Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21435 and DZA65_RS21440 are separated by 14 nucleotides DZA65_RS21440 and DZA65_RS21445 are separated by 207 nucleotides DZA65_RS21445 and DZA65_RS21450 are separated by 134 nucleotides
DZA65_RS21435: DZA65_RS21435 - YijD family membrane protein, at 4,635,898 to 4,636,272
_RS21435
DZA65_RS21440: DZA65_RS21440 - HTH-type transcriptional repressor FabR, at 4,636,287 to 4,636,925
_RS21440
DZA65_RS21445: DZA65_RS21445 - Si-specific NAD(P)(+) transhydrogenase, at 4,637,133 to 4,638,533
_RS21445
DZA65_RS21450: DZA65_RS21450 - DNA-binding transcriptional regulator OxyR, at 4,638,668 to 4,639,585
_RS21450
Position (kb) 4637
4638
4639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4636.176 kb on + strand, within DZA65_RS21435 at 4636.176 kb on + strand, within DZA65_RS21435 at 4636.258 kb on + strand at 4636.259 kb on - strand at 4636.259 kb on - strand at 4636.288 kb on + strand at 4636.336 kb on + strand at 4636.336 kb on + strand at 4636.337 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.407 kb on - strand, within DZA65_RS21440 at 4636.407 kb on - strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.441 kb on - strand, within DZA65_RS21440 at 4636.490 kb on + strand, within DZA65_RS21440 at 4636.491 kb on - strand, within DZA65_RS21440 at 4636.510 kb on + strand, within DZA65_RS21440 at 4636.510 kb on + strand, within DZA65_RS21440 at 4636.510 kb on + strand, within DZA65_RS21440 at 4636.511 kb on - strand, within DZA65_RS21440 at 4636.511 kb on - strand, within DZA65_RS21440 at 4636.511 kb on - strand, within DZA65_RS21440 at 4636.686 kb on - strand, within DZA65_RS21440 at 4636.686 kb on - strand, within DZA65_RS21440 at 4636.780 kb on + strand, within DZA65_RS21440 at 4636.781 kb on - strand, within DZA65_RS21440 at 4636.844 kb on + strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.857 kb on + strand, within DZA65_RS21440 at 4636.926 kb on + strand at 4636.927 kb on - strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.974 kb on + strand at 4636.974 kb on + strand at 4636.974 kb on + strand at 4636.974 kb on + strand at 4636.975 kb on - strand at 4636.975 kb on - strand at 4636.984 kb on + strand at 4636.984 kb on + strand at 4636.984 kb on + strand at 4636.984 kb on + strand at 4636.985 kb on - strand at 4636.985 kb on - strand at 4636.985 kb on - strand at 4636.995 kb on + strand at 4636.995 kb on + strand at 4636.995 kb on + strand at 4636.996 kb on - strand at 4636.996 kb on - strand at 4637.015 kb on + strand at 4637.015 kb on + strand at 4637.015 kb on + strand at 4637.016 kb on - strand at 4637.016 kb on - strand at 4637.018 kb on + strand at 4637.018 kb on + strand at 4637.018 kb on + strand at 4637.018 kb on + strand at 4637.084 kb on - strand at 4637.123 kb on + strand at 4637.134 kb on + strand at 4637.145 kb on + strand at 4637.145 kb on + strand at 4637.233 kb on + strand at 4637.244 kb on + strand at 4637.247 kb on + strand at 4637.248 