Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21230

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,585,044	-		DZA65_RS21225	0.32	+1.9
4,585,075	+		DZA65_RS21225	0.34	-0.9
4,585,076	-		DZA65_RS21225	0.34	+0.7
4,585,076	-		DZA65_RS21225	0.34	+1.9
4,585,162	+		DZA65_RS21225	0.41	+2.7
4,585,162	+		DZA65_RS21225	0.41	+0.5
4,585,162	+		DZA65_RS21225	0.41	-0.5
4,585,163	-		DZA65_RS21225	0.41	-1.2
4,585,163	-		DZA65_RS21225	0.41	-0.3
4,585,163	-		DZA65_RS21225	0.41	-0.3
4,585,163	-		DZA65_RS21225	0.41	+0.5
4,585,163	-		DZA65_RS21225	0.41	+0.1
4,585,163	-		DZA65_RS21225	0.41	-1.5
4,585,163	-		DZA65_RS21225	0.41	+0.5
4,585,196	-		DZA65_RS21225	0.44	-0.3
4,585,249	-		DZA65_RS21225	0.48	+0.4
4,585,300	-		DZA65_RS21225	0.52	+0.0
4,585,300	-		DZA65_RS21225	0.52	-1.0
4,585,369	-		DZA65_RS21225	0.58	-0.2
4,585,369	-		DZA65_RS21225	0.58	+0.1
4,585,384	+		DZA65_RS21225	0.59	-0.3
4,585,384	+		DZA65_RS21225	0.59	-0.2
4,585,384	+		DZA65_RS21225	0.59	-1.2
4,585,385	-		DZA65_RS21225	0.59	-1.2
4,585,385	-		DZA65_RS21225	0.59	-0.0
4,585,385	-		DZA65_RS21225	0.59	+1.4
4,585,556	-		DZA65_RS21225	0.73	-1.2
4,585,713	+		DZA65_RS21225	0.85	-1.7
4,585,771	+		DZA65_RS21225	0.90	-0.3
4,585,826	+				-0.1
4,585,826	+				-0.3
4,585,826	+				-1.3
4,585,959	+				-0.8
4,585,959	+				+0.3
4,585,959	+				+1.7
4,585,959	+				-2.9
4,585,959	+				+0.1
4,585,960	-				-0.5
4,585,960	-				-2.5
4,585,960	-				-0.9
4,585,960	-				+2.1
4,585,960	-				+1.1
4,586,065	+		DZA65_RS21230	0.15	+1.1
4,586,065	+		DZA65_RS21230	0.15	+0.6
4,586,065	+		DZA65_RS21230	0.15	-0.7
4,586,065	+		DZA65_RS21230	0.15	-0.5
4,586,066	-		DZA65_RS21230	0.15	+0.7
4,586,066	-				+2.1
4,586,066	-		DZA65_RS21230	0.15	-0.9
4,586,066	-		DZA65_RS21230	0.15	+0.1
4,586,066	-		DZA65_RS21230	0.15	+0.1
4,586,066	-		DZA65_RS21230	0.15	-3.1
4,586,066	-		DZA65_RS21230	0.15	+0.1
4,586,066	-		DZA65_RS21230	0.15	+0.0
4,586,066	-		DZA65_RS21230	0.15	+0.1
4,586,067	+		DZA65_RS21230	0.15	-1.2
4,586,067	+		DZA65_RS21230	0.15	-0.5
4,586,067	+		DZA65_RS21230	0.15	+0.4
4,586,067	+		DZA65_RS21230	0.15	-1.1
4,586,067	+		DZA65_RS21230	0.15	-0.1
4,586,068	-		DZA65_RS21230	0.15	-0.3
4,586,068	-		DZA65_RS21230	0.15	+0.1
4,586,068	-		DZA65_RS21230	0.15	-1.0
4,586,068	-		DZA65_RS21230	0.15	+0.1
4,586,068	-		DZA65_RS21230	0.15	-0.7
4,586,101	+		DZA65_RS21230	0.18	-0.7
4,586,102	-		DZA65_RS21230	0.18	+2.5
4,586,102	-		DZA65_RS21230	0.18	+0.8
4,586,238	+		DZA65_RS21230	0.30	-0.6
4,586,238	+		DZA65_RS21230	0.30	-1.2
4,586,238	+		DZA65_RS21230	0.30	+2.9
4,586,238	+		DZA65_RS21230	0.30	-1.2
4,586,239	-		DZA65_RS21230	0.30	+0.2
4,586,239	-		DZA65_RS21230	0.30	-0.8
4,586,239	-		DZA65_RS21230	0.30	+0.9
4,586,249	+		DZA65_RS21230	0.31	-2.0
4,586,249	+		DZA65_RS21230	0.31	+1.1
4,586,250	-		DZA65_RS21230	0.31	-0.6
4,586,304	+		DZA65_RS21230	0.36	+0.7
4,586,304	+		DZA65_RS21230	0.36	+0.3
4,586,305	-		DZA65_RS21230	0.36	-0.1
4,586,305	-		DZA65_RS21230	0.36	+1.5
4,586,331	+		DZA65_RS21230	0.38	+0.0
