Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00850 and DZA65_RS00855 are separated by 118 nucleotides DZA65_RS00855 and DZA65_RS00860 are separated by 362 nucleotides
DZA65_RS00850: DZA65_RS00850 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 189,802 to 190,821
_RS00850
DZA65_RS00855: DZA65_RS00855 - serine O-acetyltransferase, at 190,940 to 191,761
_RS00855
DZA65_RS00860: DZA65_RS00860 - phospholipid:lipid A palmitoyltransferase, at 192,124 to 192,726
_RS00860
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 190.830 kb on + strand at 190.830 kb on + strand at 190.833 kb on + strand at 190.834 kb on - strand at 190.834 kb on - strand at 190.868 kb on + strand at 190.868 kb on + strand at 190.868 kb on + strand at 190.868 kb on + strand at 190.868 kb on + strand at 190.868 kb on + strand at 190.868 kb on + strand at 190.868 kb on + strand at 190.869 kb on - strand at 190.876 kb on + strand at 190.876 kb on + strand at 190.891 kb on + strand at 191.690 kb on - strand at 191.714 kb on + strand at 191.715 kb on - strand at 191.715 kb on - strand at 191.762 kb on + strand at 191.762 kb on + strand at 191.762 kb on + strand at 191.762 kb on + strand at 191.762 kb on + strand at 191.763 kb on - strand at 191.763 kb on - strand at 191.763 kb on - strand at 191.763 kb on - strand at 191.763 kb on - strand at 191.763 kb on - strand at 191.876 kb on + strand at 191.876 kb on + strand at 191.877 kb on - strand at 191.925 kb on + strand at 191.925 kb on + strand at 191.925 kb on + strand at 191.925 kb on + strand at 191.925 kb on + strand at 191.925 kb on + strand at 191.926 kb on - strand at 191.926 kb on - strand at 191.926 kb on - strand at 191.926 kb on - strand at 191.929 kb on + strand at 191.929 kb on + strand at 191.929 kb on + strand at 191.929 kb on + strand at 191.929 kb on + strand at 191.930 kb on - strand at 191.930 kb on - strand at 191.930 kb on - strand at 191.930 kb on - strand at 191.930 kb on - strand at 191.930 kb on - strand at 191.932 kb on + strand at 191.932 kb on + strand at 191.932 kb on + strand at 191.933 kb on - strand at 191.933 kb on - strand at 191.936 kb on + strand at 191.936 kb on + strand at 191.937 kb on - strand at 191.937 kb on - strand at 191.937 kb on - strand at 191.937 kb on - strand at 191.954 kb on + strand at 191.971 kb on - strand at 191.971 kb on - strand at 191.971 kb on - strand at 191.971 kb on - strand at 191.981 kb on + strand at 191.987 kb on + strand at 191.987 kb on + strand at 191.987 kb on + strand at 191.987 kb on + strand at 191.988 kb on - strand at 191.991 kb on + strand at 191.991 kb on + strand at 191.991 kb on + strand at 191.992 kb on - strand at 191.992 kb on - strand at 191.992 kb on - strand at 191.992 kb on - strand at 191.992 kb on - strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.011 kb on + strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.012 kb on - strand at 192.013 kb on + strand at 192.013 kb on + strand at 192.014 kb on - strand at 192.014 kb on - strand