Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01255 and DZA65_RS01260 are separated by 15 nucleotides DZA65_RS01260 and DZA65_RS01265 are separated by 598 nucleotides
DZA65_RS01255: DZA65_RS01255 - phosphoribosylamine--glycine ligase, at 278,583 to 279,872
_RS01255
DZA65_RS01260: DZA65_RS01260 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 279,888 to 281,477
_RS01260
DZA65_RS01265: DZA65_RS01265 - 16S ribosomal RNA, at 282,076 to 283,623
_RS01265
Position (kb) 279
280
281
282 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 278.949 kb on + strand, within DZA65_RS01255 at 278.949 kb on + strand, within DZA65_RS01255 at 278.950 kb on - strand at 278.950 kb on - strand, within DZA65_RS01255 at 278.950 kb on - strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.175 kb on + strand, within DZA65_RS01255 at 279.176 kb on - strand, within DZA65_RS01255 at 279.176 kb on - strand, within DZA65_RS01255 at 279.324 kb on - strand, within DZA65_RS01255 at 279.440 kb on + strand, within DZA65_RS01255 at 279.471 kb on - strand, within DZA65_RS01255 at 279.471 kb on - strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.508 kb on + strand, within DZA65_RS01255 at 279.509 kb on - strand, within DZA65_RS01255 at 279.551 kb on + strand, within DZA65_RS01255 at 279.552 kb on - strand, within DZA65_RS01255 at 279.735 kb on + strand, within DZA65_RS01255 at 279.735 kb on + strand, within DZA65_RS01255 at 279.735 kb on + strand, within DZA65_RS01255 at 279.735 kb on + strand, within DZA65_RS01255 at 279.735 kb on + strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.736 kb on - strand, within DZA65_RS01255 at 279.787 kb on + strand at 279.787 kb on + strand at 279.788 kb on - strand at 279.788 kb on - strand at 279.851 kb on + strand at 279.852 kb on - strand at 279.858 kb on - strand at 279.866 kb on + strand at 279.866 kb on + strand at 279.866 kb on + strand at 279.866 kb on + strand at 279.867 kb on - strand at 279.867 kb on - strand at 279.878 kb on + strand at 279.878 kb on + strand at 279.878 kb on + strand at 279.879 kb on - strand at 279.890 kb on - strand at 279.890 kb on - strand at 279.914 kb on + strand at 280.025 kb on + strand at 280.123 kb on + strand, within DZA65_RS01260 at 280.177 kb on + strand, within DZA65_RS01260 at 280.177 kb on + strand, within DZA65_RS01260 at 280.178 kb on - strand, within DZA65_RS01260 at 280.197 kb on - strand, within DZA65_RS01260 at 280.392 kb on + strand, within DZA65_RS01260 at 280.393 kb on - strand, within DZA65_RS01260 at 280.567 kb on + strand, within DZA65_RS01260 at 280.567 kb on + strand, within DZA65_RS01260 at 280.568 kb on - strand, within DZA65_RS01260 at 280.568 kb on - strand, within