Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00355 and DZA65_RS00360 are separated by 96 nucleotides DZA65_RS00360 and DZA65_RS00365 are separated by 358 nucleotides DZA65_RS00365 and DZA65_RS00370 are separated by 339 nucleotides
DZA65_RS00355: DZA65_RS00355 - argininosuccinate synthase, at 84,318 to 85,667
_RS00355
DZA65_RS00360: DZA65_RS00360 - MarR family transcriptional regulator, at 85,764 to 86,264
_RS00360
DZA65_RS00365: DZA65_RS00365 - DMT family transporter, at 86,623 to 87,516
_RS00365
DZA65_RS00370: DZA65_RS00370 - pseudouridine-5'-phosphate glycosidase, at 87,856 to 88,806
_RS00370
Position (kb) 86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 85.666 kb on - strand at 85.682 kb on + strand at 85.682 kb on + strand at 85.682 kb on + strand at 85.682 kb on + strand at 85.683 kb on - strand at 85.719 kb on - strand at 85.766 kb on - strand at 86.034 kb on + strand, within DZA65_RS00360 at 86.034 kb on + strand at 86.034 kb on + strand, within DZA65_RS00360 at 86.056 kb on + strand, within DZA65_RS00360 at 86.056 kb on + strand, within DZA65_RS00360 at 86.056 kb on + strand, within DZA65_RS00360 at 86.057 kb on - strand, within DZA65_RS00360 at 86.116 kb on + strand, within DZA65_RS00360 at 86.116 kb on + strand, within DZA65_RS00360 at 86.116 kb on + strand, within DZA65_RS00360 at 86.117 kb on - strand, within DZA65_RS00360 at 86.117 kb on - strand, within DZA65_RS00360 at 86.117 kb on - strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand, within DZA65_RS00360 at 86.127 kb on + strand at 86.128 kb on - strand, within DZA65_RS00360 at 86.128 kb on - strand, within DZA65_RS00360 at 86.128 kb on - strand, within DZA65_RS00360 at 86.128 kb on - strand, within DZA65_RS00360 at 86.237 kb on + strand at 86.238 kb on - strand at 86.245 kb on - strand at 86.283 kb on + strand at 86.289 kb on - strand at 86.307 kb on - strand at 86.324 kb on + strand at 86.344 kb on + strand at 86.345 kb on - strand at 86.349 kb on + strand at 86.349 kb on + strand at 86.350 kb on - strand at 86.352 kb on + strand at 86.353 kb on - strand at 86.427 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.462 kb on + strand at 86.463 kb on - strand at 86.463 kb on - strand at 86.463 kb on - strand at 86.463 kb on - strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.472 kb on + strand at 86.473 kb on - strand at 86.473 kb on - strand at 86.473 kb on - strand at 86.493 kb on + strand at 86.493 kb on + strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.494 kb on - strand at 86.648 kb on - strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.670 kb on + strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.671 kb on - strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.674 kb on + strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.675 kb on - strand at 86.715 kb on - strand, within