at 192.051 kb on - strand at 192.105 kb on + strand at 192.106 kb on - strand at 192.113 kb on + strand at 192.113 kb on + strand at 192.113 kb on + strand at 192.114 kb on - strand at 192.114 kb on - strand at 192.114 kb on - strand at 192.123 kb on + strand at 192.124 kb on - strand at 192.131 kb on + strand at 192.131 kb on + strand at 192.176 kb on + strand at 192.176 kb on + strand at 192.176 kb on + strand at 192.176 kb on + strand at 192.176 kb on + strand at 192.176 kb on + strand at 192.177 kb on - strand at 192.177 kb on - strand at 192.177 kb on - strand at 192.177 kb on - strand at 192.177 kb on - strand at 192.177 kb on - strand at 192.181 kb on - strand at 192.214 kb on - strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.316 kb on + strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.317 kb on - strand, within DZA65_RS00860 at 192.340 kb on - strand, within DZA65_RS00860 at 192.352 kb on + strand, within DZA65_RS00860 at 192.352 kb on + strand, within DZA65_RS00860 at 192.353 kb on - strand, within DZA65_RS00860 at 192.353 kb on - strand, within DZA65_RS00860 at 192.376 kb on + strand, within DZA65_RS00860 at 192.376 kb on + strand, within DZA65_RS00860 at 192.376 kb on + strand, within DZA65_RS00860 at 192.376 kb on + strand, within DZA65_RS00860 at 192.377 kb on - strand, within DZA65_RS00860 at 192.377 kb on - strand, within DZA65_RS00860 at 192.449 kb on - strand, within DZA65_RS00860 at 192.449 kb on - strand, within DZA65_RS00860 at 192.506 kb on - strand, within DZA65_RS00860 at 192.506 kb on - strand, within DZA65_RS00860 at 192.595 kb on + strand, within DZA65_RS00860 at 192.595 kb on + strand, within DZA65_RS00860 at 192.595 kb on + strand, within DZA65_RS00860 at 192.595 kb on + strand, within DZA65_RS00860 at 192.595 kb on + strand, within DZA65_RS00860 at 192.595 kb on + strand, within DZA65_RS00860 at 192.596 kb on - strand, within DZA65_RS00860 at 192.596 kb on - strand, within DZA65_RS00860 at 192.596 kb on - strand, within DZA65_RS00860 at 192.596 kb on - strand, within DZA65_RS00860 at 192.638 kb on - strand, within DZA65_RS00860 at 192.638 kb on - strand, within DZA65_RS00860 at 192.638 kb on - strand, within DZA65_RS00860 at 192.638 kb on - strand, within DZA65_RS00860 at 192.638 kb on - strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.664 kb on + strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.665 kb on - strand, within DZA65_RS00860 at 192.679 kb on + strand at 192.679 kb on + strand at 192.679 kb on + strand at 192.679 kb on + strand at 192.679 kb on + strand at 192.679 kb on + strand at 192.679 kb on + strand at 192.679 kb on + strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.680 kb on - strand at 192.681 kb on + strand at 192.681 kb on + strand at 192.682 kb on - strand at 192.682 kb on - strand at 192.682 kb on - strand at 192.682 kb on - strand at 192.682 kb on - strand at 192.682 kb on - strand at 192.684 kb on + strand at 192.684 kb on + strand at 192.684 kb on + strand at 192.685 kb on - strand at 192.685 kb on - strand at 192.685 kb on - strand at 192.685 kb on - strand at 192.685 kb on - strand at 192.