DZA65_RS01260 at 280.693 kb on + strand, within DZA65_RS01260 at 280.693 kb on + strand, within DZA65_RS01260 at 280.694 kb on - strand, within DZA65_RS01260 at 280.694 kb on - strand, within DZA65_RS01260 at 280.694 kb on - strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.758 kb on + strand, within DZA65_RS01260 at 280.759 kb on - strand, within DZA65_RS01260 at 280.759 kb on - strand at 280.759 kb on - strand, within DZA65_RS01260 at 280.759 kb on - strand, within DZA65_RS01260 at 280.759 kb on - strand, within DZA65_RS01260 at 280.759 kb on - strand, within DZA65_RS01260 at 280.760 kb on + strand, within DZA65_RS01260 at 280.760 kb on + strand at 280.762 kb on + strand, within DZA65_RS01260 at 280.762 kb on + strand, within DZA65_RS01260 at 280.762 kb on + strand, within DZA65_RS01260 at 280.762 kb on + strand, within DZA65_RS01260 at 280.762 kb on + strand, within DZA65_RS01260 at 280.763 kb on - strand, within DZA65_RS01260 at 280.763 kb on - strand, within DZA65_RS01260 at 280.763 kb on - strand, within DZA65_RS01260 at 280.763 kb on - strand, within DZA65_RS01260 at 280.763 kb on - strand, within DZA65_RS01260 at 280.763 kb on - strand, within DZA65_RS01260 at 280.763 kb on - strand, within DZA65_RS01260 at 280.803 kb on - strand, within DZA65_RS01260 at 280.876 kb on + strand, within DZA65_RS01260 at 280.877 kb on - strand, within DZA65_RS01260 at 280.877 kb on - strand, within DZA65_RS01260 at 280.877 kb on - strand, within DZA65_RS01260 at 280.877 kb on - strand, within DZA65_RS01260 at 280.890 kb on - strand, within DZA65_RS01260 at 280.900 kb on + strand, within DZA65_RS01260 at 280.900 kb on + strand, within DZA65_RS01260 at 280.900 kb on + strand, within DZA65_RS01260 at 280.900 kb on + strand, within DZA65_RS01260 at 280.900 kb on + strand, within DZA65_RS01260 at 280.901 kb on - strand, within DZA65_RS01260 at 280.901 kb on - strand, within DZA65_RS01260 at 280.972 kb on + strand, within DZA65_RS01260 at 280.972 kb on + strand, within DZA65_RS01260 at 281.020 kb on + strand, within DZA65_RS01260 at 281.021 kb on - strand, within DZA65_RS01260 at 281.033 kb on + strand, within DZA65_RS01260 at 281.034 kb on - strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.037 kb on + strand, within DZA65_RS01260 at 281.038 kb on - strand, within DZA65_RS01260 at 281.038 kb on - strand, within DZA65_RS01260 at 281.038 kb on - strand, within DZA65_RS01260 at 281.063 kb on + strand, within DZA65_RS01260 at 281.063 kb on + strand, within DZA65_RS01260 at 281.081 kb on + strand, within DZA65_RS01260 at 281.081 kb on + strand, within DZA65_RS01260 at 281.082 kb on - strand, within DZA65_RS01260 at 281.138 kb on + strand, within