DZA65_RS00365 at 86.715 kb on - strand, within DZA65_RS00365 at 86.751 kb on + strand, within DZA65_RS00365 at 86.751 kb on + strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.752 kb on - strand, within DZA65_RS00365 at 86.757 kb on + strand, within DZA65_RS00365 at 86.757 kb on + strand, within DZA65_RS00365 at 86.758 kb on - strand, within DZA65_RS00365 at 86.758 kb on - strand, within DZA65_RS00365 at 86.758 kb on - strand, within DZA65_RS00365 at 86.807 kb on + strand, within DZA65_RS00365 at 86.824 kb on - strand, within DZA65_RS00365 at 86.995 kb on - strand, within DZA65_RS00365 at 87.072 kb on + strand, within DZA65_RS00365 at 87.072 kb on + strand, within DZA65_RS00365 at 87.073 kb on - strand, within DZA65_RS00365 at 87.073 kb on - strand, within DZA65_RS00365 at 87.073 kb on - strand, within DZA65_RS00365 at 87.244 kb on + strand, within DZA65_RS00365 at 87.274 kb on + strand, within DZA65_RS00365 at 87.274 kb on + strand, within DZA65_RS00365 at 87.274 kb on + strand, within DZA65_RS00365 at 87.275 kb on - strand, within DZA65_RS00365 at 87.275 kb on - strand, within DZA65_RS00365 at 87.275 kb on - strand, within DZA65_RS00365 at 87.275 kb on - strand, within DZA65_RS00365 at 87.303 kb on + strand, within DZA65_RS00365 at 87.303 kb on + strand, within DZA65_RS00365 at 87.303 kb on + strand, within DZA65_RS00365 at 87.318 kb on + strand, within DZA65_RS00365 at 87.318 kb on + strand, within DZA65_RS00365 at 87.318 kb on + strand, within DZA65_RS00365 at 87.318 kb on + strand, within DZA65_RS00365 at 87.318 kb on + strand, within DZA65_RS00365 at 87.319 kb on - strand, within DZA65_RS00365 at 87.319 kb on - strand at 87.319 kb on - strand, within DZA65_RS00365 at 87.319 kb on - strand, within DZA65_RS00365 at 87.360 kb on - strand, within DZA65_RS00365 at 87.372 kb on - strand, within DZA65_RS00365 at 87.450 kb on + strand at 87.450 kb on + strand at 87.458 kb on + strand at 87.534 kb on + strand at 87.535 kb on - strand at 87.535 kb on - strand at 87.567 kb on - strand at 87.571 kb on + strand at 87.575 kb on - strand at 87.576 kb on + strand at 87.581 kb on - strand at 87.590 kb on + strand at 87.596 kb on + strand at 87.597 kb on - strand at 87.597 kb on - strand at 87.597 kb on - strand at 87.597 kb on - strand at 87.609 kb on + strand at 87.681 kb on + strand at 87.681 kb on + strand at 87.686 kb on + strand at 87.713 kb on - strand at 87.724 kb on + strand at 87.724 kb on + strand at 87.724 kb on + strand at 87.725 kb on - strand at 87.725 kb on - strand at 87.725 kb on - strand at 87.725 kb on - strand at 87.725 kb on - strand at 87.725 kb on - strand at 87.760 kb on + strand at 87.760 kb on + strand at 87.761 kb on - strand at 87.761 kb on - strand at 87.761 kb on - strand at 87.761 kb on - strand at 87.761 kb on - strand at 87.787 kb on + strand at 87.787 kb on + strand