kb on - strand at 4637.346 kb on + strand, within DZA65_RS21445 at 4637.347 kb on - strand, within DZA65_RS21445 at 4637.347 kb on - strand, within DZA65_RS21445 at 4637.347 kb on - strand, within DZA65_RS21445 at 4637.501 kb on + strand, within DZA65_RS21445 at 4637.583 kb on + strand, within DZA65_RS21445 at 4637.584 kb on - strand, within DZA65_RS21445 at 4637.622 kb on + strand, within DZA65_RS21445 at 4637.677 kb on - strand, within DZA65_RS21445 at 4637.805 kb on + strand, within DZA65_RS21445 at 4638.100 kb on - strand, within DZA65_RS21445 at 4638.168 kb on - strand, within DZA65_RS21445 at 4638.183 kb on + strand, within DZA65_RS21445 at 4638.183 kb on + strand, within DZA65_RS21445 at 4638.184 kb on - strand, within DZA65_RS21445 at 4638.184 kb on - strand, within DZA65_RS21445 at 4638.188 kb on + strand, within DZA65_RS21445 at 4638.438 kb on - strand at 4638.440 kb on + strand at 4638.440 kb on + strand at 4638.441 kb on - strand at 4638.441 kb on - strand at 4638.441 kb on - strand at 4638.567 kb on - strand at 4638.588 kb on + strand at 4638.588 kb on + strand at 4638.644 kb on + strand at 4638.648 kb on + strand at 4638.652 kb on + strand at 4638.669 kb on + strand at 4638.771 kb on + strand, within DZA65_RS21450 at 4638.772 kb on - strand, within DZA65_RS21450 at 4638.772 kb on - strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.808 kb on - strand, within DZA65_RS21450 at 4638.808 kb on - strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.874 kb on + strand, within DZA65_RS21450 at 4638.874 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.878 kb on - strand, within DZA65_RS21450 at 4638.878 kb on - strand, within DZA65_RS21450 at 4638.893 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.078 kb on - strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.241 kb on - strand, within DZA65_RS21450 at 4639.241 kb on - strand, within DZA65_RS21450 at 4639.275 kb on + strand, within DZA65_RS21450 at 4639.276 kb on - strand, within DZA65_RS21450 at 4639.276 kb on - strand, within DZA65_RS21450 at 4639.304 kb on - strand, within DZA65_RS21450
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,636,176 + DZA65_RS21435 0.74 +0.4 4,636,176 + DZA65_RS21435 0.74 +0.6 4,636,258 + -0.9 4,636,259 - -1.7 4,636,259 - +1.7 4,636,288 + -0.2 4,636,336 + +0.0 4,636,336 + -0.1 4,636,337 - -0.4 4,636,340 - -0.2 4,636,340 - -0.4 4,636,340 - -0.3 4,636,340 - +0.6 4,636,340 - -0.4 4,636,404 + DZA65_RS21440 0.18 +0.7 4,636,404 + DZA65_RS21440 0.18 +1.7 4,636,404 + DZA65_RS21440 0.18 +1.6 4,636,404 + DZA65_RS21440 0.18 +0.4 4,636,404 + DZA65_RS21440 0.18 +2.1 4,636,404 + DZA65_RS21440 0.18 +1.1 4,636,404 + DZA65_RS21440 0.18 -1.4 4,636,404 + DZA65_RS21440 0.18 +0.4 4,636,404 + DZA65_RS21440 0.18 -0.6 4,636,404 + DZA65_RS21440 0.18 -1.2 4,636,404 + DZA65_RS21440 0.18 +0.6 4,636,404 + DZA65_RS21440 0.18 +1.6 4,636,404 + DZA65_RS21440 0.18 +0.1 4,636,404 + DZA65_RS21440 0.18 +0.8 4,636,404 + DZA65_RS21440 0.18 +0.4 