DZA65_RS01260 at 281.162 kb on - strand, within DZA65_RS01260 at 281.168 kb on + strand, within DZA65_RS01260 at 281.196 kb on - strand, within DZA65_RS01260 at 281.308 kb on + strand, within DZA65_RS01260 at 281.436 kb on + strand at 281.436 kb on + strand at 281.437 kb on - strand at 281.437 kb on - strand at 281.459 kb on + strand at 281.498 kb on + strand at 281.498 kb on + strand at 281.498 kb on + strand at 281.499 kb on - strand at 281.499 kb on - strand at 281.499 kb on - strand at 281.499 kb on - strand at 281.499 kb on - strand at 281.499 kb on - strand at 281.506 kb on + strand at 281.506 kb on + strand at 281.506 kb on + strand at 281.506 kb on + strand at 281.507 kb on - strand at 281.507 kb on - strand at 281.507 kb on - strand at 281.507 kb on - strand at 281.511 kb on + strand at 281.512 kb on - strand at 281.521 kb on + strand at 281.529 kb on + strand at 281.529 kb on + strand at 281.529 kb on + strand at 281.529 kb on + strand at 281.543 kb on + strand at 281.544 kb on - strand at 281.579 kb on + strand at 281.580 kb on - strand at 281.595 kb on - strand at 281.694 kb on - strand at 281.698 kb on + strand at 281.699 kb on - strand at 281.699 kb on - strand at 281.699 kb on - strand at 281.700 kb on + strand at 281.701 kb on - strand at 281.701 kb on - strand at 281.741 kb on + strand at 281.780 kb on - strand at 281.780 kb on - strand at 281.780 kb on - strand at 281.782 kb on - strand at 281.782 kb on - strand at 281.782 kb on - strand at 281.782 kb on - strand at 281.877 kb on - strand at 281.877 kb on - strand at 281.877 kb on - strand at 281.877 kb on - strand at 281.877 kb on - strand at 281.877 kb on - strand at 282.327 kb on + strand, within DZA65_RS01265
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 278,949 + DZA65_RS01255 0.28 -1.4 278,949 + DZA65_RS01255 0.28 -1.2 278,950 - -1.5 278,950 - DZA65_RS01255 0.28 -0.6 278,950 - DZA65_RS01255 0.28 -1.5 279,076 + DZA65_RS01255 0.38 -2.9 279,076 + DZA65_RS01255 0.38 -0.5 279,076 + DZA65_RS01255 0.38 -0.2 279,076 + DZA65_RS01255 0.38 -1.1 279,076 + DZA65_RS01255 0.38 -1.3 279,076 + DZA65_RS01255 0.38 -3.0 279,077 - DZA65_RS01255 0.38 -0.9 279,077 - DZA65_RS01255 0.38 -2.1 279,077 - DZA65_RS01255 0.38 -0.1 279,119 + DZA65_RS01255 0.42 +0.0 279,119 + DZA65_RS01255 0.42 -0.7 279,119 + DZA65_RS01255 0.42 +1.3 279,119 + DZA65_RS01255 0.42 -2.3 279,119 + DZA65_RS01255 0.42 -1.5 279,120 - DZA65_RS01255 0.42 -1.5 279,120 - DZA65_RS01255 0.42 -0.9 279,120 - DZA65_RS01255 0.42 -0.1 279,120 - DZA65_RS01255 0.42 -1.5 279,120 - DZA65_RS01255 0.42 +1.9 279,120 - DZA65_RS01255 0.42 -2.0 279,120 - DZA65_RS01255 0.42 -2.5 279,120 - DZA65_RS01255 0.42 -1.5 279,120 - DZA65_RS01255 0.42 -1.8 