are separated by 92 nucleotides DZA65_RS01505 and DZA65_RS01510 are separated by 24 nucleotides DZA65_RS01510 and DZA65_RS01515 are separated by 49 nucleotides DZA65_RS01515 and DZA65_RS01520 are separated by 15 nucleotides
DZA65_RS01500: DZA65_RS01500 - PTS IIA-like nitrogen regulatory protein PtsN, at 330,580 to 331,068
_RS01500
DZA65_RS01505: DZA65_RS01505 - ribosome hibernation promoting factor, at 331,161 to 331,448
_RS01505
DZA65_RS01510: DZA65_RS01510 - RNA polymerase factor sigma-54, at 331,473 to 332,906
_RS01510
DZA65_RS01515: DZA65_RS01515 - LPS export ABC transporter ATP-binding protein, at 332,956 to 333,681
_RS01515
DZA65_RS01520: DZA65_RS01520 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 333,697 to 334,275
_RS01520
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 330.482 kb on + strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.486 kb on + strand at 330.487 kb on - strand at 330.487 kb on - strand at 330.487 kb on - strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.702 kb on + strand, within DZA65_RS01500 at 330.702 kb on + strand, within DZA65_RS01500 at 330.702 kb on + strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.706 kb on + strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.717 kb on + strand, within DZA65_RS01500 at 330.717 kb on + strand, within DZA65_RS01500 at 330.718 kb on - strand, within DZA65_RS01500 at 330.831 kb on + strand, within DZA65_RS01500 at 330.832 kb on - strand, within DZA65_RS01500 at 330.832 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 331.011 kb on + strand, within DZA65_RS01500 at 331.017 kb on + strand, within DZA65_RS01500 at 331.017 kb on + strand, within DZA65_RS01500 at 331.018 kb on - strand, within DZA65_RS01500 at 331.018 kb on - strand, within DZA65_RS01500 at 331.042 kb on - strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.081 kb on + strand at 331.081 kb on + strand at 331.082 kb on - strand at 331.082 kb on - strand at 331.082 kb on - strand at 331.119 kb on + strand at 331.120 kb on - strand at 331.120 kb on - strand at 331.120 kb on - strand at 331.184 kb on + strand at 331.184 kb on + strand at 331.185 kb on - strand at 331.185 kb on - strand at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.241 kb on + strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.336 kb on + strand, within DZA65_RS01505 at 331.336 kb on + strand, within DZA65_RS01505 at 331.337 kb on - strand, within DZA65_RS01505 at 331.337 kb on - strand, within DZA65_RS01505 at 331.349 kb on + strand, within DZA65_RS01505 at 331.350 kb on - strand, within DZA65_RS01505 at 331.350 kb on - strand, within DZA65_RS01505 at 331.360 kb on + strand, within DZA65_RS01505 at 331.361 kb on - strand, within DZA65_RS01505 at 331.439 kb on + strand at 331.439 kb on + strand at 331.440 