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 190,830 + -0.4 190,830 + -1.7 190,833 + +1.6 190,834 - +0.9 190,834 - -0.4 190,868 + +0.9 190,868 + -0.1 190,868 + +1.3 190,868 + +0.0 190,868 + +0.4 190,868 + +0.0 190,868 + +1.9 190,868 + -1.4 190,869 - +1.6 190,876 + +0.0 190,876 + -2.1 190,891 + +2.5 191,690 - -2.0 191,714 + +1.5 191,715 - +0.0 191,715 - -2.2 191,762 + -0.1 191,762 + +0.1 191,762 + -0.0 191,762 + +0.1 191,762 + -0.1 191,763 - -1.0 191,763 - +1.9 191,763 - +0.2 191,763 - +0.9 191,763 - +0.9 191,763 - -0.0 191,876 + +0.4 191,876 + -2.1 191,877 - +1.5 191,925 + +1.4 191,925 + -1.1 191,925 + -0.1 191,925 + -0.1 191,925 + +0.0 191,925 + +0.1 191,926 - +0.1 191,926 - -1.4 191,926 - -1.1 191,926 - -0.1 191,929 + +1.0 191,929 + +0.5 191,929 + -2.1 191,929 + -0.2 191,929 + -2.2 191,930 - -0.7 191,930 - -0.7 191,930 - -0.1 191,930 - -3.1 191,930 - +1.2 191,930 - +0.5 191,932 + +0.1 191,932 + -1.2 191,932 + -0.3 191,933 - +0.9 191,933 - -1.1 191,936 + +1.1 191,936 + -1.1 191,937 - +0.0 191,937 - +0.7 191,937 - +0.4 191,937 - +0.3 191,954 + +1.0 191,971 - -0.7 191,971 - -0.3 191,971 - +0.9 191,971 - -1.1 191,981 + -0.5 191,987 + -0.7 191,987 + +0.1 191,987 + -0.4 191,987 + +0.4 191,988 - -0.4 191,991 + +0.3 191,991 + -0.1 191,991 + +0.1 191,992 - +0.0 191,992 - -1.0 191,992 - -0.4 191,992 - -0.7 191,992 - +1.5 192,011 + -1.4 192,011 + -0.3 192,011 + -0.0 192,011 + -0.6 192,011 + -0.3 192,011 + +1.1 192,011 + -1.7 192,011 + -1.7 192,011 + -0.7 192,012 - -0.4 192,012 - -0.1 192,012 - +0.0 192,012 - -1.1 192,012 - -1.3 192,012 - +1.9 192,012 - +3.2 192,012 - -0.9 192,012 - +1.4 192,012 - -0.4 192,012 - -0.1 192,012 - -1.0 192,012 - +0.6 192,012 - +0.7 192,012 - +0.9 192,012 - -0.4 192,012 - -2.6 192,012 - -0.3 192,012 - -0.6 192,012 - -0.7 192,013 + +0.2 192,013 + +0.9 192,014 - +0.2 192,014 - +1.2 192,051 - +0.2 192,105 + -0.7 192,106 - -0.4 192,113 + -2.6 192,113 + +1.3 192,113 + -0.1 192,114 - -0.3 192,114 - -0.4 192,114 - -0.6 192,123 + +0.1 192,124 - -1.1 192,131 + -1.0 192,131 + +0.5 192,176 + -1.2 192,176 + +0.9 192,176 + -1.1 192,176 + +1.1 192,176 + -0.6 192,176 + +0.9 192,177 - -0.7 192,177 - +0.7 192,177 - +1.7 192,177 - +0.4 192,177 - +0.2 192,177 - +0.6 192,181 - -1.2 192,214 - DZA65_RS00860 0.15 +1.3 192,316 + DZA65_RS00860 0.32 +0.9 192,316 + DZA65_RS00860 0.32 +2.9 192,316 + DZA65_RS00860 0.32 -0.1 192,316 + DZA65_RS00860 0.32 -2.1 192,316 + DZA65_RS00860 0.32 +2.2 192,316 + DZA65_RS00860 0.32 +1.1 192,316 + DZA65_RS00860 0.32 +0.5 192,316 + DZA65_RS00860 0.32 -0.3 192,316 + DZA65_RS00860 0.32 +2.1 192,316 + DZA65_RS00860 0.32 +0.4 192,316 + DZA65_RS00860 0.32 -1.1 192,316 + DZA65_RS00860 0.32 +0.6 192,316 + DZA65_RS00860 0.32 -0.2 192,316 + DZA65_RS00860 0.32 -0.9 192,316 + DZA65_RS00860 0.32 -0.8 192,316 + DZA65_RS00860 0.32 -0.7 192,316 + DZA65_RS00860 0.32 -1.2 192,316 + DZA65_RS00860 0.32 +0.2 192,316 + DZA65_RS00860 0.32 -0.7 192,316 + DZA65_RS00860 0.32 -1.6 192,317 - DZA65_RS00860 0.32 -1.1 192,317 - DZA65_RS00860 0.32 +0.0 192,317 - -0.1 192,317 - DZA65_RS00860 0.32 -0.1 192,317 - DZA65_RS00860 0.32 +0.3 192,317 - DZA65_RS00860 0.32 -1.1 192,317 - DZA65_RS00860 0.32 +0.1 192,317 - DZA65_RS00860 0.32 +1.1 192,317 - DZA65_RS00860 0.32 +0.3 192,317 - DZA65_RS00860 0.32 -0.2 192,317 - DZA65_RS00860 0.32 -0.9 192,317 - DZA65_RS00860 0.32 -0.1 192,317 - DZA65_RS00860 0.32 +0.9 192,317 - DZA65_RS00860 0.32 +0.5 192,340 - DZA65_RS00860 0.36 -1.0 192,352 + DZA65_RS00860 0.38 -0.0 192,352 + DZA65_RS00860 0.38 +1.4 192,353 - DZA65_RS00860 0.38 +0.5 192,353 - DZA65_RS00860 0.38 +0.2 192,376 + DZA65_RS00860 0.42 -0.3 192,376 + DZA65_RS00860 0.42 -0.4 192,376 + DZA65_RS00860 0.42 +0.6 192,376 + DZA65_RS00860 0.42 -0.5 192,377 - DZA65_RS00860 0.42 +0.7 192,377 - DZA65_RS00860 0.42 -0.3 192,449 - DZA65_RS00860 0.54 +0.1 192,449 - DZA65_RS00860 0.54 +0.6 192,506 - DZA65_RS00860 0.63 +0.5 192,506 - DZA65_RS00860 0.63 +0.1 192,595 + DZA65_RS00860 0.78 +2.0 192,595 + DZA65_RS00860 0.78 -1.4 192,595 + DZA65_RS00860 0.78 -1.0 192,595 + DZA65_RS00860 0.78 -0.4 192,595 + DZA65_RS00860 0.78 -1.0 192,595 + DZA65_RS00860 0.78 -1.4 192,596 - DZA65_RS00860 0.78 +0.1 192,596 - DZA65_RS00860 0.78 -0.8 192,596 - DZA65_RS00860 0.78 -0.8 192,596 - DZA65_RS00860 0.78 -0.4 192,638 - DZA65_RS00860 0.85 +0.9 192,638 - DZA65_RS00860 0.85 +0.2 192,638 - DZA65_RS00860 0.85 -0.4 192,638 - DZA65_RS00860 0.85 +0.7 192,638 - DZA65_RS00860 0.85 -0.1 192,664 + DZA65_RS00860 0.90 +0.5 192,664 + DZA65_RS00860 0.90 +0.3 192,664 + DZA65_RS00860 0.90 +1.6 192,664 + DZA65_RS00860 0.90 -1.6 192,664 + DZA65_RS00860 0.90 -0.2 192,664 + DZA65_RS00860 0.90 -1.0 192,664 + DZA65_RS00860 0.90 -0.7 192,664 + DZA65_RS00860 0.90 +0.6 192,665 - DZA65_RS00860 0.90 +0.9 192,665 - DZA65_RS00860 0.90 -0.1 192,665 - DZA65_RS00860 0.90 +0.3 192,665 - DZA65_RS00860 0.90 -1.4 192,665 - DZA65_RS00860 0.90 +0.1 192,665 - DZA65_RS00860 0.90 +1.0 192,665 - DZA65_RS00860 0.90 +0.6 192,665 - DZA65_RS00860 0.90 -1.7 192,665 - -0.1 192,665 - DZA65_RS00860 0.90 -0.2 192,665 - DZA65_RS00860 0.90 +1.0 192,665 - DZA65_RS00860 0.90 +1.2 192,665 - DZA65_RS00860 0.90 -1.4 192,665 - DZA65_RS00860 0.90 -1.1 192,665 - DZA65_RS00860 0.90 +0.7 192,665 - DZA65_RS00860 0.90 -1.7 192,665 - DZA65_RS00860 0.90 +0.3 192,679 + +0.5 192,679 + +0.7 192,679 + -0.0 192,679 + -1.4 192,679 + +0.8 192,679 + -0.7 192,679 + +0.1 192,679 + +0.9 192,680 - +0.9 192,680 - -1.0 192,680 - +0.3 192,680 - -0.2 192,680 - +0.9 192,680 - +1.1 192,680 - +0.5 192,680 - -0.1 192,680 - -2.6 192,680 - +0.6 192,680 - +0.2 192,680 - -0.3 192,680 - -1.9 192,680 - -2.0 192,681 + +2.4 192,681 + -0.7 192,682 - -2.1 192,682 - +0.1 192,682 - -0.4 192,682 - -1.9 192,682 - -1.1 192,682 - -0.1 192,684 + -0.7 192,684 + -0.1 192,684 + -0.7 192,685 - -0.4 192,685 - +2.2 192,685 - +0.7 192,685 - -0.4 192,685 - -1.3 192,758 - +0.5
Or see this region's nucleotide sequence