Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21520

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,654,118	+		DZA65_RS21510	0.75	+0.2
4,654,118	+		DZA65_RS21510	0.75	+0.1
4,654,119	-		DZA65_RS21510	0.75	-2.0
4,654,119	-		DZA65_RS21510	0.75	-0.2
4,654,171	-		DZA65_RS21510	0.81	-1.6
4,654,171	-		DZA65_RS21510	0.81	+0.6
4,654,171	-		DZA65_RS21510	0.81	+0.1
4,654,171	-		DZA65_RS21510	0.81	-1.9
4,654,178	+		DZA65_RS21510	0.82	-2.3
4,654,178	+		DZA65_RS21510	0.82	+0.1
4,654,178	+		DZA65_RS21510	0.82	+0.0
4,654,178	+		DZA65_RS21510	0.82	+0.9
4,654,178	+		DZA65_RS21510	0.82	-0.7
4,654,179	-		DZA65_RS21510	0.82	-2.0
4,654,179	-		DZA65_RS21510	0.82	-1.2
4,654,179	-		DZA65_RS21510	0.82	-1.0
4,654,179	-		DZA65_RS21510	0.82	-1.6
4,654,179	-		DZA65_RS21510	0.82	-1.0
4,654,199	+		DZA65_RS21510	0.84	+0.3
4,654,199	+		DZA65_RS21510	0.84	+0.8
4,654,199	+		DZA65_RS21510	0.84	+0.1
4,654,199	+		DZA65_RS21510	0.84	-0.9
4,654,334	-				-1.9
4,654,344	+				-1.7
4,654,345	-				+0.1
4,654,382	-				+0.3
4,654,463	+				+0.3
4,654,463	+				+1.3
4,654,463	+				+0.1
4,654,463	+				-0.1
4,654,464	-				+0.1
4,654,464	-				+0.1
4,654,464	-				-1.6
4,654,465	+				-1.2
4,654,465	+				-2.0
4,654,465	+				+2.5
4,654,465	+				+3.0
4,654,465	+				+1.1
4,654,465	+				-0.4
4,654,466	-				+2.4
4,654,466	-				-0.2
4,654,466	-				-1.1
4,654,466	-				-0.2
4,654,466	-				-0.9
4,654,466	-				-1.4
4,654,466	-				+1.9
4,654,466	-				-1.6
4,654,466	-				-0.0
4,654,466	-				-0.0
4,654,499	+				-0.1
4,654,499	+				+1.5
4,654,499	+				+0.1
4,654,500	-				+0.1
4,654,500	-				-0.2
4,654,500	-				+0.1
4,654,500	-				+0.2
4,654,505	+				-0.2
4,654,505	+				+1.4
4,654,506	-				+1.3
4,654,512	+				-0.2
4,654,512	+				-0.4
4,654,512	+				-0.1
4,654,513	-				+0.5
4,654,513	-				+0.1
4,654,513	-				-1.4
4,654,513	-				-0.1
4,654,513	-				+0.3
4,654,513	-				+0.0
4,654,517	+				+0.9
4,654,517	+				+0.5
4,654,517	+				-0.2
4,654,518	-				-1.6
4,654,518	-				+1.7
4,654,518	-				+0.0
4,654,518	-				-0.4
4,654,535	+				-0.2
4,654,535	+				-2.2
4,654,535	+				+1.2
4,654,535	+				-0.9
4,654,535	+				+0.1
4,654,535	+				-0.3
4,654,535	+				-1.7
4,654,535	+				+0.7
4,654,536	-				+1.5
4,654,536	-				+0.1
4,654,536	-				-1.7
4,654,539	+				-0.9
4,654,539	+				+0.1
4,654,539	+				+1.3
4,654,539	+				-0.0
4,654,539	+				-0.3
4,654,539	+				-0.1
4,654,539	+				+2.0
4,654,539	+				-0.7
4,654,539	+				+0.1
4,654,540	-				+1.7
4,654,540	-				+0.7
4,654,540	-				+0.4
4,654,540	-				-0.3
4,654,540	-				+0.1
4,654,540	-				-1.4
4,654,540	-				-1.4