kb on - strand at 331.448 kb on + strand at 331.467 kb on + strand at 331.468 kb on - strand at 331.488 kb on - strand at 331.488 kb on - strand at 331.512 kb on + strand at 331.512 kb on + strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.706 kb on - strand, within DZA65_RS01510 at 331.706 kb on - strand, within DZA65_RS01510 at 331.706 kb on - strand, within DZA65_RS01510 at 331.722 kb on - strand, within DZA65_RS01510 at 331.733 kb on + strand, within DZA65_RS01510 at 331.814 kb on + strand, within DZA65_RS01510 at 331.815 kb on - strand, within DZA65_RS01510 at 331.815 kb on - strand, within DZA65_RS01510 at 332.000 kb on - strand, within DZA65_RS01510 at 332.070 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.096 kb on - strand, within DZA65_RS01510 at 332.169 kb on + strand, within DZA65_RS01510 at 332.169 kb on + strand, within DZA65_RS01510 at 332.170 kb on - strand, within DZA65_RS01510 at 332.170 kb on - strand, within DZA65_RS01510 at 332.170 kb on - strand at 332.283 kb on - strand, within DZA65_RS01510 at 332.283 kb on - strand, within DZA65_RS01510 at 332.440 kb on - strand, within DZA65_RS01510 at 332.540 kb on - strand, within DZA65_RS01510 at 332.572 kb on + strand, within DZA65_RS01510 at 332.573 kb on - strand, within DZA65_RS01510 at 332.675 kb on + strand, within DZA65_RS01510 at 332.850 kb on + strand at 332.865 kb on - strand at 332.907 kb on - strand at 332.916 kb on + strand at 332.916 kb on + strand at 332.917 kb on - strand at 332.917 kb on - strand at 332.942 kb on - strand at 332.942 kb on - strand at 332.942 kb on - strand at 332.942 kb on - strand at 332.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 330,482 + -1.5 330,483 - +1.2 330,483 - -1.1 330,483 - +1.0 330,483 - +1.3 330,486 + -2.1 330,487 - +0.9 330,487 - +1.5 330,487 - -0.5 330,539 + -1.1 330,539 + -0.1 330,539 + +0.4 330,539 + -1.4 330,540 - +0.0 330,540 - +1.8 330,540 - -0.0 330,540 - -1.1 330,540 - +0.1 330,540 - +0.0 330,540 - +0.1 330,702 + DZA65_RS01500 0.25 -0.1 330,702 + DZA65_RS01500 0.25 -0.6 330,702 + DZA65_RS01500 0.25 -1.1 330,703 - DZA65_RS01500 0.25 +0.4 330,703 - DZA65_RS01500 0.25 -1.5 330,703 - DZA65_RS01500 0.25 -0.4 330,703 - DZA65_RS01500 0.25 +0.9 330,706 + DZA65_RS01500 0.26 -0.5 330,707 - DZA65_RS01500 0.26 -0.7 330,707 - DZA65_RS01500 0.26 +0.3 330,707 - DZA65_RS01500 0.26 +1.3 330,707 - DZA65_RS01500 0.26 -0.1 330,707 - DZA65_RS01500 0.26 +0.5 330,707 - DZA65_RS01500 0.26 +1.9 330,707 - DZA65_RS01500 0.26 +0.1 330,717 + DZA65_RS01500 0.28 -1.0 330,717 + DZA65_RS01500 0.28 -0.3 330,718 - DZA65_RS01500 0.28 +1.9 330,831 + DZA65_RS01500 0.51 +0.4 330,832 - DZA65_RS01500 0.52 -0.5 330,832 - DZA65_RS01500 0.52 +2.3 330,895 - DZA65_RS01500 0.64 +0.3 330,895 - DZA65_RS01500 0.64 -0.6 330,895 - DZA65_RS01500 0.64 -1.0 331,011 + DZA65_RS01500 0.88 -1.1 331,017 + DZA65_RS01500 0.89 +1.2 331,017 + DZA65_RS01500 0.89 -0.6 331,018 - DZA65_RS01500 0.90 +0.4 331,018 - DZA65_RS01500 0.90 -0.4 331,042 - -0.3 331,071 + -0.4 331,071 + -0.7 331,071 + +0.1 331,071 + +0.5 331,071 + -0.1 331,071 + -2.1 331,071 + -0.4 331,072 - -0.4 331,072 - +0.3 331,072 - +1.5 331,072 - -1.4 331,072 - +0.4 331,072 - -3.1 331,072 - +0.4 331,072 - +1.4 331,072 - +0.0 331,072 - -0.3 331,072 - -0.6 331,072 - +0.1 331,072 - -1.1 331,072 - +0.6 331,072 - -0.1 331,081 + -0.5 331,081 + +0.6 331,082 - +0.1 331,082 - -0.4 331,082 - +0.9 331,119 + +0.5 331,120 - -1.5 331,120 - -0.1 331,120 - -1.0 331,184 + -1.0 331,184 + +0.9 331,185 - +0.3 331,185 - +0.2 331,237 + DZA65_RS01505 0.26 +0.4 331,237 + DZA65_RS01505 0.26 -1.7 331,237 + DZA65_RS01505 0.26 -0.7 331,237 + DZA65_RS01505 0.26 -1.5 331,237 + DZA65_RS01505 0.26 +1.2 331,238 - DZA65_RS01505 0.27 -1.5 331,238 - DZA65_RS01505 0.27 +0.3 331,238 - DZA65_RS01505 0.27 -0.1 331,238 - DZA65_RS01505 0.27 +0.9 331,238 - DZA65_RS01505 0.27 -0.2 331,238 - DZA65_RS01505 0.27 -0.2 331,241 + DZA65_RS01505 0.28 +0.9 331,242 - DZA65_RS01505 0.28 +0.0 331,242 - DZA65_RS01505 0.28 -0.5 331,242 - DZA65_RS01505 0.28 +1.1 331,336 + DZA65_RS01505 0.61 -0.1 331,336 + DZA65_RS01505 0.61 +0.4 331,337 - DZA65_RS01505 0.61 -1.5 331,337 - DZA65_RS01505 0.61 +0.9 331,349 + DZA65_RS01505 0.65 -0.6 331,350 - DZA65_RS01505 0.66 +0.9 331,350 - DZA65_RS01505 0.66 -0.1 331,360 + DZA65_RS01505 0.69 -1.7 331,361 - DZA65_RS01505 0.69 -0.1 331,439 + -1.1 331,439 + +0.3 331,440 - +0.6 331,448 + -0.6 331,467 + -0.7 331,468 - -0.5 331,488 - +0.6 331,488 - +2.3 331,512 + -1.0 331,512 + -0.4 331,513 - -0.1 331,513 - -1.1 331,513 - -0.4 331,513 - -0.7 331,706 - DZA65_RS01510 0.16 -2.0 331,706 - DZA65_RS01510 0.16 -1.0 331,706 - DZA65_RS01510 0.16 -1.3 331,722 - DZA65_RS01510 0.17 -1.5 331,733 + DZA65_RS01510 0.18 -1.1 331,814 + DZA65_RS01510 0.24 -1.2 331,815 - DZA65_RS01510 0.24 -0.5 331,815 - DZA65_RS01510 0.24 -1.5 332,000 - DZA65_RS01510 0.37 -1.2 332,070 - DZA65_RS01510 0.42 +0.8 332,096 - DZA65_RS01510 0.43 -1.3 332,096 - DZA65_RS01510 0.43 -0.9 332,096 - DZA65_RS01510 0.43 +0.0 332,096 - DZA65_RS01510 0.43 -0.8 332,169 + DZA65_RS01510 0.49 +0.8 332,169 + DZA65_RS01510 0.49 -0.5 332,170 - DZA65_RS01510 0.49 -2.0 332,170 - DZA65_RS01510 0.49 -2.0 332,170 - +1.6 332,283 - DZA65_RS01510 0.56 +1.3 332,283 - DZA65_RS01510 0.56 +0.3 332,440 - DZA65_RS01510 0.67 +0.0 332,540 - DZA65_RS01510 0.74 -3.0 332,572 + DZA65_RS01510 0.77 -0.9 332,573 - DZA65_RS01510 0.77 -0.7 332,675 + DZA65_RS01510 0.84 -0.7 332,850 + +0.2 332,865 - -0.5 332,907 - -0.2 332,916 + -1.3 332,916 + +0.0 332,917 - +0.6 332,917 - -0.7 332,942 - +1.3 332,942 - +0.5 332,942 - +2.8 332,942 - +0.6 332,955 - -2.2
Or see this region's nucleotide sequence