Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20685

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,461,539	+				+0.1
4,461,547	-				+0.4
4,461,555	+				-1.4
4,461,588	+				+0.1
4,461,601	+				-0.9
4,461,602	-				-0.7
4,461,681	+				+0.7
4,461,730	+				+1.7
4,461,730	+				-0.5
4,461,730	+				-0.5
4,461,730	+				-1.2
4,461,730	+				-0.5
4,461,730	+				+1.1
4,461,730	+				+0.5
4,461,731	-				+1.1
4,461,731	-				-0.5
4,461,731	-				-0.7
4,461,737	+				+0.1
4,461,737	+				+1.5
4,461,738	-				-0.1
4,461,768	-		DZA65_RS20680	0.11	-1.3
4,461,779	+		DZA65_RS20680	0.13	-1.3
4,461,779	+		DZA65_RS20680	0.13	-0.5
4,461,780	-		DZA65_RS20680	0.13	-1.9
4,461,780	-		DZA65_RS20680	0.13	-1.5
4,461,812	+		DZA65_RS20680	0.18	-0.5
4,461,812	+		DZA65_RS20680	0.18	-0.6
4,461,812	+		DZA65_RS20680	0.18	-0.9
4,461,812	+		DZA65_RS20680	0.18	+0.1
4,461,812	+		DZA65_RS20680	0.18	-2.1
4,461,813	-		DZA65_RS20680	0.18	+0.9
4,461,813	-		DZA65_RS20680	0.18	-0.9
4,461,931	+		DZA65_RS20680	0.37	+1.5
4,461,931	+		DZA65_RS20680	0.37	-0.3
4,461,932	-		DZA65_RS20680	0.37	+0.6
4,461,932	-		DZA65_RS20680	0.37	-0.8
4,462,025	-		DZA65_RS20680	0.52	-1.2
4,462,025	-		DZA65_RS20680	0.52	-0.9
4,462,031	+		DZA65_RS20680	0.53	-0.4
4,462,031	+		DZA65_RS20680	0.53	-0.9
4,462,031	+		DZA65_RS20680	0.53	+0.2
4,462,031	+		DZA65_RS20680	0.53	+0.3
4,462,031	+		DZA65_RS20680	0.53	+0.5
4,462,032	-		DZA65_RS20680	0.53	-1.6
4,462,032	-		DZA65_RS20680	0.53	-0.5
4,462,126	+		DZA65_RS20680	0.68	+0.5
4,462,126	+		DZA65_RS20680	0.68	-1.2
4,462,127	-		DZA65_RS20680	0.68	-1.6
4,462,127	-		DZA65_RS20680	0.68	-2.2
4,462,160	+		DZA65_RS20680	0.74	-0.4
4,462,161	-		DZA65_RS20680	0.74	+0.5
4,462,161	-		DZA65_RS20680	0.74	-0.9
4,462,161	-		DZA65_RS20680	0.74	+1.5
4,462,288	-				+0.5
4,462,344	-				-2.2
4,462,344	-				+1.8
4,462,412	+				+1.5
4,462,412	+				+0.4
4,462,412	+				-0.5
4,462,412	+				-2.5
4,462,412	+				-1.1
4,462,412	+				-0.3
4,462,541	-				+0.4
4,462,541	-				+0.1
4,462,582	+				+0.1
4,462,641	-				-0.5
4,462,705	+		DZA65_RS20685	0.15	-0.5
4,462,705	+		DZA65_RS20685	0.15	-0.4
4,462,705	+		DZA65_RS20685	0.15	+0.3
4,462,706	-		DZA65_RS20685	0.15	-0.7
4,462,706	-		DZA65_RS20685	0.15	+2.0
4,462,706	-		DZA65_RS20685	0.15	+0.1
4,462,706	-		DZA65_RS20685	0.15	+1.4
4,462,706	-		DZA65_RS20685	0.15	-1.2
4,462,706	-		DZA65_RS20685	0.15	-0.2
4,462,706	-		DZA65_RS20685	0.15	+0.2
4,462,706	-		DZA65_RS20685	0.15	+0.3
4,462,706	-		DZA65_RS20685	0.15	-0.2
4,462,706	-		DZA65_RS20685	0.15	-0.6
4,462,706	-		DZA65_RS20685	0.15	-0.5
4,462,775	-		DZA65_RS20685	0.21	+0.6
4,462,775	-		DZA65_RS20685	0.21	-0.4
4,462,788	-		DZA65_RS20685	0.22	+0.3
4,462,804	+		DZA65_RS20685	0.23	+0.2
4,462,804	+		DZA65_RS20685	0.23	+1.2
4,462,804	+		DZA65_RS20685	0.23	-1.5
4,462,804	+		DZA65_RS20685	0.23	-1.7
4,462,804	+		DZA65_RS20685	0.23	-0.4
4,462,804	+		DZA65_RS20685	0.23	+1.5
