Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00675 and DZA65_RS00680 are separated by 27 nucleotides DZA65_RS00680 and DZA65_RS00685 are separated by 32 nucleotides DZA65_RS00685 and DZA65_RS00690 are separated by 11 nucleotides DZA65_RS00690 and DZA65_RS00695 are separated by 8 nucleotides
DZA65_RS00675: DZA65_RS00675 - isoaspartyl peptidase/L-asparaginase, at 156,164 to 157,132
_RS00675
DZA65_RS00680: DZA65_RS00680 - M55 family metallopeptidase, at 157,160 to 157,981
_RS00680
DZA65_RS00685: DZA65_RS00685 - P1 family peptidase, at 158,014 to 159,069
_RS00685
DZA65_RS00690: DZA65_RS00690 - ABC transporter permease subunit, at 159,081 to 159,980
_RS00690
DZA65_RS00695: DZA65_RS00695 - ABC transporter permease subunit, at 159,989 to 160,909
_RS00695
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.120 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.146 kb on - strand at 157.162 kb on - strand at 157.162 kb on - strand at 157.162 kb on - strand at 157.209 kb on - strand at 157.327 kb on - strand at 157.357 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.567 kb on - strand, within DZA65_RS00680 at 157.571 kb on - strand, within DZA65_RS00680 at 157.571 kb on - strand, within DZA65_RS00680 at 157.611 kb on + strand, within DZA65_RS00680 at 157.611 kb on + strand, within DZA65_RS00680 at 157.772 kb on - strand at 157.892 kb on + strand at 157.899 kb on + strand at 157.900 kb on - strand at 157.900 kb on - strand at 157.970 kb on - strand at 157.970 kb on - strand at 157.973 kb on + strand at 157.974 kb on - strand at 157.974 kb on - strand at 157.974 kb on - strand at 158.326 kb on - strand, within DZA65_RS00685 at 158.626 kb on - strand, within DZA65_RS00685 at 158.632 kb on - strand, within DZA65_RS00685 at 158.731 kb on - strand, within DZA65_RS00685 at 158.803 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.957 kb on - strand, within DZA65_RS00685 at 159.059 kb on + strand at 159.060 kb on - strand at 159.082 kb on + strand at 159.082 kb on + strand at 159.083 kb on - strand at 159.083 kb on - strand at 159.158 kb on + strand at 159.227 kb on + strand, within DZA65_RS00690 at 159.227 kb on + strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.357 kb on - strand, within DZA65_RS00690 at 159.412 kb on + strand, within DZA65_RS00690 at 159.413 kb on - strand, within DZA65_RS00690 at 159.501 kb on - strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.610 kb on + strand, within DZA65_RS00690 at 159.610 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.614 kb on - strand, within DZA65_RS00690 at 159.614 kb on - strand, within DZA65_RS00690 at 159.650 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.700 kb on + strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.890 kb on + strand, within DZA65_RS00690 at 159.990 kb on + strand at 159.995 kb on + strand at 159.995 kb on + strand at 159.995 kb on + strand at 159.996 kb on - strand at 159.996 kb on - strand at 160.023 kb on + strand at 160.023 kb on + strand at 160.024 kb on - strand at 160.024 kb on - strand at 160.024 kb on - strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 157,120 + -0.7 157,145 + +2.1 157,145 + +2.1 157,145 + -0.3 157,145 + +0.6 157,146 - -1.1 157,162 - +0.8 157,162 - -2.0 157,162 - -0.5 157,209 - -1.1 157,327 - -2.1 157,357 + DZA65_RS00680 0.24 -0.7 157,467 + DZA65_RS00680 0.37 -1.0 157,467 + DZA65_RS00680 0.37 +0.3 157,467 + DZA65_RS00680 0.37 -1.9 157,467 + DZA65_RS00680 