Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00180

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00170 and DZA65_RS00175 are separated by 1 nucleotidesDZA65_RS00175 and DZA65_RS00180 are separated by 28 nucleotidesDZA65_RS00180 and DZA65_RS00185 are separated by 325 nucleotides DZA65_RS00170: DZA65_RS00170 - ABC transporter permease, at 38,554 to 39,444 _RS00170 DZA65_RS00175: DZA65_RS00175 - ABC transporter permease, at 39,446 to 40,387 _RS00175 DZA65_RS00180: DZA65_RS00180 - TIGR04028 family ABC transporter substrate-binding protein, at 40,416 to 42,059 _RS00180 DZA65_RS00185: DZA65_RS00185 - valine--pyruvate transaminase, at 42,385 to 43,641 _RS00185 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 39.444 kb on + strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.489 kb on + strandat 39.557 kb on + strand, within DZA65_RS00175at 39.557 kb on + strand, within DZA65_RS00175at 39.558 kb on - strand, within DZA65_RS00175at 39.722 kb on + strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 40.091 kb on + strand, within DZA65_RS00175at 40.232 kb on + strand, within DZA65_RS00175at 40.324 kb on + strandat 40.324 kb on + strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.380 kb on - strandat 40.417 kb on + strandat 40.417 kb on + strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.456 kb on - strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.549 kb on + strandat 40.549 kb on + strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.705 kb on + strand, within DZA65_RS00180at 40.719 kb on + strand, within DZA65_RS00180at 40.719 kb on + strand, within DZA65_RS00180at 40.720 kb on - strand, within DZA65_RS00180at 40.740 kb on + strand, within DZA65_RS00180at 41.030 kb on - strand, within DZA65_RS00180at 41.083 kb on + strand, within DZA65_RS00180at 41.083 kb on + strand, within DZA65_RS00180at 41.119 kb on + strand, within DZA65_RS00180at 41.212 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.307 kb on + strand, within DZA65_RS00180at 41.307 kb on + strand, within DZA65_RS00180at 41.308 kb on - strand, within DZA65_RS00180at 41.308 kb on - strandat 41.332 kb on + strand, within DZA65_RS00180at 41.332 kb on + strand, within DZA65_RS00180at 41.332 kb on + strand, within DZA65_RS00180at 41.332 kb on + strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.350 kb on + strandat 41.350 kb on + strand, within DZA65_RS00180at 41.350 kb on + strand, within DZA65_RS00180at 41.351 kb on - strand, within DZA65_RS00180at 41.351 kb on - strand, within DZA65_RS00180at 41.351 kb on - strand, within DZA65_RS00180at 41.393 kb on - strand, within DZA65_RS00180at 41.582 kb on - strand, within DZA65_RS00180at 41.623 kb on + strand, within DZA65_RS00180at 41.623 kb on + strand, within