4,636,404 + DZA65_RS21440 0.18 -0.4 4,636,405 - DZA65_RS21440 0.18 +1.5 4,636,405 - DZA65_RS21440 0.18 +0.4 4,636,405 - DZA65_RS21440 0.18 -0.0 4,636,405 - DZA65_RS21440 0.18 -1.7 4,636,405 - DZA65_RS21440 0.18 -0.1 4,636,405 - DZA65_RS21440 0.18 +0.4 4,636,405 - DZA65_RS21440 0.18 -0.2 4,636,405 - DZA65_RS21440 0.18 -0.6 4,636,405 - DZA65_RS21440 0.18 -0.3 4,636,405 - DZA65_RS21440 0.18 -0.1 4,636,405 - DZA65_RS21440 0.18 -0.6 4,636,405 - +1.1 4,636,405 - DZA65_RS21440 0.18 -1.7 4,636,405 - DZA65_RS21440 0.18 -0.9 4,636,405 - DZA65_RS21440 0.18 -0.2 4,636,405 - DZA65_RS21440 0.18 -0.9 4,636,405 - DZA65_RS21440 0.18 +0.7 4,636,405 - DZA65_RS21440 0.18 -0.6 4,636,405 - DZA65_RS21440 0.18 +0.4 4,636,407 - DZA65_RS21440 0.19 +1.1 4,636,407 - DZA65_RS21440 0.19 -0.4 4,636,440 + DZA65_RS21440 0.24 -0.0 4,636,440 + DZA65_RS21440 0.24 +1.3 4,636,440 + DZA65_RS21440 0.24 +0.4 4,636,440 + DZA65_RS21440 0.24 +0.8 4,636,441 - DZA65_RS21440 0.24 -0.5 4,636,490 + DZA65_RS21440 0.32 -0.3 4,636,491 - DZA65_RS21440 0.32 -0.0 4,636,510 + DZA65_RS21440 0.35 -0.6 4,636,510 + DZA65_RS21440 0.35 +0.0 4,636,510 + DZA65_RS21440 0.35 -1.9 4,636,511 - DZA65_RS21440 0.35 +1.1 4,636,511 - DZA65_RS21440 0.35 +0.1 4,636,511 - DZA65_RS21440 0.35 -0.2 4,636,686 - DZA65_RS21440 0.62 -0.3 4,636,686 - DZA65_RS21440 0.62 +0.1 4,636,780 + DZA65_RS21440 0.77 +0.1 4,636,781 - DZA65_RS21440 0.77 -0.0 4,636,844 + DZA65_RS21440 0.87 +0.6 4,636,845 - DZA65_RS21440 0.87 +1.1 4,636,845 - DZA65_RS21440 0.87 -0.4 4,636,845 - DZA65_RS21440 0.87 -0.9 4,636,845 - DZA65_RS21440 0.87 +1.4 4,636,857 + DZA65_RS21440 0.89 -0.4 4,636,926 + +0.0 4,636,927 - -0.6 4,636,954 + -0.4 4,636,954 + -0.1 4,636,954 + +0.6 4,636,954 + +0.8 4,636,954 + +0.0 4,636,955 - +1.4 4,636,955 - -0.7 4,636,955 - +0.1 4,636,955 - +0.1 4,636,955 - +0.1 4,636,955 - -1.4 4,636,955 - -0.2 4,636,972 + +0.4 4,636,972 + -0.6 4,636,972 + +0.9 4,636,972 + +1.0 4,636,972 + -1.9 4,636,972 + -0.6 4,636,972 + -1.2 4,636,972 + -0.8 4,636,972 + +0.5 4,636,972 + +1.7 4,636,972 + +0.3 4,636,972 + +0.1 4,636,972 + +0.0 4,636,972 + +0.8 4,636,972 + +0.3 4,636,972 + -0.6 4,636,972 + -1.0 4,636,972 + +0.5 4,636,972 + -0.5 4,636,972 + -0.5 4,636,972 + -0.1 4,636,972 + +0.7 4,636,972 + -0.0 4,636,972 + +0.5 4,636,972 + +1.6 4,636,972 + -0.5 4,636,973 - +0.6 4,636,973 - +0.2 4,636,973 - -1.7 4,636,973 - +0.8 4,636,973 - -0.0 4,636,973 - +0.1 4,636,973 - -0.4 4,636,973 - -0.9 4,636,974 + +0.1 4,636,974 + -0.7 4,636,974 + -0.9 4,636,974 + +1.4 4,636,975 - -0.8 4,636,975 - +0.7 4,636,984 + +1.1 4,636,984 + +1.7 4,636,984 + +0.2 4,636,984 + -0.1 4,636,985 - -0.2 4,636,985 - -1.2 4,636,985 - +1.1 4,636,995 + +0.9 4,636,995 + -1.2 4,636,995 + -0.9 4,636,996 - -2.7 4,636,996 - +0.7 4,637,015 + -1.4 4,637,015 + +0.1 4,637,015 + -1.9 4,637,016 - -0.6 4,637,016 - -3.0 4,637,018 + +0.1 4,637,018 + +0.3 4,637,018 + -0.8 4,637,018 + -0.3 4,637,084 - +0.3 4,637,123 + -1.0 4,637,134 + -2.2 4,637,145 + -0.3 4,637,145 + -1.9 4,637,233 + +0.4 