at 87.788 kb on - strand at 87.819 kb on + strand at 87.822 kb on - strand at 87.822 kb on - strand at 87.822 kb on - strand at 87.831 kb on + strand at 87.831 kb on + strand at 87.831 kb on + strand at 87.831 kb on + strand at 87.831 kb on + strand at 87.832 kb on - strand at 87.832 kb on - strand at 87.832 kb on - strand at 87.852 kb on + strand at 87.852 kb on + strand at 87.852 kb on + strand at 87.853 kb on - strand at 87.853 kb on - strand at 87.853 kb on - strand at 87.853 kb on - strand at 87.853 kb on - strand at 87.853 kb on - strand at 87.855 kb on + strand at 87.855 kb on + strand at 87.855 kb on + strand at 87.855 kb on + strand at 87.855 kb on + strand at 87.856 kb on - strand at 87.856 kb on - strand at 87.856 kb on - strand at 87.856 kb on - strand at 87.905 kb on + strand at 87.905 kb on + strand at 87.906 kb on - strand at 87.906 kb on - strand at 87.927 kb on + strand at 88.080 kb on + strand, within DZA65_RS00370 at 88.080 kb on + strand, within DZA65_RS00370 at 88.080 kb on + strand, within DZA65_RS00370 at 88.080 kb on + strand, within DZA65_RS00370 at 88.080 kb on + strand, within DZA65_RS00370 at 88.080 kb on + strand, within DZA65_RS00370 at 88.080 kb on + strand, within DZA65_RS00370 at 88.081 kb on - strand, within DZA65_RS00370 at 88.081 kb on - strand, within DZA65_RS00370 at 88.081 kb on - strand, within DZA65_RS00370 at 88.081 kb on - strand, within DZA65_RS00370 at 88.081 kb on - strand, within DZA65_RS00370 at 88.081 kb on - strand, within DZA65_RS00370 at 88.081 kb on - strand, within DZA65_RS00370 at 88.259 kb on + strand, within DZA65_RS00370 at 88.259 kb on + strand, within DZA65_RS00370 at 88.259 kb on + strand, within DZA65_RS00370 at 88.260 kb on - strand, within DZA65_RS00370 at 88.260 kb on - strand, within DZA65_RS00370 at 88.260 kb on - strand, within DZA65_RS00370 at 88.260 kb on - strand, within DZA65_RS00370 at 88.288 kb on - strand, within DZA65_RS00370 at 88.353 kb on + strand, within DZA65_RS00370 at 88.353 kb on + strand, within DZA65_RS00370 at 88.353 kb on + strand, within DZA65_RS00370 at 88.353 kb on + strand, within DZA65_RS00370 at 88.353 kb on + strand, within DZA65_RS00370 at 88.354 kb on - strand, within DZA65_RS00370 at 88.354 kb on - strand, within DZA65_RS00370 at 88.354 kb on - strand at 88.354 kb on - strand, within DZA65_RS00370 at 88.354 kb on - strand, within DZA65_RS00370 at 88.381 kb on + strand, within DZA65_RS00370 at 88.381 kb on + strand, within DZA65_RS00370 at 88.415 kb on - strand, within DZA65_RS00370 at 88.415 kb on - strand, within DZA65_RS00370
