Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21310

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,609,293	+		DZA65_RS21305	0.46	+1.1
4,609,293	+		DZA65_RS21305	0.46	-0.9
4,609,351	+		DZA65_RS21305	0.50	+0.3
4,609,351	+		DZA65_RS21305	0.50	-1.7
4,609,351	+		DZA65_RS21305	0.50	-0.9
4,609,352	-		DZA65_RS21305	0.50	-0.5
4,609,352	-		DZA65_RS21305	0.50	+0.1
4,609,368	+		DZA65_RS21305	0.51	-1.2
4,609,408	-		DZA65_RS21305	0.53	+0.2
4,609,413	+		DZA65_RS21305	0.54	-0.5
4,609,492	+		DZA65_RS21305	0.59	+1.1
4,609,492	+		DZA65_RS21305	0.59	-1.8
4,609,493	-		DZA65_RS21305	0.59	-0.9
4,609,629	+		DZA65_RS21305	0.68	+0.1
4,609,629	+		DZA65_RS21305	0.68	-0.7
4,609,646	+		DZA65_RS21305	0.69	-0.7
4,609,646	+		DZA65_RS21305	0.69	+1.7
4,609,646	+		DZA65_RS21305	0.69	+0.9
4,609,647	-		DZA65_RS21305	0.69	-0.0
4,609,647	-		DZA65_RS21305	0.69	-0.5
4,609,647	-		DZA65_RS21305	0.69	+0.5
4,609,647	-		DZA65_RS21305	0.69	-1.1
4,609,681	+		DZA65_RS21305	0.72	-0.3
4,609,682	-		DZA65_RS21305	0.72	+0.1
4,609,682	-		DZA65_RS21305	0.72	-0.2
4,609,749	-		DZA65_RS21305	0.76	-1.2
4,609,749	-		DZA65_RS21305	0.76	-2.5
4,609,799	+		DZA65_RS21305	0.79	-0.7
4,609,816	+		DZA65_RS21305	0.81	-1.6
4,609,817	-		DZA65_RS21305	0.81	-1.1
4,609,817	-		DZA65_RS21305	0.81	+0.5
4,609,949	-		DZA65_RS21305	0.89	-0.9
4,609,949	-		DZA65_RS21305	0.89	-0.5
4,609,966	+				-0.3
4,609,967	-				+1.1
4,610,012	+				-0.1
4,610,082	+				+0.1
4,610,082	+				+1.3
4,610,083	-				+0.0
4,610,083	-				-0.5
4,610,120	+				+0.1
4,610,120	+				-0.2
4,610,120	+				-0.0
4,610,120	+				-0.6
4,610,120	+				+0.7
4,610,120	+				-0.9
4,610,120	+				+0.9
4,610,120	+				-0.5
4,610,120	+				+1.1
4,610,120	+				-1.0
4,610,120	+				+0.5
4,610,120	+				-0.3
4,610,120	+				+0.3
4,610,120	+				-0.3
4,610,121	-				+0.4
4,610,121	-				+0.1
4,610,121	-				-0.6
4,610,121	-				+0.1
4,610,121	-				-0.6
4,610,121	-				-1.2
4,610,126	+				-0.7
4,610,126	+				+1.3
4,610,126	+				-1.1
4,610,126	+				-0.6
4,610,126	+				+2.7
4,610,127	-				-1.3
4,610,127	-				+2.9
4,610,127	-				+0.2
4,610,127	-				+0.5
4,610,129	+				+0.5
4,610,129	+				-0.5
4,610,129	+				-1.0
4,610,129	+				-2.0
4,610,129	+				+0.9
4,610,129	+				+0.7
4,610,130	-				+1.0
4,610,130	-				+0.1
4,610,130	-				+0.3
4,610,130	-				+0.9
4,610,136	-				-1.7
4,610,136	-				-0.8
4,610,144	+				+0.0
4,610,184	+				+1.4
4,610,185	-				-0.6
4,610,185	-				+0.8
4,610,185	-				-0.4
4,610,191	+				-0.8
4,610,191	+				+2.4
4,610,191	+				+0.3
4,610,191	+				+0.1
4,610,191	+				+0.4
4,610,192	-				-1.5
4,610,192	-				+1.3