4,586,331	+		DZA65_RS21230	0.38	-1.0
4,586,332	-		DZA65_RS21230	0.38	-0.6
4,586,332	-		DZA65_RS21230	0.38	-1.2
4,586,332	-		DZA65_RS21230	0.38	-0.9
4,586,332	-		DZA65_RS21230	0.38	-1.9
4,586,332	-		DZA65_RS21230	0.38	-0.9
4,586,358	+		DZA65_RS21230	0.41	-0.1
4,586,358	+		DZA65_RS21230	0.41	-1.1
4,586,358	+		DZA65_RS21230	0.41	-0.5
4,586,358	+		DZA65_RS21230	0.41	+0.3
4,586,358	+		DZA65_RS21230	0.41	-1.0
4,586,358	+		DZA65_RS21230	0.41	-0.5
4,586,358	+		DZA65_RS21230	0.41	-1.5
4,586,358	+		DZA65_RS21230	0.41	+1.9
4,586,358	+		DZA65_RS21230	0.41	+0.0
4,586,358	+		DZA65_RS21230	0.41	+0.5
4,586,358	+		DZA65_RS21230	0.41	-2.3
4,586,359	-		DZA65_RS21230	0.41	+1.1
4,586,359	-		DZA65_RS21230	0.41	-0.4
4,586,359	-		DZA65_RS21230	0.41	-0.2
4,586,359	-		DZA65_RS21230	0.41	+0.9
4,586,359	-		DZA65_RS21230	0.41	-0.7
4,586,359	-		DZA65_RS21230	0.41	-1.7
4,586,359	-		DZA65_RS21230	0.41	-0.9
4,586,362	+		DZA65_RS21230	0.41	+0.1
4,586,414	-		DZA65_RS21230	0.46	-0.5
4,586,455	+		DZA65_RS21230	0.49	+1.5
4,586,481	+		DZA65_RS21230	0.52	+1.2
4,586,481	+		DZA65_RS21230	0.52	-0.9
4,586,481	+		DZA65_RS21230	0.52	+1.5
4,586,482	-		DZA65_RS21230	0.52	-0.9
4,586,482	-		DZA65_RS21230	0.52	-0.5
4,586,482	-		DZA65_RS21230	0.52	-0.1
4,586,482	-		DZA65_RS21230	0.52	-1.9
4,586,548	-		DZA65_RS21230	0.57	-0.2
4,586,595	+		DZA65_RS21230	0.62	-0.5
4,586,647	-		DZA65_RS21230	0.66	-2.3
4,586,680	+		DZA65_RS21230	0.69	+0.5
4,586,680	+		DZA65_RS21230	0.69	+0.2
4,586,680	+		DZA65_RS21230	0.69	-0.3
4,586,681	-		DZA65_RS21230	0.69	+0.1
4,586,681	-		DZA65_RS21230	0.69	-0.2
4,586,681	-		DZA65_RS21230	0.69	+0.5
4,586,681	-		DZA65_RS21230	0.69	+0.2
4,586,681	-		DZA65_RS21230	0.69	-1.9
4,586,749	+		DZA65_RS21230	0.75	+0.5
4,586,750	-		DZA65_RS21230	0.75	+1.0
4,586,750	-		DZA65_RS21230	0.75	-0.7
4,586,793	+		DZA65_RS21230	0.79	-1.2
4,586,793	+		DZA65_RS21230	0.79	+0.5
4,586,793	+		DZA65_RS21230	0.79	-0.3
4,586,793	+		DZA65_RS21230	0.79	-0.5
4,586,793	+		DZA65_RS21230	0.79	+0.2
4,586,793	+		DZA65_RS21230	0.79	-0.1
4,586,793	+		DZA65_RS21230	0.79	-0.7
4,586,794	-		DZA65_RS21230	0.79	+1.4
4,586,794	-		DZA65_RS21230	0.79	-0.2
4,586,794	-		DZA65_RS21230	0.79	+0.4
4,586,794	-		DZA65_RS21230	0.79	+0.3
4,586,794	-		DZA65_RS21230	0.79	+0.5
4,586,837	+		DZA65_RS21230	0.83	-1.1
4,586,838	-		DZA65_RS21230	0.83	-0.2
4,586,882	+		DZA65_RS21230	0.87	+0.6
4,586,882	+		DZA65_RS21230	0.87	+0.7
4,586,882	+		DZA65_RS21230	0.87	+0.9
4,586,882	+		DZA65_RS21230	0.87	-1.2
4,586,882	+		DZA65_RS21230	0.87	-0.8
4,586,883	-		DZA65_RS21230	0.87	-0.7
4,586,883	-		DZA65_RS21230	0.87	-1.0
4,586,883	-		DZA65_RS21230	0.87	+0.1
4,586,883	-		DZA65_RS21230	0.87	-0.1
4,586,883	-		DZA65_RS21230	0.87	+0.5
4,586,901	+		DZA65_RS21230	0.89	-0.8
4,586,901	+		DZA65_RS21230	0.89	-0.8
4,586,902	-		DZA65_RS21230	0.89	-0.2
4,586,980	+				+0.5
4,586,980	+				+0.5
4,586,980	+				-1.0
4,586,980	+				-0.3
4,586,980	+				-2.3
4,586,980	+				+0.9
4,586,980	+				+0.4