4,654,540	-				-1.0
4,654,540	-				-0.1
4,654,540	-				+2.7
4,654,540	-				-1.8
4,654,540	-				+0.3
4,654,540	-				+0.1
4,654,592	+		DZA65_RS21515	0.18	-1.9
4,654,592	+		DZA65_RS21515	0.18	+0.8
4,654,592	+		DZA65_RS21515	0.18	-1.9
4,654,592	+		DZA65_RS21515	0.18	-1.2
4,654,592	+		DZA65_RS21515	0.18	-0.4
4,654,593	-		DZA65_RS21515	0.18	-1.0
4,654,593	-		DZA65_RS21515	0.18	-0.9
4,654,593	-		DZA65_RS21515	0.18	-0.4
4,654,593	-		DZA65_RS21515	0.18	-0.1
4,654,593	-		DZA65_RS21515	0.18	+1.3
4,654,593	-		DZA65_RS21515	0.18	+0.1
4,654,783	-		DZA65_RS21515	0.57	-1.2
4,654,783	-		DZA65_RS21515	0.57	-0.9
4,654,802	-		DZA65_RS21515	0.61	+0.9
4,654,802	-		DZA65_RS21515	0.61	-0.6
4,654,938	+		DZA65_RS21515	0.89	+0.1
4,654,938	+		DZA65_RS21515	0.89	-0.9
4,654,938	+		DZA65_RS21515	0.89	+0.6
4,654,938	+		DZA65_RS21515	0.89	+1.4
4,654,938	+		DZA65_RS21515	0.89	-2.3
4,654,939	-		DZA65_RS21515	0.89	-0.9
4,654,939	-		DZA65_RS21515	0.89	-0.3
4,654,939	-		DZA65_RS21515	0.89	+2.1
4,654,939	-		DZA65_RS21515	0.89	+0.1
4,654,939	-		DZA65_RS21515	0.89	+2.8
4,654,990	-				-0.3
4,655,059	-				-0.1
4,655,077	+				-1.0
4,655,078	-				+1.0
4,655,108	+		DZA65_RS21520	0.21	+0.6
4,655,126	+		DZA65_RS21520	0.28	-0.4
4,655,126	+		DZA65_RS21520	0.28	+0.7
4,655,126	+		DZA65_RS21520	0.28	+0.6
4,655,127	-		DZA65_RS21520	0.29	+0.1
4,655,170	+		DZA65_RS21520	0.47	-1.9
4,655,170	+		DZA65_RS21520	0.47	-0.9
4,655,170	+				-0.9
4,655,194	+		DZA65_RS21520	0.56	-0.0
4,655,194	+		DZA65_RS21520	0.56	-1.3
4,655,194	+		DZA65_RS21520	0.56	-0.3
4,655,194	+		DZA65_RS21520	0.56	+0.8
4,655,194	+		DZA65_RS21520	0.56	-1.4
4,655,194	+		DZA65_RS21520	0.56	+0.9
4,655,194	+		DZA65_RS21520	0.56	+1.9
4,655,194	+		DZA65_RS21520	0.56	-0.7
4,655,194	+		DZA65_RS21520	0.56	-0.9
4,655,194	+		DZA65_RS21520	0.56	+0.7
4,655,194	+		DZA65_RS21520	0.56	+1.3
4,655,194	+		DZA65_RS21520	0.56	+1.1
4,655,194	+		DZA65_RS21520	0.56	+0.3
4,655,194	+		DZA65_RS21520	0.56	+2.1
4,655,194	+		DZA65_RS21520	0.56	+1.0
4,655,194	+		DZA65_RS21520	0.56	+1.3
4,655,194	+		DZA65_RS21520	0.56	-0.4
4,655,194	+		DZA65_RS21520	0.56	-0.4
4,655,194	+		DZA65_RS21520	0.56	+0.4
4,655,194	+		DZA65_RS21520	0.56	+2.7
4,655,194	+		DZA65_RS21520	0.56	+2.1
4,655,194	+		DZA65_RS21520	0.56	-1.2
4,655,194	+		DZA65_RS21520	0.56	-1.2
4,655,194	+		DZA65_RS21520	0.56	+0.9
4,655,195	-		DZA65_RS21520	0.57	-2.4
4,655,195	-		DZA65_RS21520	0.57	+1.6
4,655,195	-		DZA65_RS21520	0.57	+0.1
4,655,195	-		DZA65_RS21520	0.57	-1.2
4,655,195	-		DZA65_RS21520	0.57	+0.1
4,655,195	-		DZA65_RS21520	0.57	+0.7
4,655,195	-		DZA65_RS21520	0.57	+0.0