DZA65_RS00180at 41.623 kb on + strand, within DZA65_RS00180at 41.624 kb on - strand, within DZA65_RS00180at 41.624 kb on - strand, within DZA65_RS00180at 41.624 kb on - strand, within DZA65_RS00180at 41.624 kb on - strand, within DZA65_RS00180at 41.624 kb on - strand, within DZA65_RS00180at 41.624 kb on - strand, within DZA65_RS00180at 41.624 kb on - strand, within DZA65_RS00180at 41.627 kb on + strand, within DZA65_RS00180at 41.627 kb on + strand, within DZA65_RS00180at 41.627 kb on + strand, within DZA65_RS00180at 41.627 kb on + strand, within DZA65_RS00180at 41.627 kb on + strand, within DZA65_RS00180at 41.628 kb on - strand, within DZA65_RS00180at 41.628 kb on - strand, within DZA65_RS00180at 41.628 kb on - strand, within DZA65_RS00180at 41.628 kb on - strand, within DZA65_RS00180at 41.628 kb on - strand, within DZA65_RS00180at 41.628 kb on - strand, within DZA65_RS00180at 41.677 kb on + strand, within DZA65_RS00180at 41.677 kb on + strand, within DZA65_RS00180at 41.677 kb on + strand, within DZA65_RS00180at 41.677 kb on + strand, within DZA65_RS00180at 41.677 kb on + strand, within DZA65_RS00180at 41.678 kb on - strand, within DZA65_RS00180at 41.761 kb on + strand, within DZA65_RS00180at 41.761 kb on + strand, within DZA65_RS00180at 41.762 kb on - strand, within DZA65_RS00180at 41.762 kb on - strand, within DZA65_RS00180at 41.762 kb on - strand, within DZA65_RS00180at 41.837 kb on - strand, within DZA65_RS00180at 41.900 kb on + strandat 41.902 kb on + strandat 41.902 kb on + strandat 41.902 kb on + strandat 41.902 kb on + strandat 41.903 kb on - strandat 41.903 kb on - strandat 41.903 kb on - strandat 41.932 kb on + strandat 41.932 kb on + strandat 41.933 kb on - strandat 41.933 kb on - strandat 41.933 kb on - strandat 41.942 kb on + strandat 41.995 kb on - strandat 42.015 kb on + strandat 42.015 kb on + strandat 42.016 kb on - strandat 42.077 kb on + strandat 42.088 kb on + strandat 42.089 kb on - strandat 42.089 kb on - strandat 42.089 kb on - strandat 42.093 kb on - strandat 42.096 kb on + strandat 42.097 kb on - strandat 42.128 kb on + strandat 42.164 kb on + strandat 42.164 kb on + strandat 42.164 kb on + strandat 42.164 kb on + strandat 42.164 kb on + strandat 42.164 kb on + strandat 42.165 kb on - strandat 42.165 kb on - strandat 42.165 kb on - strandat 42.165 kb on - strandat 42.178 kb on + strandat 42.194 kb on + strandat 42.195 kb on - strandat 42.208 kb on + strandat 42.208 kb on + strandat 42.208 kb on + strandat 42.208 kb on + strandat 42.208 kb on + strandat 42.209 kb on - strandat 42.209 kb on - strandat 42.209 kb on - strandat 42.209 kb on - strandat 42.212 kb on + strandat 42.212 kb on + strandat 42.212 kb on + strandat 42.212 kb on + strandat 42.213 kb on - strandat 42.213 kb on - strandat 