4,637,244 + -0.2 4,637,247 + -1.4 4,637,248 - -1.7 4,637,346 + DZA65_RS21445 0.15 +0.4 4,637,347 - DZA65_RS21445 0.15 +0.1 4,637,347 - DZA65_RS21445 0.15 +0.1 4,637,347 - DZA65_RS21445 0.15 -1.7 4,637,501 + DZA65_RS21445 0.26 -2.3 4,637,583 + DZA65_RS21445 0.32 -1.0 4,637,584 - DZA65_RS21445 0.32 +0.3 4,637,622 + DZA65_RS21445 0.35 -1.0 4,637,677 - DZA65_RS21445 0.39 -1.4 4,637,805 + DZA65_RS21445 0.48 -1.3 4,638,100 - DZA65_RS21445 0.69 -1.2 4,638,168 - DZA65_RS21445 0.74 -0.4 4,638,183 + DZA65_RS21445 0.75 +0.1 4,638,183 + DZA65_RS21445 0.75 +1.5 4,638,184 - DZA65_RS21445 0.75 -1.0 4,638,184 - DZA65_RS21445 0.75 -0.7 4,638,188 + DZA65_RS21445 0.75 +0.1 4,638,438 - -0.2 4,638,440 + -1.1 4,638,440 + +1.1 4,638,441 - -0.4 4,638,441 - -0.4 4,638,441 - -0.6 4,638,567 - +0.7 4,638,588 + +0.1 4,638,588 + +0.1 4,638,644 + +1.6 4,638,648 + -0.9 4,638,652 + +0.4 4,638,669 + +1.5 4,638,771 + DZA65_RS21450 0.11 -1.0 4,638,772 - DZA65_RS21450 0.11 +0.1 4,638,772 - DZA65_RS21450 0.11 -0.6 4,638,787 + DZA65_RS21450 0.13 -1.2 4,638,787 + DZA65_RS21450 0.13 +0.6 4,638,787 + DZA65_RS21450 0.13 +1.1 4,638,788 - DZA65_RS21450 0.13 +0.4 4,638,788 - DZA65_RS21450 0.13 -1.0 4,638,788 - DZA65_RS21450 0.13 -0.6 4,638,807 + DZA65_RS21450 0.15 -0.3 4,638,807 + DZA65_RS21450 0.15 -0.2 4,638,807 + DZA65_RS21450 0.15 +1.5 4,638,808 - DZA65_RS21450 0.15 -2.2 4,638,808 - DZA65_RS21450 0.15 -1.5 4,638,819 + DZA65_RS21450 0.16 +0.8 4,638,819 + DZA65_RS21450 0.16 -0.1 4,638,819 + DZA65_RS21450 0.16 +0.3 4,638,820 - DZA65_RS21450 0.17 +0.3 4,638,820 - DZA65_RS21450 0.17 -0.9 4,638,820 - DZA65_RS21450 0.17 -1.0 4,638,820 - DZA65_RS21450 0.17 -0.3 4,638,874 + DZA65_RS21450 0.22 +1.5 4,638,874 + DZA65_RS21450 0.22 +0.6 4,638,877 + DZA65_RS21450 0.23 +1.9 4,638,877 + DZA65_RS21450 0.23 +0.7 4,638,877 + DZA65_RS21450 0.23 +0.1 4,638,878 - DZA65_RS21450 0.23 +0.6 4,638,878 - DZA65_RS21450 0.23 +1.0 4,638,893 + DZA65_RS21450 0.25 -0.2 4,639,077 + DZA65_RS21450 0.45 +0.5 4,639,077 + DZA65_RS21450 0.45 +0.1 4,639,077 + DZA65_RS21450 0.45 -0.4 4,639,077 + DZA65_RS21450 0.45 -0.6 4,639,077 + DZA65_RS21450 0.45 +0.1 4,639,078 - DZA65_RS21450 0.45 +1.1 4,639,218 + DZA65_RS21450 0.60 -0.9 4,639,218 + DZA65_RS21450 0.60 -1.7 4,639,218 + DZA65_RS21450 0.60 -0.6 4,639,218 + DZA65_RS21450 0.60 +1.6 4,639,218 + DZA65_RS21450 0.60 -0.2 4,639,218 + DZA65_RS21450 0.60 -1.9 4,639,218 + DZA65_RS21450 0.60 +3.5 4,639,218 + DZA65_RS21450 0.60 +0.4 4,639,219 - DZA65_RS21450 0.60 +0.4 4,639,219 - DZA65_RS21450 0.60 -0.3 4,639,219 - DZA65_RS21450 0.60 +0.1 4,639,219 - DZA65_RS21450 0.60 -0.3 4,639,240 + DZA65_RS21450 0.62 +0.5 4,639,240 + DZA65_RS21450 0.62 -0.5 4,639,240 + DZA65_RS21450 0.62 -1.1 4,639,240 + DZA65_RS21450 0.62 -1.4 4,639,241 - DZA65_RS21450 0.62 -0.6 4,639,241 - DZA65_RS21450 0.62 -1.0 4,639,275 + DZA65_RS21450 0.66 -0.1 4,639,276 - DZA65_RS21450 0.66 +1.8 4,639,276 - DZA65_RS21450 0.66 +0.1 4,639,304 - DZA65_RS21450 0.69 -0.7
Or see this region's nucleotide sequence