4,586,980	+				+0.8
4,586,980	+				+0.1
4,586,980	+				+0.5
4,586,980	+				+0.3
4,586,980	+				-0.5
4,586,980	+				-0.1
4,586,981	-				-0.6
4,586,981	-				-0.2
4,586,981	-				-1.7
4,586,981	-				-1.9
4,586,981	-				-1.2
4,586,981	-				+0.8
4,586,981	-				-0.0
4,586,981	-				-1.5
4,586,981	-				-1.0
4,586,981	-				+0.4
4,586,982	+				-0.7
4,586,982	+				-0.4
4,586,982	+				+0.3
4,586,982	+				-0.2
4,586,982	+				+0.6
4,586,982	+				+0.2
4,586,982	+				+0.4
4,586,982	+				-2.2
4,586,982	+				+1.4
4,586,982	+				-0.9
4,586,982	+				+1.1
4,586,982	+				-0.2
4,586,983	-				+0.3
4,586,983	-				-0.9
4,586,983	-				+0.2
4,586,983	-				+0.1
4,586,983	-				-1.5
4,586,983	-				-1.5
4,586,983	-				-1.3
4,586,983	-				-0.3
4,586,983	-				-0.7
4,586,983	-				+0.7
4,586,983	-				+0.1
4,586,983	-				-3.0
4,586,983	-				-1.2
4,586,983	-				+0.2
4,586,983	-				+0.7
4,586,983	-				-0.0
4,586,983	-				-0.3
4,586,983	-				-0.7
4,586,983	-				+0.8
4,587,016	+				+2.1
4,587,017	-				-0.0
4,587,017	-				+0.7
4,587,071	-				+0.0
4,587,079	+				+0.2
4,587,115	+				-0.4
4,587,115	+				-1.9
4,587,116	-				-0.2
4,587,116	-				-0.1
4,587,116	-				-1.3
4,587,116	-				-0.1
4,587,123	+				+0.3
4,587,123	+				-0.5
4,587,124	-				-1.5
4,587,388	+		DZA65_RS21235	0.46	-0.7
4,587,388	+		DZA65_RS21235	0.46	-0.9
4,587,639	+		DZA65_RS21235	0.82	-1.9
4,587,639	+		DZA65_RS21235	0.82	-1.3
4,587,639	+		DZA65_RS21235	0.82	+0.6
4,587,640	-		DZA65_RS21235	0.82	-0.1
4,587,640	-		DZA65_RS21235	0.82	+0.7
4,587,640	-		DZA65_RS21235	0.82	-0.7
4,587,640	-		DZA65_RS21235	0.82	+0.1
4,587,640	-		DZA65_RS21235	0.82	-0.9
4,587,640	-		DZA65_RS21235	0.82	-0.2
4,587,640	-		DZA65_RS21235	0.82	+1.7
4,587,640	-		DZA65_RS21235	0.82	-0.5
4,587,640	-		DZA65_RS21235	0.82	-0.6
4,587,640	-		DZA65_RS21235	0.82	-1.0
4,587,640	-		DZA65_RS21235	0.82	+0.6
4,587,640	-		DZA65_RS21235	0.82	+0.1
4,587,646	+		DZA65_RS21235	0.83	-1.2
4,587,646	+		DZA65_RS21235	0.83	+0.1
4,587,647	-		DZA65_RS21235	0.83	-0.5
4,587,710	+				-0.7
4,587,710	+				-0.1
4,587,710	+				-2.3
4,587,711	-				+0.4
4,587,711	-				-0.5
4,587,711	-				+0.5
4,587,711	-				+0.3
4,587,767	+				-1.4
4,587,767	+				+1.1
4,587,767	+				+1.7
4,587,767	+				+1.1
4,587,767	+				-1.0
4,587,767	+				+0.9
4,587,767	+				+0.3
4,587,767	+				-0.1
4,587,767	+				-1.0
4,587,767	+				-1.5
4,587,767	+				-0.8
4,587,768	-				+0.8
4,587,768	-				+1.7
4,587,768	-				+0.5
4,587,768	-				+0.4
4,587,768	-				+0.4
4,587,768	-				+0.4
4,587,768	-				-1.9
4,587,768	-				-0.8
4,587,768	-				+0.1
4,587,768	-				+0.9
4,587,768	-				+1.1
4,587,768	-				+0.0
4,587,768	-				-0.4
4,587,768	-				+0.1
4,587,768	-				+2.1
4,587,768	-				+1.1
4,587,768	-				-0.6
4,587,768	-				-1.8
4,587,768	-				-1.0
4,587,768	-				+1.1
4,587,768	-				-1.3
4,587,988	+		DZA65_RS21240	0.14	-2.1
4,587,988	+		DZA65_RS21240	0.14	-0.7
4,587,989	-		DZA65_RS21240	0.14	+0.8
4,587,989	-		DZA65_RS21240	0.14	-2.0
4,587,989	-		DZA65_RS21240	0.14	-0.2