4,462,805	-		DZA65_RS20685	0.23	+0.4
4,462,805	-		DZA65_RS20685	0.23	+1.1
4,462,805	-		DZA65_RS20685	0.23	+1.4
4,462,805	-		DZA65_RS20685	0.23	+0.4
4,462,805	-		DZA65_RS20685	0.23	-0.3
4,462,805	-		DZA65_RS20685	0.23	-0.3
4,462,837	+		DZA65_RS20685	0.26	-0.0
4,462,838	-		DZA65_RS20685	0.26	-0.1
4,463,020	+		DZA65_RS20685	0.42	+0.2
4,463,020	+		DZA65_RS20685	0.42	+1.1
4,463,021	-		DZA65_RS20685	0.42	-1.2
4,463,021	-		DZA65_RS20685	0.42	+1.3
4,463,021	-		DZA65_RS20685	0.42	+0.7
4,463,423	+		DZA65_RS20685	0.77	-1.2
4,463,448	+		DZA65_RS20685	0.80	+0.1
4,463,448	+		DZA65_RS20685	0.80	+1.8
4,463,448	+		DZA65_RS20685	0.80	+0.8
4,463,448	+		DZA65_RS20685	0.80	-0.1
4,463,608	+				-1.3
4,463,608	+				-2.1
4,463,608	+				+0.2
4,463,608	+				-0.3
4,463,608	+				+2.7
4,463,608	+				-1.5
4,463,609	-				-2.3
4,463,609	-				+0.6
4,463,609	-				-0.2
4,463,609	-				+0.4
4,463,609	-				+0.1
4,463,609	-				+2.1
4,463,609	-				-0.2
4,463,668	-				+1.7
4,463,681	+				+2.1
4,463,694	+				-0.8
4,463,698	+				-1.5
4,463,698	+				-2.2
4,463,699	-				-1.0
4,463,699	-				+1.0
4,463,699	-				+1.7
4,463,699	-				-0.3
4,463,895	-		DZA65_RS20690	0.17	-1.7
4,463,895	-		DZA65_RS20690	0.17	-0.6
4,463,895	-		DZA65_RS20690	0.17	-0.2
4,463,895	-		DZA65_RS20690	0.17	-0.2
4,463,895	-		DZA65_RS20690	0.17	-1.5
4,463,903	-		DZA65_RS20690	0.17	-1.2
4,464,136	-		DZA65_RS20690	0.36	+0.8
4,464,195	+		DZA65_RS20690	0.40	-3.3
4,464,195	+		DZA65_RS20690	0.40	+1.1
4,464,195	+		DZA65_RS20690	0.40	-0.1
4,464,195	+		DZA65_RS20690	0.40	+0.3
4,464,195	+		DZA65_RS20690	0.40	+0.4
4,464,195	+		DZA65_RS20690	0.40	+2.1
4,464,195	+		DZA65_RS20690	0.40	+0.3
4,464,196	-		DZA65_RS20690	0.40	+0.7
4,464,196	-		DZA65_RS20690	0.40	+0.8
4,464,196	-		DZA65_RS20690	0.40	+0.4
4,464,196	-		DZA65_RS20690	0.40	-0.6
4,464,196	-		DZA65_RS20690	0.40	+0.9
4,464,196	-		DZA65_RS20690	0.40	+0.4
4,464,196	-		DZA65_RS20690	0.40	+3.1
4,464,196	-		DZA65_RS20690	0.40	-0.9
4,464,196	-		DZA65_RS20690	0.40	+0.5
4,464,196	-		DZA65_RS20690	0.40	+0.1
4,464,196	-		DZA65_RS20690	0.40	-1.5
4,464,196	-		DZA65_RS20690	0.40	-0.1
4,464,196	-		DZA65_RS20690	0.40	-0.8
4,464,196	-		DZA65_RS20690	0.40	-1.2
4,464,243	+		DZA65_RS20690	0.44	-1.7
4,464,243	+		DZA65_RS20690	0.44	+0.8
4,464,243	+		DZA65_RS20690	0.44	+2.1
4,464,243	+		DZA65_RS20690	0.44	+2.2
4,464,244	-		DZA65_RS20690	0.44	-0.5
4,464,244	-		DZA65_RS20690	0.44	-0.1
4,464,244	-		DZA65_RS20690	0.44	-0.9
4,464,244	-		DZA65_RS20690	0.44	-1.5
4,464,269	+		DZA65_RS20690	0.46	-0.5
4,464,269	+		DZA65_RS20690	0.46	+0.1
4,464,269	+		DZA65_RS20690	0.46	-0.1
4,464,269	+		DZA65_RS20690	0.46	+0.0
4,464,270	-		DZA65_RS20690	0.46	-0.6
4,464,270	-		DZA65_RS20690	0.46	+0.4
4,464,362	+		DZA65_RS20690	0.53	+1.1
4,464,362	+		DZA65_RS20690	0.53	+0.2
4,464,362	+		DZA65_RS20690	0.53	+0.4
4,464,363	-		DZA65_RS20690	0.53	+0.8