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 85,666 - -1.2 85,682 + +0.2 85,682 + +0.6 85,682 + -0.1 85,682 + +1.5 85,683 - -0.2 85,719 - -1.0 85,766 - -0.1 86,034 + DZA65_RS00360 0.54 +0.6 86,034 + -0.7 86,034 + DZA65_RS00360 0.54 -0.9 86,056 + DZA65_RS00360 0.58 +0.4 86,056 + DZA65_RS00360 0.58 -2.4 86,056 + DZA65_RS00360 0.58 -0.9 86,057 - DZA65_RS00360 0.58 +0.3 86,116 + DZA65_RS00360 0.70 -1.6 86,116 + DZA65_RS00360 0.70 -1.5 86,116 + DZA65_RS00360 0.70 -1.7 86,117 - DZA65_RS00360 0.70 -1.7 86,117 - DZA65_RS00360 0.70 -2.1 86,117 - DZA65_RS00360 0.70 +0.0 86,127 + DZA65_RS00360 0.72 -0.7 86,127 + DZA65_RS00360 0.72 -1.3 86,127 + DZA65_RS00360 0.72 -1.7 86,127 + DZA65_RS00360 0.72 -2.4 86,127 + DZA65_RS00360 0.72 -0.1 86,127 + DZA65_RS00360 0.72 -1.9 86,127 + -0.1 86,128 - DZA65_RS00360 0.73 -0.4 86,128 - DZA65_RS00360 0.73 -0.3 86,128 - DZA65_RS00360 0.73 -1.6 86,128 - DZA65_RS00360 0.73 -1.0 86,237 + -1.9 86,238 - -0.6 86,245 - +1.5 86,283 + -0.5 86,289 - +0.2 86,307 - -0.1 86,324 + -2.6 86,344 + -0.4 86,345 - -1.0 86,349 + -0.4 86,349 + +0.2 86,350 - -1.6 86,352 + +0.9 86,353 - +0.3 86,427 + -0.4 86,462 + -0.3 86,462 + -0.3 86,462 + -0.7 86,462 + +0.6 86,462 + +0.3 86,463 - -2.7 86,463 - -0.1 86,463 - -2.2 86,463 - -1.3 86,472 + +0.3 86,472 + -1.1 86,472 + -1.2 86,472 + +1.1 86,472 + +0.6 86,473 - -1.6 86,473 - +1.9 86,473 - -1.3 86,493 + +1.1 86,493 + -0.0 86,494 - -2.4 86,494 - -0.9 86,494 - +0.2 86,494 - +0.2 86,494 - -1.0 86,494 - +1.2 86,648 - -1.6 86,670 + -0.3 86,670 + +0.3 86,670 + -1.1 86,670 + -0.3 86,670 + -1.4 86,670 + -1.1 86,670 + +0.5 86,670 + -0.8 86,670 + -1.4 86,670 + -0.7 86,671 - -0.8 86,671 - -1.1 86,671 - -0.9 86,671 - +0.9 86,671 - +0.2 86,671 - -2.6 86,671 - -0.5 86,671 - -1.0 86,671 - -0.9 86,671 - -0.6 86,671 - -1.7 86,671 - -1.0 86,671 - -1.4 86,671 - -1.1 86,671 - -0.7 86,671 - +0.4 86,674 + -1.4 86,674 + -0.7 86,674 + +0.9 86,674 + -2.3 86,674 + -2.3 86,674 + -3.1 86,674 + -1.4 86,674 + -2.3 86,674 + -0.0 86,674 + +0.6 86,674 + -1.0 86,674 + -0.3 86,674 + +1.5 86,674 + -1.3 86,674 + -1.1 86,674 + -0.7 86,674 + -0.9 86,674 + -1.3 86,674 + +0.2 86,675 - -0.4 86,675 - -1.9 86,675 - -2.1 86,675 - -1.1 86,675 - -1.0 86,675 - -0.7 86,675 - -1.2 86,675 - -1.9 86,675 - +0.2 86,675 - -1.3 86,675 - -0.2 86,675 - -2.6 86,675 - +1.1 86,675 - -2.4 86,715 - DZA65_RS00365 0.10 -0.6 86,715 - DZA65_RS00365 0.10 -2.1 86,751 + DZA65_RS00365 0.14 -1.7 86,751 + DZA65_RS00365 0.14 -2.9 86,752 - DZA65_RS00365 0.14 -1.7 86,752 - DZA65_RS00365 0.14 +2.2 86,752 - DZA65_RS00365 0.14 -1.6 86,752 - DZA65_RS00365 0.14 -0.4 86,757 + DZA65_RS00365 0.15 -0.1 86,757 + DZA65_RS00365 0.15 -1.7 86,758 - DZA65_RS00365 0.15 +0.3 86,758 - DZA65_RS00365 0.15 -0.7 86,758 - DZA65_RS00365 0.15 -2.1 86,807 + DZA65_RS00365 0.21 -2.0 86,824 - DZA65_RS00365 0.22 -0.7 86,995 - DZA65_RS00365 0.42 -1.4 87,072 + DZA65_RS00365 0.50 -1.4 87,072 + DZA65_RS00365 0.50 -1.9 87,073 - DZA65_RS00365 0.50 -1.9 87,073 - DZA65_RS00365 0.50 -2.3 87,073 - DZA65_RS00365 0.50 -1.0 87,244 + DZA65_RS00365 0.69 -1.2 87,274 + DZA65_RS00365 0.73 -0.1 87,274 + DZA65_RS00365 0.73 +0.9 87,274 + DZA65_RS00365 0.73 -0.5 87,275 - DZA65_RS00365 0.73 -0.6 87,275 - DZA65_RS00365 0.73 -0.9 87,275 - DZA65_RS00365 0.73 -0.1 87,275 - DZA65_RS00365 0.73 -2.5 87,303 + DZA65_RS00365 0.76 -0.1 87,303 + DZA65_RS00365 0.76 -1.1 87,303 + DZA65_RS00365 0.76 -1.4 87,318 + DZA65_RS00365 0.78 -0.7 87,318 + DZA65_RS00365 0.78 -1.2 87,318 + DZA65_RS00365 0.78 -1.4 87,318 + DZA65_RS00365 0.78 -1.6 87,318 + DZA65_RS00365 0.78 -0.1 87,319 - DZA65_RS00365 0.78 -2.8 87,319 - -0.7 87,319 - DZA65_RS00365 0.78 -2.3 87,319 - DZA65_RS00365 0.78 -1.8 87,360 - DZA65_RS00365 0.82 -3.6 87,372 - DZA65_RS00365 0.84 -0.8 87,450 + -0.3 87,450 + -0.3 87,458 + +2.1 87,534 + -0.0 87,535 - +0.9 87,535 - -0.7 87,567 - -0.2 87,571 + -2.6 87,575 - +0.2 87,576 + +0.9 87,581 - -0.1 87,590 + +1.5 87,596 + +0.3 87,597 - -0.8 87,597 - -0.4 87,597 - -1.1 87,597 - +0.6 87,609 + +0.2 87,681 + +0.9 87,681 + +1.1 87,686 + +0.7 87,713 - +0.0 87,724 + +0.9 87,724 + -0.1 87,724 + -1.1 87,725 - +0.1 87,725 - -0.5 87,725 - -0.3 87,725 - +1.6 87,725 - -2.0 87,725 - +1.9 87,760 + +0.2 87,760 + +0.7 87,761 - -1.9 87,761 - +1.4 87,761 - -0.8 87,761 - +3.8 87,761 - +1.2 87,787 + -0.5 87,787 + -0.7 87,788 - +0.9 87,819 + +0.4 87,822 - -0.3 87,822 - -0.7 87,822 - -0.3 87,831 + -0.0 87,831 + -0.6 87,831 + -1.0 87,831 + -1.4 87,831 + -0.7 87,832 - -0.3 87,832 - +0.9 87,832 - -1.1 87,852 + -1.3 87,852 + -0.8 87,852 + -0.5 87,853 - -0.2 87,853 - -0.1 87,853 - +0.7 87,853 - -0.0 87,853 - -0.1 87,853 - -1.4 87,855 + +0.9 87,855 + -1.4 87,855 + +0.2 87,855 + +0.9 87,855 + -1.4 87,856 - +0.3 87,856 - -1.1 87,856 - +0.6 87,856 - +1.1 87,905 + -0.5 87,905 + -1.4 87,906 - +0.2 87,906 - -1.7 87,927 + -0.7 88,080 + DZA65_RS00370 0.24 +1.3 88,080 + DZA65_RS00370 0.24 +0.5 88,080 + DZA65_RS00370 0.24 +0.5 88,080 + DZA65_RS00370 0.24 -0.4 88,080 + DZA65_RS00370 0.24 +1.3 88,080 + DZA65_RS00370 0.24 -1.0 88,080 + DZA65_RS00370 0.24 +0.3 88,081 - DZA65_RS00370 0.24 -1.1 88,081 - DZA65_RS00370 0.24 +0.7 88,081 - DZA65_RS00370 0.24 -1.1 88,081 - DZA65_RS00370 0.24 +0.8 88,081 - DZA65_RS00370 0.24 +0.2 88,081 - DZA65_RS00370 0.24 -1.1 88,081 - DZA65_RS00370 0.24 +0.5 88,259 + DZA65_RS00370 0.42 -1.2 88,259 + DZA65_RS00370 0.42 +0.0 88,259 + DZA65_RS00370 0.42 +0.4 88,260 - DZA65_RS00370 0.42 +0.5 88,260 - DZA65_RS00370 0.42 +0.1 88,260 - DZA65_RS00370 0.42 -1.4 88,260 - DZA65_RS00370 0.42 -0.8 88,288 - DZA65_RS00370 0.45 +0.9 88,353 + DZA65_RS00370 0.52 -1.2 88,353 + DZA65_RS00370 0.52 +1.2 88,353 + DZA65_RS00370 0.52 +1.6 88,353 + DZA65_RS00370 0.52 +0.9 88,353 + DZA65_RS00370 0.52 +0.6 88,354 - DZA65_RS00370 0.52 +1.0 88,354 - DZA65_RS00370 0.52 +0.2 88,354 - +0.9 88,354 - DZA65_RS00370 0.52 +1.4 88,354 - DZA65_RS00370 0.52 -0.2 88,381 + DZA65_RS00370 0.55 -0.3 88,381 + DZA65_RS00370 0.55 -2.4 88,415 - DZA65_RS00370 0.59 +0.9 88,415 - DZA65_RS00370 0.59 +0.3
Or see this region's nucleotide sequence