42.213 kb on - strandat 42.213 kb on - strandat 42.213 kb on - strandat 42.227 kb on + strandat 42.277 kb on + strandat 42.278 kb on - strandat 42.278 kb on - strandat 42.278 kb on - strandat 42.285 kb on + strandat 42.286 kb on - strandat 42.286 kb on - strandat 42.286 kb on - strandat 42.286 kb on - strandat 42.286 kb on - strandat 42.289 kb on + strandat 42.289 kb on + strandat 42.289 kb on + strandat 42.289 kb on + strandat 42.289 kb on + strandat 42.290 kb on - strandat 42.290 kb on - strandat 42.290 kb on - strandat 42.290 kb on - strandat 42.346 kb on + strandat 42.346 kb on + strandat 42.346 kb on + strandat 42.346 kb on + strandat 42.346 kb on + strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.347 kb on - strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.470 kb on + strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.471 kb on - strandat 42.530 kb on + strand, within DZA65_RS00185at 42.530 kb on + strand, within DZA65_RS00185at 42.530 kb on + strand, within DZA65_RS00185at 42.531 kb on - strand, within DZA65_RS00185at 42.531 kb on - strand, within DZA65_RS00185at 42.531 kb on - strand, within DZA65_RS00185at 42.531 kb on - strand, within DZA65_RS00185at 42.575 kb on + strand, within DZA65_RS00185at 42.576 kb on - strand, within DZA65_RS00185at 42.671 kb on + strand, within DZA65_RS00185at 42.672 kb on - strand, within DZA65_RS00185at 42.713 kb on + strand, within DZA65_RS00185at 42.713 kb on + strand, within DZA65_RS00185at 42.957 kb on + strand, within DZA65_RS00185at 42.957 kb on + strand, within DZA65_RS00185at 42.957 kb on + strand, within DZA65_RS00185at 42.958 kb on - strand, within DZA65_RS00185at 42.981 kb on - strand, within DZA65_RS00185

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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39,444 + +0.1
39,445 - +0.4
39,445 - +0.4
39,445 - +0.1
39,489 + +0.3
39,557 + DZA65_RS00175 0.12 -0.3
39,557 + DZA65_RS00175 0.12 -0.3
39,558 - DZA65_RS00175 0.12 +0.6
39,722 + DZA65_RS00175 0.29 -0.5
39,723 - DZA65_RS00175 0.29 -0.2
39,723 - DZA65_RS00175 0.29 +1.4
39,723 - DZA65_RS00175 0.29 -0.1
40,091 + DZA65_RS00175 0.68 +1.5
40,232 + DZA65_RS00175 0.83 -0.1
40,324 + +1.6
40,324 + -0.3
40,325 - -1.3
40,325 - +1.6
40,325 - -0.3
40,325 - -0.4
40,325 - +1.2
40,325 - -0.3
40,374 + -0.6
40,374 + -3.0
40,374 + +0.9
40,374 + +1.6
40,374 + +0.2
40,374 + -1.4
40,375 - -1.9
40,375 - -0.2
40,375 - -1.1
40,375 - -0.7
40,380 - +1.9
40,417 + +0.4
40,417 + -1.1
40,418 - +1.1
40,418 - +1.9
40,418 - +0.4
40,418 - +0.7
40,418 - -2.0
40,438 + -0.3
40,438 + -1.7
40,438 + -2.1
40,438 + +1.1
40,438 + -0.4
40,439 - +0.2
40,439 - -0.7
40,439 - +2.4
40,439 - -0.1
40,456 - +0.2
40,531 + -1.1
40,531 + -0.3
40,531 + +1.1
40,531 + -0.6
40,531 + -0.1