0.37 -0.2 157,468 - DZA65_RS00680 0.37 -0.1 157,468 - DZA65_RS00680 0.37 -0.8 157,468 - DZA65_RS00680 0.37 +0.6 157,468 - DZA65_RS00680 0.37 -1.0 157,468 - DZA65_RS00680 0.37 -0.5 157,567 - DZA65_RS00680 0.50 -0.2 157,571 - DZA65_RS00680 0.50 -0.1 157,571 - DZA65_RS00680 0.50 +1.3 157,611 + DZA65_RS00680 0.55 +0.1 157,611 + DZA65_RS00680 0.55 +1.5 157,772 - +0.9 157,892 + -1.1 157,899 + +0.7 157,900 - +1.5 157,900 - -1.6 157,970 - +1.0 157,970 - +0.6 157,973 + +1.5 157,974 - -1.4 157,974 - +0.3 157,974 - -0.1 158,326 - DZA65_RS00685 0.30 -0.7 158,626 - DZA65_RS00685 0.58 +0.3 158,632 - DZA65_RS00685 0.59 -1.2 158,731 - DZA65_RS00685 0.68 -1.3 158,803 + DZA65_RS00685 0.75 -0.9 158,865 + DZA65_RS00685 0.81 +1.6 158,865 + DZA65_RS00685 0.81 +0.9 158,931 + DZA65_RS00685 0.87 -0.6 158,931 + DZA65_RS00685 0.87 -1.0 158,931 + DZA65_RS00685 0.87 -0.5 158,932 - DZA65_RS00685 0.87 -0.4 158,932 - DZA65_RS00685 0.87 -2.6 158,932 - DZA65_RS00685 0.87 -1.8 158,932 - DZA65_RS00685 0.87 -1.4 158,957 - DZA65_RS00685 0.89 +0.3 159,059 + +1.1 159,060 - -1.3 159,082 + -1.1 159,082 + -0.2 159,083 - +0.9 159,083 - +1.5 159,158 + -0.5 159,227 + DZA65_RS00690 0.16 +0.3 159,227 + DZA65_RS00690 0.16 -0.7 159,228 - DZA65_RS00690 0.16 -0.5 159,228 - +1.9 159,228 - DZA65_RS00690 0.16 +0.7 159,228 - DZA65_RS00690 0.16 -0.7 159,228 - DZA65_RS00690 0.16 -0.2 159,228 - DZA65_RS00690 0.16 +0.7 159,322 + DZA65_RS00690 0.27 +0.9 159,322 + DZA65_RS00690 0.27 -0.7 159,322 + DZA65_RS00690 0.27 -0.7 159,323 - DZA65_RS00690 0.27 +2.5 159,323 - DZA65_RS00690 0.27 -0.2 159,323 - DZA65_RS00690 0.27 +0.5 159,323 - DZA65_RS00690 0.27 +1.0 159,357 - DZA65_RS00690 0.31 +1.3 159,412 + DZA65_RS00690 0.37 -0.9 159,413 - DZA65_RS00690 0.37 -0.4 159,501 - DZA65_RS00690 0.47 +1.2 159,567 + DZA65_RS00690 0.54 +1.2 159,567 + DZA65_RS00690 0.54 -0.7 159,567 + DZA65_RS00690 0.54 +1.2 159,567 + DZA65_RS00690 0.54 +0.4 159,567 + DZA65_RS00690 0.54 +1.9 159,567 + DZA65_RS00690 0.54 -0.8 159,567 + DZA65_RS00690 0.54 -0.4 159,567 + DZA65_RS00690 0.54 +0.3 159,568 - DZA65_RS00690 0.54 +0.5 159,568 - DZA65_RS00690 0.54 -1.9 159,568 - DZA65_RS00690 0.54 +0.2 159,568 - DZA65_RS00690 0.54 +0.8 159,568 - +1.3 159,568 - DZA65_RS00690 0.54 +2.1 159,568 - DZA65_RS00690 0.54 -0.9 159,568 - DZA65_RS00690 0.54 +1.1 159,568 - DZA65_RS00690 0.54 -0.4 159,568 - DZA65_RS00690 0.54 -2.6 159,610 + DZA65_RS00690 0.59 -1.1 159,610 + DZA65_RS00690 0.59 +1.1 159,613 + DZA65_RS00690 0.59 -1.2 159,613 + DZA65_RS00690 0.59 -0.1 159,613 + DZA65_RS00690 0.59 -0.1 159,613 + DZA65_RS00690 0.59 -0.5 159,614 - DZA65_RS00690 0.59 +0.9 159,614 - DZA65_RS00690 0.59 -0.9 159,650 + DZA65_RS00690 0.63 +0.7 159,679 + DZA65_RS00690 0.66 +0.6 159,679 + DZA65_RS00690 0.66 +0.3 159,679 + DZA65_RS00690 0.66 +0.1 159,680 - DZA65_RS00690 0.67 -1.8 159,680 - DZA65_RS00690 0.67 -1.9 159,680 - DZA65_RS00690 0.67 -0.1 159,680 - DZA65_RS00690 0.67 +0.5 159,700 + DZA65_RS00690 0.69 +1.1 159,701 - DZA65_RS00690 0.69 +0.3 159,701 - DZA65_RS00690 0.69 +0.6 159,701 - DZA65_RS00690 0.69 -1.7 159,704 + DZA65_RS00690 0.69 -1.7 159,704 + DZA65_RS00690 0.69 -0.9 159,704 + DZA65_RS00690 0.69 -0.5 159,890 + DZA65_RS00690 0.90 -0.1 159,990 + -0.5 159,995 + +1.6 159,995 + -0.1 159,995 + -1.3 159,996 - +0.2 159,996 - -0.3 160,023 + -0.6 160,023 + +0.9 160,024 - +0.6 160,024 - -0.5 160,024 - -1.9 160,045 + +0.5 160,045 + -0.1 160,045 + +0.1 160,045 + -0.1 160,045 + -0.2 160,046 - +0.7
Or see this region's nucleotide sequence