4,464,363	-		DZA65_RS20690	0.53	-0.0
4,464,363	-		DZA65_RS20690	0.53	-1.1
4,464,402	-		DZA65_RS20690	0.56	-1.3
4,464,422	+		DZA65_RS20690	0.58	+0.8
4,464,422	+		DZA65_RS20690	0.58	+0.8
4,464,423	-		DZA65_RS20690	0.58	-0.4
4,464,450	+		DZA65_RS20690	0.60	-0.7
4,464,450	+				-0.5
4,464,520	+		DZA65_RS20690	0.65	-0.3
4,464,520	+		DZA65_RS20690	0.65	-1.4
4,464,520	+		DZA65_RS20690	0.65	-1.2
4,464,521	-		DZA65_RS20690	0.65	-0.0
4,464,521	-		DZA65_RS20690	0.65	-0.7
4,464,521	-		DZA65_RS20690	0.65	-0.6
4,464,521	-		DZA65_RS20690	0.65	+0.5
4,464,564	+		DZA65_RS20690	0.69	-1.2
4,464,564	+		DZA65_RS20690	0.69	-0.1
4,464,564	+		DZA65_RS20690	0.69	+0.1
4,464,564	+		DZA65_RS20690	0.69	-0.9
4,464,564	+		DZA65_RS20690	0.69	-0.2
4,464,564	+		DZA65_RS20690	0.69	-0.1
4,464,564	+		DZA65_RS20690	0.69	+1.5
4,464,564	+		DZA65_RS20690	0.69	+1.8
4,464,564	+		DZA65_RS20690	0.69	-1.9
4,464,565	-		DZA65_RS20690	0.69	+1.7
4,464,565	-		DZA65_RS20690	0.69	+0.1
4,464,565	-		DZA65_RS20690	0.69	-0.9
4,464,565	-		DZA65_RS20690	0.69	-2.1
4,464,565	-		DZA65_RS20690	0.69	-1.5
4,464,565	-		DZA65_RS20690	0.69	+0.6
4,464,565	-		DZA65_RS20690	0.69	+0.4
4,464,565	-		DZA65_RS20690	0.69	+0.6
4,464,673	+		DZA65_RS20690	0.77	-0.5
4,464,673	+		DZA65_RS20690	0.77	-0.0
4,464,673	+		DZA65_RS20690	0.77	-0.7
4,464,675	+		DZA65_RS20690	0.77	+0.1
4,464,675	+		DZA65_RS20690	0.77	+0.1
4,464,675	+		DZA65_RS20690	0.77	-0.5
4,464,675	+		DZA65_RS20690	0.77	-0.1
4,464,675	+		DZA65_RS20690	0.77	-1.4
4,464,675	+		DZA65_RS20690	0.77	-1.5
4,464,675	+		DZA65_RS20690	0.77	+0.5
4,464,675	+		DZA65_RS20690	0.77	+0.5
4,464,675	+		DZA65_RS20690	0.77	+0.6
4,464,675	+		DZA65_RS20690	0.77	+0.6
4,464,675	+		DZA65_RS20690	0.77	+0.3
4,464,675	+		DZA65_RS20690	0.77	-1.9
4,464,675	+		DZA65_RS20690	0.77	+0.4
4,464,675	+		DZA65_RS20690	0.77	+0.7
4,464,675	+		DZA65_RS20690	0.77	+1.6
4,464,675	+		DZA65_RS20690	0.77	-1.2
4,464,675	+		DZA65_RS20690	0.77	+0.1
4,464,676	-		DZA65_RS20690	0.77	+2.9
4,464,676	-		DZA65_RS20690	0.77	-0.2
4,464,676	-		DZA65_RS20690	0.77	+1.0
4,464,676	-		DZA65_RS20690	0.77	+1.3
4,464,676	-		DZA65_RS20690	0.77	+0.5
4,464,676	-		DZA65_RS20690	0.77	+1.7
4,464,676	-		DZA65_RS20690	0.77	-0.9
4,464,676	-		DZA65_RS20690	0.77	-0.5
4,464,676	-		DZA65_RS20690	0.77	-0.6
4,464,676	-		DZA65_RS20690	0.77	+1.4
4,464,676	-		DZA65_RS20690	0.77	+0.5
4,464,676	-		DZA65_RS20690	0.77	-1.2
4,464,676	-		DZA65_RS20690	0.77	+0.3
4,464,676	-		DZA65_RS20690	0.77	-0.5
4,464,676	-		DZA65_RS20690	0.77	-0.9
4,464,676	-		DZA65_RS20690	0.77	-1.9
4,464,676	-		DZA65_RS20690	0.77	+1.2
4,464,676	-		DZA65_RS20690	0.77	-0.1
4,464,676	-		DZA65_RS20690	0.77	+0.2
4,464,676	-		DZA65_RS20690	0.77	-0.0
4,464,676	-		DZA65_RS20690	0.77	+0.5
4,464,681	+		DZA65_RS20690	0.78	-0.0
4,464,681	+		DZA65_RS20690	0.78	+0.2
4,464,681	+		DZA65_RS20690	0.78	+0.6
4,464,681	+		DZA65_RS20690	0.78	-0.7