279,175 + DZA65_RS01255 0.46 -2.4 279,176 - DZA65_RS01255 0.46 -0.7 279,176 - DZA65_RS01255 0.46 -1.1 279,324 - DZA65_RS01255 0.57 -2.1 279,440 + DZA65_RS01255 0.66 -3.0 279,471 - DZA65_RS01255 0.69 -0.7 279,471 - DZA65_RS01255 0.69 -0.8 279,472 + DZA65_RS01255 0.69 -2.7 279,472 + DZA65_RS01255 0.69 -1.6 279,472 + DZA65_RS01255 0.69 -1.6 279,472 + DZA65_RS01255 0.69 -0.9 279,472 + -0.1 279,472 + DZA65_RS01255 0.69 -1.3 279,472 + DZA65_RS01255 0.69 -0.7 279,472 + DZA65_RS01255 0.69 +0.9 279,473 - DZA65_RS01255 0.69 -2.0 279,473 - DZA65_RS01255 0.69 -2.3 279,473 - DZA65_RS01255 0.69 -3.2 279,473 - DZA65_RS01255 0.69 -1.1 279,473 - DZA65_RS01255 0.69 -2.1 279,508 + DZA65_RS01255 0.72 -1.5 279,509 - DZA65_RS01255 0.72 -1.5 279,551 + DZA65_RS01255 0.75 -3.0 279,552 - DZA65_RS01255 0.75 -1.5 279,735 + DZA65_RS01255 0.89 -2.5 279,735 + DZA65_RS01255 0.89 -0.7 279,735 + DZA65_RS01255 0.89 -0.1 279,735 + DZA65_RS01255 0.89 -0.9 279,735 + DZA65_RS01255 0.89 -0.7 279,736 - DZA65_RS01255 0.89 -2.1 279,736 - DZA65_RS01255 0.89 +0.1 279,736 - DZA65_RS01255 0.89 -1.9 279,736 - DZA65_RS01255 0.89 -0.7 279,736 - DZA65_RS01255 0.89 +0.3 279,736 - DZA65_RS01255 0.89 -2.3 279,736 - DZA65_RS01255 0.89 -0.4 279,736 - DZA65_RS01255 0.89 -0.9 279,787 + -1.7 279,787 + -0.1 279,788 - -2.9 279,788 - -3.0 279,851 + +0.7 279,852 - -2.2 279,858 - -2.2 279,866 + -2.2 279,866 + +1.3 279,866 + -1.3 279,866 + -1.7 279,867 - -1.6 279,867 - -0.7 279,878 + -0.9 279,878 + -0.9 279,878 + +0.4 279,879 - -0.8 279,890 - +1.2 279,890 - +0.5 279,914 + -1.5 280,025 + -0.7 280,123 + DZA65_RS01260 0.15 -3.0 280,177 + DZA65_RS01260 0.18 -0.1 280,177 + DZA65_RS01260 0.18 -0.5 280,178 - DZA65_RS01260 0.18 -0.5 280,197 - DZA65_RS01260 0.19 +0.9 280,392 + DZA65_RS01260 0.32 -2.4 280,393 - DZA65_RS01260 0.32 -1.7 280,567 + DZA65_RS01260 0.43 -2.2 280,567 + DZA65_RS01260 0.43 -1.6 280,568 - DZA65_RS01260 0.43 -1.5 280,568 - DZA65_RS01260 0.43 +2.5 280,693 + DZA65_RS01260 0.51 -1.1 280,693 + DZA65_RS01260 0.51 -1.9 280,694 - DZA65_RS01260 0.51 -1.9 280,694 - DZA65_RS01260 0.51 -2.6 280,694 - DZA65_RS01260 0.51 -3.2 280,758 + DZA65_RS01260 0.55 -0.7 280,758 + DZA65_RS01260 0.55 -2.1 280,758 + DZA65_RS01260 0.55 -1.7 280,758 + DZA65_RS01260 0.55 +0.3 280,758 + DZA65_RS01260 0.55 -2.0 280,758 + DZA65_RS01260 0.55 -2.7 280,758 + DZA65_RS01260 0.55 -2.8 280,758 + DZA65_RS01260 0.55 -2.6 280,759 - DZA65_RS01260 0.55 -1.7 280,759 - -1.1 280,759 - DZA65_RS01260 0.55 -2.1 280,759 - DZA65_RS01260 0.55 -1.2 280,759 - DZA65_RS01260 0.55 -3.1 280,759 - DZA65_RS01260 0.55 -1.9 280,760 + DZA65_RS01260 0.55 -3.8 280,760 + +0.9 280,762 + DZA65_RS01260 0.55 -3.7 280,762 + DZA65_RS01260 0.55 -2.0 280,762 + DZA65_RS01260 