4,655,195	-		DZA65_RS21520	0.57	+0.5
4,655,195	-		DZA65_RS21520	0.57	+0.1
4,655,195	-		DZA65_RS21520	0.57	+0.3
4,655,195	-		DZA65_RS21520	0.57	+1.2
4,655,195	-		DZA65_RS21520	0.57	-1.8
4,655,195	-		DZA65_RS21520	0.57	-1.1
4,655,195	-		DZA65_RS21520	0.57	+0.7
4,655,195	-		DZA65_RS21520	0.57	+1.8
4,655,195	-		DZA65_RS21520	0.57	+0.1
4,655,195	-		DZA65_RS21520	0.57	-0.5
4,655,195	-		DZA65_RS21520	0.57	+2.5
4,655,299	+				-0.7
4,655,299	+				-0.1
4,655,299	+				+0.5
4,655,299	+				-0.4
4,655,299	+				+0.5
4,655,300	-				+0.9
4,655,300	-				-2.0
4,655,317	+				-0.3
4,655,329	+				+0.0
4,655,330	-				+0.5
4,655,349	+				+0.1
4,655,349	+				+0.6
4,655,349	+				-0.9
4,655,349	+				+0.3
4,655,349	+				-0.8
4,655,349	+				-0.7
4,655,349	+				+0.9
4,655,349	+				-0.6
4,655,350	-				+1.7
4,655,350	-				-0.2
4,655,350	-				-0.4
4,655,350	-				+0.1
4,655,350	-				-1.2
4,655,350	-				+0.6
4,655,350	-				+1.5
4,655,350	-				+0.9
4,655,350	-				+0.3
4,655,350	-				+0.3
4,655,350	-				+0.1
4,655,398	+				+0.4
4,655,399	-				-0.0
4,655,399	-				+1.1
4,655,406	+				+1.3
4,655,407	-				-0.3
4,655,407	-				+0.1
4,655,407	-				+1.0
4,655,409	+				-0.4
4,655,409	+				-0.1
4,655,409	+				+0.7
4,655,409	+				-1.2
4,655,409	+				+0.6
4,655,409	+				+1.3
4,655,409	+				+1.1
4,655,409	+				-2.0
4,655,409	+				-1.3
4,655,409	+				-0.3
4,655,409	+				+0.4
4,655,409	+				+0.7
4,655,409	+				+0.1
4,655,410	-				-0.1
4,655,410	-				+0.6
4,655,410	-				+0.8
4,655,410	-				-0.6
4,655,410	-				-1.9
4,655,410	-				-0.4
4,655,410	-				-0.7
4,655,467	-				-0.4
4,655,467	-				-0.3
4,655,467	-				+0.5
4,655,484	+				-0.4
4,655,484	+				-1.7
4,655,484	+				+1.4
4,655,484	+				-1.2
4,655,485	-				-0.4
4,655,485	-				+2.7
4,655,485	-				+1.6
4,655,485	-				-0.3
4,655,485	-				+0.3
4,655,488	+				+0.4
4,655,488	+				+3.9
4,655,488	+				-0.7
4,655,489	-				+1.5
4,655,522	-				+0.8
4,655,593	+				+0.5
4,655,603	+				+0.2
4,655,604	-				-1.9
4,655,618	+				+0.2
4,655,618	+				-0.2
4,655,618	+				-1.2
4,655,619	-				+1.5
4,655,680	-				+1.3
4,655,764	+				+0.4
4,655,764	+				-0.4
4,655,765	-				+2.5
4,655,765	-				+0.6
4,655,765	-				+0.1
4,655,827	+				-0.1
4,655,827	+				-0.7
4,655,827	+				+3.1
4,655,828	-				+0.1
4,655,828	-				+0.1
4,655,860	+				-0.2
4,655,860	+				-0.4
4,655,861	-				+0.7
4,655,861	-				-0.4
4,655,865	+				-0.3
4,655,865	+				+0.6
4,655,865	+				+0.1
4,655,865	+				+0.5
4,655,865	+				+1.6
4,655,865	+				-0.8
4,655,866	-				+0.1
4,655,866	-				-0.9
4,655,866	-				+1.1
4,655,884	+				+1.1