40,531 + +0.6
40,531 + -0.2
40,531 + -0.4
40,531 + +1.3
40,531 + -1.4
40,532 - -0.5
40,532 - +0.1
40,532 - -0.1
40,532 - +2.2
40,532 - -1.4
40,532 - +2.5
40,532 - -1.7
40,532 - +0.4
40,532 - -0.4
40,532 - -1.4
40,549 + +0.2
40,549 + +0.4
40,550 - -1.1
40,550 - -0.5
40,550 - -1.0
40,550 - +1.3
40,550 - -2.1
40,550 - +1.1
40,705 + DZA65_RS00180 0.18 +0.4
40,719 + DZA65_RS00180 0.18 +1.4
40,719 + DZA65_RS00180 0.18 -0.4
40,720 - DZA65_RS00180 0.18 -0.3
40,740 + DZA65_RS00180 0.20 -1.7
41,030 - DZA65_RS00180 0.37 +0.4
41,083 + DZA65_RS00180 0.41 -0.2
41,083 + DZA65_RS00180 0.41 +0.4
41,119 + DZA65_RS00180 0.43 -0.1
41,212 + DZA65_RS00180 0.48 -0.7
41,251 + DZA65_RS00180 0.51 +1.6
41,251 + DZA65_RS00180 0.51 -0.3
41,251 + DZA65_RS00180 0.51 +0.1
41,251 + DZA65_RS00180 0.51 +0.7
41,251 + DZA65_RS00180 0.51 -1.9
41,251 + DZA65_RS00180 0.51 -0.1
41,252 - DZA65_RS00180 0.51 +0.4
41,252 - DZA65_RS00180 0.51 -2.3
41,252 - DZA65_RS00180 0.51 -0.1
41,252 - DZA65_RS00180 0.51 +0.9
41,252 - DZA65_RS00180 0.51 +0.9
41,252 - DZA65_RS00180 0.51 -1.7
41,307 + DZA65_RS00180 0.54 -2.0
41,307 + DZA65_RS00180 0.54 -1.4
41,308 - DZA65_RS00180 0.54 +0.4
41,308 - +0.9
41,332 + DZA65_RS00180 0.56 -0.4
41,332 + DZA65_RS00180 0.56 -0.6
41,332 + DZA65_RS00180 0.56 -1.7
41,332 + DZA65_RS00180 0.56 -1.2
41,333 - DZA65_RS00180 0.56 +0.6
41,333 - DZA65_RS00180 0.56 +0.9
41,333 - DZA65_RS00180 0.56 -2.3
41,333 - DZA65_RS00180 0.56 +0.1
41,333 - DZA65_RS00180 0.56 -1.4
41,333 - DZA65_RS00180 0.56 +0.2
41,333 - DZA65_RS00180 0.56 +0.6
41,333 - DZA65_RS00180 0.56 -0.1
41,350 + -1.4
41,350 + DZA65_RS00180 0.57 -0.4
41,350 + DZA65_RS00180 0.57 -1.4
41,351 - DZA65_RS00180 0.57 +0.4
41,351 - DZA65_RS00180 0.57 +0.4
41,351 - DZA65_RS00180 0.57 +0.2
41,393 - DZA65_RS00180 0.59 -0.6
41,582 - DZA65_RS00180 0.71 +0.2
41,623 + DZA65_RS00180 0.73 +1.2
41,623 + DZA65_RS00180 0.73 +0.9
41,623 + DZA65_RS00180 0.73 -0.0
41,624 - DZA65_RS00180 0.73 +0.9
41,624 - DZA65_RS00180 0.73 -1.3
41,624 - DZA65_RS00180 0.73 -1.7
41,624 - DZA65_RS00180 0.73 +3.7
41,624 - DZA65_RS00180 0.73 +0.7
41,624 - DZA65_RS00180 0.73 -1.4
41,624 - DZA65_RS00180 0.73 +1.3
41,627 + DZA65_RS00180 0.74 -0.3
41,627 + DZA65_RS00180 0.74 -0.0
41,627 + DZA65_RS00180 0.74 -0.9
41,627 + DZA65_RS00180 0.74 -1.1
41,627 + DZA65_RS00180 0.74 +0.9
41,628 - DZA65_RS00180 0.74 -0.3
41,628 - DZA65_RS00180 0.74 -0.6
41,628 - DZA65_RS00180 0.74 -1.1
41,628 - DZA65_RS00180 0.74 -1.7
41,628 - DZA65_RS00180 0.74 +1.1
41,628 - DZA65_RS00180 0.74 -0.7
41,677 + DZA65_RS00180 0.77 -0.3
41,677 + DZA65_RS00180 0.77 +1.5
41,677 + DZA65_RS00180 0.77 -0.2
41,677 + DZA65_RS00180 0.77 +0.1
41,677 + DZA65_RS00180 0.77 -0.1
41,678 - DZA65_RS00180 0.77 -0.2
41,761 + DZA65_RS00180 0.82 -0.3
41,761 + DZA65_RS00180 0.82 -0.4