4,610,192	-				-1.7
4,610,192	-				-0.7
4,610,192	-				-0.3
4,610,207	-				+0.3
4,610,215	+				-0.1
4,610,215	+				+2.1
4,610,240	+				-0.2
4,610,240	+				-0.4
4,610,240	+				-1.7
4,610,240	+				-0.2
4,610,240	+				+1.1
4,610,240	+				+0.6
4,610,240	+				+1.7
4,610,240	+				-0.3
4,610,241	-				-1.2
4,610,241	-				-0.3
4,610,241	-				+0.2
4,610,241	-				-0.7
4,610,260	+				+0.6
4,610,261	-				-0.1
4,610,261	-				-0.1
4,610,261	-				-3.6
4,610,261	-				-3.3
4,610,261	-				-0.3
4,610,261	-				-1.2
4,610,261	-				+0.3
4,610,261	-				-1.0
4,610,261	-				-0.4
4,610,261	-				-0.1
4,610,437	+		DZA65_RS21310	0.14	-0.5
4,610,437	+		DZA65_RS21310	0.14	+0.6
4,610,437	+		DZA65_RS21310	0.14	-0.6
4,610,437	+		DZA65_RS21310	0.14	-1.7
4,610,437	+		DZA65_RS21310	0.14	-0.5
4,610,437	+		DZA65_RS21310	0.14	-1.5
4,610,437	+		DZA65_RS21310	0.14	-0.3
4,610,437	+		DZA65_RS21310	0.14	-0.2
4,610,437	+		DZA65_RS21310	0.14	+1.1
4,610,437	+		DZA65_RS21310	0.14	-0.4
4,610,438	-		DZA65_RS21310	0.15	+1.4
4,610,438	-		DZA65_RS21310	0.15	+1.1
4,610,438	-		DZA65_RS21310	0.15	-0.9
4,610,438	-		DZA65_RS21310	0.15	-0.5
4,610,438	-		DZA65_RS21310	0.15	-1.2
4,610,438	-		DZA65_RS21310	0.15	-1.7
4,610,438	-		DZA65_RS21310	0.15	-0.4
4,610,482	+		DZA65_RS21310	0.18	+0.4
4,610,482	+		DZA65_RS21310	0.18	-1.6
4,610,483	-		DZA65_RS21310	0.18	-0.0
4,610,483	-		DZA65_RS21310	0.18	-1.5
4,610,483	-				-0.5
4,610,505	-		DZA65_RS21310	0.19	-0.1
4,610,505	-		DZA65_RS21310	0.19	-0.1
4,610,505	-		DZA65_RS21310	0.19	-1.8
4,610,539	+		DZA65_RS21310	0.21	-1.4
4,610,539	+		DZA65_RS21310	0.21	+1.5
4,610,539	+		DZA65_RS21310	0.21	+0.4
4,610,540	-		DZA65_RS21310	0.21	+1.1
4,610,540	-		DZA65_RS21310	0.21	-0.2
4,610,540	-		DZA65_RS21310	0.21	-1.0
4,610,540	-		DZA65_RS21310	0.21	-1.5
4,610,543	-		DZA65_RS21310	0.22	-1.1
4,610,543	-		DZA65_RS21310	0.22	-0.3
4,610,607	+		DZA65_RS21310	0.26	-1.0
4,610,607	+		DZA65_RS21310	0.26	-1.0
4,610,607	+		DZA65_RS21310	0.26	-2.0
4,610,608	-		DZA65_RS21310	0.26	-0.2
4,610,608	-		DZA65_RS21310	0.26	-0.5
4,610,641	+		DZA65_RS21310	0.28	+0.7
4,610,641	+		DZA65_RS21310	0.28	+0.8
4,610,642	-		DZA65_RS21310	0.28	-1.5
4,610,642	-		DZA65_RS21310	0.28	-1.3
4,610,642	-		DZA65_RS21310	0.28	+0.1
4,610,956	+		DZA65_RS21310	0.50	-0.6
4,610,956	+		DZA65_RS21310	0.50	-0.9
4,610,957	-		DZA65_RS21310	0.50	-2.0
4,610,957	-		DZA65_RS21310	0.50	-0.9
4,611,208	+		DZA65_RS21310	0.67	+0.7
4,611,208	+		DZA65_RS21310	0.67	-2.0
4,611,208	+		DZA65_RS21310	0.67	-1.9
4,611,208	+		DZA65_RS21310	0.67	-0.2
4,611,208	+		DZA65_RS21310	0.67	-1.2