4,655,884	+				+0.2
4,655,885	-				+0.6
4,655,885	-				-0.9
4,655,885	-				-0.2
4,656,028	+		DZA65_RS21525	0.17	-1.4
4,656,028	+		DZA65_RS21525	0.17	+0.7
4,656,028	+		DZA65_RS21525	0.17	-1.2
4,656,028	+		DZA65_RS21525	0.17	-0.9
4,656,029	-		DZA65_RS21525	0.17	-0.4
4,656,029	-		DZA65_RS21525	0.17	+0.3
4,656,029	-		DZA65_RS21525	0.17	+0.1
4,656,059	+		DZA65_RS21525	0.21	+0.7
4,656,059	+		DZA65_RS21525	0.21	+1.7
4,656,059	+		DZA65_RS21525	0.21	-0.4
4,656,060	-		DZA65_RS21525	0.21	+0.4
4,656,060	-		DZA65_RS21525	0.21	+0.8
4,656,060	-		DZA65_RS21525	0.21	+1.1
4,656,060	-		DZA65_RS21525	0.21	-1.4
4,656,155	+		DZA65_RS21525	0.32	-1.0
4,656,155	+		DZA65_RS21525	0.32	+0.1
4,656,155	+		DZA65_RS21525	0.32	-0.4
4,656,155	+		DZA65_RS21525	0.32	+0.7
4,656,155	+		DZA65_RS21525	0.32	+0.8
4,656,155	+		DZA65_RS21525	0.32	-1.7
4,656,155	+		DZA65_RS21525	0.32	-0.9
4,656,155	+		DZA65_RS21525	0.32	-2.2
4,656,155	+		DZA65_RS21525	0.32	+2.5
4,656,155	+		DZA65_RS21525	0.32	-1.4
4,656,155	+		DZA65_RS21525	0.32	+0.1
4,656,155	+		DZA65_RS21525	0.32	-1.2
4,656,155	+		DZA65_RS21525	0.32	+0.1
4,656,155	+		DZA65_RS21525	0.32	+0.1
4,656,155	+		DZA65_RS21525	0.32	-0.7
4,656,155	+		DZA65_RS21525	0.32	+0.6
4,656,156	-		DZA65_RS21525	0.32	+0.1
4,656,156	-		DZA65_RS21525	0.32	+0.6
4,656,156	-		DZA65_RS21525	0.32	+0.1
4,656,156	-		DZA65_RS21525	0.32	+1.1
4,656,156	-		DZA65_RS21525	0.32	+2.1
4,656,156	-		DZA65_RS21525	0.32	+1.7
4,656,156	-		DZA65_RS21525	0.32	-1.9
4,656,156	-		DZA65_RS21525	0.32	+0.1
4,656,156	-		DZA65_RS21525	0.32	+0.3
4,656,156	-				+1.6
4,656,156	-		DZA65_RS21525	0.32	+3.5
4,656,156	-		DZA65_RS21525	0.32	+0.1
4,656,156	-		DZA65_RS21525	0.32	+0.6
4,656,156	-		DZA65_RS21525	0.32	+0.5
4,656,156	-		DZA65_RS21525	0.32	-0.4
4,656,156	-		DZA65_RS21525	0.32	+1.4
4,656,156	-		DZA65_RS21525	0.32	+1.1
4,656,156	-		DZA65_RS21525	0.32	-1.2
4,656,156	-		DZA65_RS21525	0.32	-0.4
4,656,156	-		DZA65_RS21525	0.32	+0.6
4,656,156	-		DZA65_RS21525	0.32	-1.7
4,656,156	-		DZA65_RS21525	0.32	+1.1
4,656,156	-		DZA65_RS21525	0.32	-0.9
4,656,157	+		DZA65_RS21525	0.32	-0.2
4,656,157	+		DZA65_RS21525	0.32	-0.9
4,656,157	+		DZA65_RS21525	0.32	-0.9
4,656,158	-		DZA65_RS21525	0.32	-0.8
4,656,158	-		DZA65_RS21525	0.32	+0.3
4,656,158	-		DZA65_RS21525	0.32	+0.1
4,656,158	-		DZA65_RS21525	0.32	+2.7
4,656,158	-		DZA65_RS21525	0.32	+0.1
4,656,203	+		DZA65_RS21525	0.38	-0.4
4,656,204	-		DZA65_RS21525	0.38	+0.3
4,656,212	+		DZA65_RS21525	0.39	+0.4
4,656,213	-		DZA65_RS21525	0.39	+2.3
4,656,213	-		DZA65_RS21525	0.39	+0.7
4,656,213	-		DZA65_RS21525	0.39	+0.6