41,762 - DZA65_RS00180 0.82 -0.5
41,762 - DZA65_RS00180 0.82 +1.9
41,762 - DZA65_RS00180 0.82 +0.3
41,837 - DZA65_RS00180 0.86 +0.7
41,900 + +0.4
41,902 + -0.3
41,902 + +0.2
41,902 + -0.7
41,902 + -0.5
41,903 - -2.6
41,903 - +0.3
41,903 - -0.3
41,932 + +0.6
41,932 + +0.4
41,933 - +0.3
41,933 - +1.6
41,933 - +0.2
41,942 + +0.2
41,995 - +1.7
42,015 + -1.1
42,015 + -0.1
42,016 - -1.4
42,077 + +0.7
42,088 + -0.5
42,089 - +0.3
42,089 - +0.3
42,089 - +0.1
42,093 - -1.4
42,096 + -1.0
42,097 - -0.9
42,128 + +0.2
42,164 + -1.3
42,164 + -0.4
42,164 + +0.9
42,164 + +0.2
42,164 + -1.0
42,164 + -0.4
42,165 - +0.4
42,165 - +0.6
42,165 - -2.4
42,165 - +1.1
42,178 + -0.1
42,194 + -0.9
42,195 - +0.0
42,208 + +0.3
42,208 + -1.1
42,208 + -0.8
42,208 + +0.3
42,208 + -0.7
42,209 - +0.6
42,209 - -0.5
42,209 - -0.3
42,209 - -1.0
42,212 + -0.1
42,212 + -1.4
42,212 + -1.4
42,212 + +0.6
42,213 - -0.0
42,213 - -0.3
42,213 - +2.2
42,213 - +0.1
42,213 - -1.1
42,227 + -1.1
42,277 + -0.1
42,278 - +0.7
42,278 - +1.0
42,278 - +0.8
42,285 + -1.8
42,286 - -0.1
42,286 - -0.0
42,286 - +0.6
42,286 - -0.8
42,286 - +0.7
42,289 + +0.3
42,289 + -1.1
42,289 + +0.3
42,289 + -0.0
42,289 + +0.1
42,290 - +0.4
42,290 - -0.7
42,290 - -0.3
42,290 - +0.3
42,346 + -0.2
42,346 + +3.6
42,346 + +0.1
42,346 + +0.7
42,346 + +0.6
42,347 - +0.0
42,347 - +2.8
42,347 - -0.2
42,347 - -0.3
42,347 - -0.4
42,347 - +0.8
42,347 - -1.0
42,347 - -0.4
42,347 - -0.7
42,470 + -0.6
42,470 + -0.1
42,470 + -0.1
42,470 + +0.3
42,470 + +1.2
42,470 + +0.0
42,470 + -1.3
42,470 + +0.4
42,470 + -1.3
42,470 + +0.2
42,470 + +0.4
42,470 + -2.1
42,470 + -0.1
42,470 + -0.8
42,470 + -1.5
42,470 + -0.5
42,470 + -1.4
42,470 + -0.5
42,470 + +0.5
42,470 + -0.7
42,470 + -1.0
42,470 + +0.9
42,470 + -1.4
42,470 + +0.9
42,470 + +0.4
42,471 - -0.2
42,471 - +0.5
42,471 - -0.4
42,471 - -0.3
42,471 - +0.9
42,471 - -1.2
42,471 - +0.3
42,471 - +1.2
42,471 - -0.5
42,471 - +0.9
42,471 - +0.6
42,471 - -0.7
42,471 - -1.3
42,471 - +0.7
42,471 - -0.5
42,471 - +0.6
42,471 - -0.9
42,471 - +0.6
42,471 - -0.4
42,471 - +1.2
42,471 - -0.1
42,471 - +1.5
42,471 - +0.1
42,471 - +1.9
42,471 - +0.6
42,471 - -1.9
42,530 + DZA65_RS00185 0.12 -0.7
42,530 + DZA65_RS00185 0.12 +0.7
42,530 + DZA65_RS00185 0.12 +0.0
42,531 - DZA65_RS00185 0.12 +2.4
42,531 - DZA65_RS00185 0.12 -0.7
42,531 - DZA65_RS00185 0.12 -1.2
42,531 - DZA65_RS00185 0.12 -0.2
42,575 + DZA65_RS00185 0.15 +1.4
42,576 - DZA65_RS00185 0.15 -2.0
42,671 + DZA65_RS00185 0.23 -0.5
42,672 - DZA65_RS00185 0.23 -1.3
42,713 + DZA65_RS00185 0.26 +0.0
42,713 + DZA65_RS00185 0.26 -0.3
42,957 + DZA65_RS00185 0.46 -0.3
42,957 + DZA65_RS00185 0.46 -0.8
42,957 + DZA65_RS00185 0.46 -0.0
42,958 - DZA65_RS00185 0.46 +2.6
42,981 - DZA65_RS00185 0.47 +2.5

Or see this region's nucleotide sequence