4,611,208	+		DZA65_RS21310	0.67	-0.9
4,611,208	+		DZA65_RS21310	0.67	+1.1
4,611,209	-		DZA65_RS21310	0.67	+1.1
4,611,209	-		DZA65_RS21310	0.67	+0.3
4,611,209	-		DZA65_RS21310	0.67	-2.0
4,611,209	-		DZA65_RS21310	0.67	+0.5
4,611,255	+		DZA65_RS21310	0.70	-1.9
4,611,256	-		DZA65_RS21310	0.70	-0.5
4,611,256	-		DZA65_RS21310	0.70	-2.2
4,611,256	-		DZA65_RS21310	0.70	+0.1
4,611,256	-		DZA65_RS21310	0.70	-1.2
4,611,256	-		DZA65_RS21310	0.70	-1.5
4,611,269	+		DZA65_RS21310	0.71	+0.5
4,611,270	-		DZA65_RS21310	0.71	-0.7
4,611,349	-		DZA65_RS21310	0.76	-0.5
4,611,357	+		DZA65_RS21310	0.77	-1.5
4,611,358	-		DZA65_RS21310	0.77	+0.2
4,611,358	-		DZA65_RS21310	0.77	-0.2
4,611,358	-		DZA65_RS21310	0.77	+3.1
4,611,427	+		DZA65_RS21310	0.81	-1.7
4,611,427	+		DZA65_RS21310	0.81	-1.9
4,611,427	+		DZA65_RS21310	0.81	-0.3
4,611,427	+		DZA65_RS21310	0.81	-1.8
4,611,427	+		DZA65_RS21310	0.81	-0.7
4,611,427	+				+2.7
4,611,427	+		DZA65_RS21310	0.81	-0.4
4,611,427	+		DZA65_RS21310	0.81	-0.2
4,611,427	+		DZA65_RS21310	0.81	-2.7
4,611,427	+		DZA65_RS21310	0.81	-3.0
4,611,427	+		DZA65_RS21310	0.81	+3.1
4,611,427	+		DZA65_RS21310	0.81	-1.1
4,611,428	-		DZA65_RS21310	0.81	+0.1
4,611,428	-		DZA65_RS21310	0.81	-0.7
4,611,428	-		DZA65_RS21310	0.81	-1.2
4,611,428	-		DZA65_RS21310	0.81	+0.5
4,611,428	-		DZA65_RS21310	0.81	-1.2
4,611,428	-		DZA65_RS21310	0.81	-0.5
4,611,428	-		DZA65_RS21310	0.81	-0.6
4,611,428	-		DZA65_RS21310	0.81	-3.1
4,611,428	-		DZA65_RS21310	0.81	-0.9
4,611,428	-		DZA65_RS21310	0.81	-1.3
4,611,428	-		DZA65_RS21310	0.81	+0.1
4,611,428	-		DZA65_RS21310	0.81	-0.9
4,611,441	-		DZA65_RS21310	0.82	+0.1
4,611,441	-		DZA65_RS21310	0.82	+0.1
4,611,508	+		DZA65_RS21310	0.87	+0.5
4,611,573	+				+0.3
4,611,573	+				-1.7
4,611,574	-				-2.0
4,611,574	-				-0.0
4,611,601	+				-0.9
4,611,601	+				-1.2
4,611,602	-				-1.2
4,611,683	+				+0.3
4,611,683	+				+0.1
4,611,683	+				+1.1
4,611,683	+				-0.2
4,611,683	+				-0.7
4,611,683	+				+0.3
4,611,684	-				-0.9
4,611,684	-				-1.1
4,611,684	-				+1.5
4,611,684	-				-1.9
4,611,691	+				-0.6
4,611,691	+				-0.5
4,611,691	+				+0.5
4,611,691	+				+0.1
4,611,691	+				+1.1
4,611,692	-				+1.1
4,611,692	-				-1.9
4,611,692	-				-0.2
4,611,720	+				+0.1
4,611,721	-				+0.3
4,611,740	+				-1.2
4,611,740	+				+1.1
4,611,740	+				-1.2
4,611,741	-				-0.3
4,611,741	-				-0.7
4,611,741	-				-0.3
4,611,741	-				+1.4
4,611,781	+				+0.5
4,611,781	+				+0.5
4,611,781	+				-0.5
4,611,781	+				+0.4
4,611,781	+				-1.3
4,611,782	-				-1.3
4,611,786	+				-0.8
4,611,786	+				+0.2
4,611,786	+				+0.3