0.55 +0.5 280,762 + DZA65_RS01260 0.55 -1.2 280,762 + DZA65_RS01260 0.55 -2.0 280,763 - DZA65_RS01260 0.55 -2.7 280,763 - DZA65_RS01260 0.55 -0.1 280,763 - DZA65_RS01260 0.55 -2.8 280,763 - DZA65_RS01260 0.55 -3.3 280,763 - DZA65_RS01260 0.55 -1.4 280,763 - DZA65_RS01260 0.55 -1.7 280,763 - DZA65_RS01260 0.55 -0.0 280,803 - DZA65_RS01260 0.58 -1.8 280,876 + DZA65_RS01260 0.62 -3.0 280,877 - DZA65_RS01260 0.62 -2.1 280,877 - DZA65_RS01260 0.62 -0.6 280,877 - DZA65_RS01260 0.62 -0.5 280,877 - DZA65_RS01260 0.62 -2.4 280,890 - DZA65_RS01260 0.63 -0.1 280,900 + DZA65_RS01260 0.64 -2.9 280,900 + DZA65_RS01260 0.64 -1.8 280,900 + DZA65_RS01260 0.64 -1.8 280,900 + DZA65_RS01260 0.64 -0.1 280,900 + DZA65_RS01260 0.64 -1.7 280,901 - DZA65_RS01260 0.64 -3.3 280,901 - DZA65_RS01260 0.64 -2.3 280,972 + DZA65_RS01260 0.68 -1.1 280,972 + DZA65_RS01260 0.68 -1.4 281,020 + DZA65_RS01260 0.71 -1.9 281,021 - DZA65_RS01260 0.71 -0.5 281,033 + DZA65_RS01260 0.72 -1.3 281,034 - DZA65_RS01260 0.72 -1.3 281,037 + DZA65_RS01260 0.72 -0.1 281,037 + DZA65_RS01260 0.72 -1.9 281,037 + DZA65_RS01260 0.72 -0.7 281,037 + DZA65_RS01260 0.72 -0.1 281,037 + DZA65_RS01260 0.72 -2.0 281,037 + DZA65_RS01260 0.72 -0.4 281,037 + DZA65_RS01260 0.72 -2.4 281,037 + DZA65_RS01260 0.72 -3.1 281,037 + DZA65_RS01260 0.72 -1.1 281,037 + DZA65_RS01260 0.72 -2.0 281,038 - DZA65_RS01260 0.72 -1.5 281,038 - DZA65_RS01260 0.72 -2.1 281,038 - DZA65_RS01260 0.72 -1.7 281,063 + DZA65_RS01260 0.74 -2.3 281,063 + DZA65_RS01260 0.74 -2.1 281,081 + DZA65_RS01260 0.75 -1.1 281,081 + DZA65_RS01260 0.75 -0.1 281,082 - DZA65_RS01260 0.75 -2.4 281,138 + DZA65_RS01260 0.79 -3.1 281,162 - DZA65_RS01260 0.80 +0.5 281,168 + DZA65_RS01260 0.81 -3.5 281,196 - DZA65_RS01260 0.82 -2.5 281,308 + DZA65_RS01260 0.89 -2.5 281,436 + +0.4 281,436 + -2.5 281,437 - -2.2 281,437 - -0.9 281,459 + +0.3 281,498 + -1.1 281,498 + -2.2 281,498 + -0.5 281,499 - -0.5 281,499 - -0.5 281,499 - -0.3 281,499 - +1.0 281,499 - -2.6 281,499 - -0.5 281,506 + -2.2 281,506 + -0.9 281,506 + -1.9 281,506 + -0.9 281,507 - -4.3 281,507 - +0.3 281,507 - -1.2 281,507 - +0.9 281,511 + +0.5 281,512 - +1.1 281,521 + -2.1 281,529 + +1.0 281,529 + +0.6 281,529 + -1.8 281,529 + -1.9 281,543 + +0.5 281,544 - -0.4 281,579 + -2.8 281,580 - +0.7 281,595 - +1.1 281,694 - +0.0 281,698 + -0.2 281,699 - -2.6 281,699 - -1.1 281,699 - -1.7 281,700 + -0.2 281,701 - -0.8 281,701 - +2.0 281,741 + -0.9 281,780 - -1.7 281,780 - +1.7 281,780 - +0.3 281,782 - +0.3 281,782 - -0.6 281,782 - -1.1 281,782 - -0.2 281,877 - -0.4 281,877 - -0.7 281,877 - -1.1 281,877 - +0.6 281,877 - +0.2 281,877 - -0.3 282,327 + DZA65_RS01265 0.16 -0.5
Or see this region's nucleotide sequence