4,611,786	+				+0.1
4,611,786	+				-0.3
4,611,786	+				+1.4
4,611,786	+				-1.0
4,611,786	+				-2.0
4,611,786	+				+0.4
4,611,787	-				-0.7
4,611,787	-				-0.9
4,611,787	-				+0.1
4,611,787	-				+1.1
4,611,787	-				-1.6
4,611,798	+				+0.1
4,611,798	+				-0.9
4,611,799	-				-1.0
4,611,799	-				+0.3
4,611,799	-				-0.2
4,611,799	-				-2.2
4,611,817	+				-0.7
4,611,817	+				+0.1
4,611,817	+				-0.6
4,611,818	-				+0.6
4,611,818	-				+0.1
4,611,818	-				-0.8
4,611,820	+				-0.9
4,611,820	+				+0.7
4,611,820	+				-0.9
4,611,821	-				+0.5
4,611,821	-				-0.3
4,611,821	-				+0.3
4,611,821	-				+0.1
4,611,821	-				-0.5
4,611,851	+				+1.5
4,611,851	+				-0.3
4,611,852	-				-1.3
4,611,878	+				-2.7
4,611,879	-				-0.5
4,611,879	-				+0.8
4,611,879	-				-0.1
4,611,948	+				+0.5
4,611,948	+				+0.4
4,611,949	-				-0.7
4,611,949	-				-0.5
4,612,177	+		DZA65_RS21315	0.34	-1.0
4,612,177	+		DZA65_RS21315	0.34	-1.4
4,612,177	+		DZA65_RS21315	0.34	-0.9
4,612,177	+		DZA65_RS21315	0.34	-0.6
4,612,178	-		DZA65_RS21315	0.35	-0.5
4,612,178	-				+3.1
4,612,178	-		DZA65_RS21315	0.35	-0.2
4,612,178	-		DZA65_RS21315	0.35	-0.6
4,612,344	+		DZA65_RS21315	0.53	-0.3
4,612,344	+		DZA65_RS21315	0.53	+0.8
4,612,344	+		DZA65_RS21315	0.53	-1.5
4,612,345	-		DZA65_RS21315	0.53	-0.2
4,612,345	-		DZA65_RS21315	0.53	+0.1
4,612,345	-		DZA65_RS21315	0.53	-0.9
4,612,512	+		DZA65_RS21315	0.72	-0.5
4,612,512	+		DZA65_RS21315	0.72	-0.5
4,612,512	+		DZA65_RS21315	0.72	+0.1
4,612,512	+		DZA65_RS21315	0.72	-0.7
4,612,513	-		DZA65_RS21315	0.72	+0.1
4,612,528	+		DZA65_RS21315	0.74	-1.7
4,612,528	+		DZA65_RS21315	0.74	-1.2
4,612,529	-		DZA65_RS21315	0.74	-1.5
4,612,563	+		DZA65_RS21315	0.78	+1.8
4,612,563	+		DZA65_RS21315	0.78	-2.0
4,612,563	+		DZA65_RS21315	0.78	+0.3
4,612,563	+		DZA65_RS21315	0.78	-2.2
4,612,563	+		DZA65_RS21315	0.78	+1.1
4,612,564	-		DZA65_RS21315	0.78	+0.5
4,612,564	-		DZA65_RS21315	0.78	+0.5
4,612,565	-		DZA65_RS21315	0.78	-0.6
4,612,607	+		DZA65_RS21315	0.83	+0.6
4,612,607	+		DZA65_RS21315	0.83	+2.3
4,612,607	+		DZA65_RS21315	0.83	+0.7
4,612,607	+		DZA65_RS21315	0.83	-0.5
4,612,607	+		DZA65_RS21315	0.83	-0.3
4,612,607	+		DZA65_RS21315	0.83	+1.1
4,612,608	-		DZA65_RS21315	0.83	+1.1
4,612,608	-		DZA65_RS21315	0.83	+0.4
4,612,635	+		DZA65_RS21315	0.86	-0.4
4,612,635	+		DZA65_RS21315	0.86	+1.8
4,612,665	+		DZA65_RS21315	0.89	+0.5
4,612,665	+		DZA65_RS21315	0.89	-0.1
4,612,665	+		DZA65_RS21315	0.89	-0.0
4,612,666	-		DZA65_RS21315	0.90	-0.9
4,612,666	-		DZA65_RS21315	0.90	-2.3
4,612,666	-		DZA65_RS21315	0.90	+0.6