Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19965 and DZA65_RS19970 are separated by 31 nucleotides DZA65_RS19970 and DZA65_RS19975 are separated by 459 nucleotides DZA65_RS19975 and DZA65_RS19980 overlap by 14 nucleotides
DZA65_RS19965: DZA65_RS19965 - cysteine desulfurase NifS, at 4,319,044 to 4,320,306
_RS19965
DZA65_RS19970: DZA65_RS19970 - Fe-S cluster assembly protein NifU, at 4,320,338 to 4,321,183
_RS19970
DZA65_RS19975: DZA65_RS19975 - nitrogen fixation protein NifX, at 4,321,643 to 4,322,110
_RS19975
DZA65_RS19980: DZA65_RS19980 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 4,322,097 to 4,323,482
_RS19980
Position (kb) 4320
4321
4322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4319.361 kb on + strand, within DZA65_RS19965 at 4319.362 kb on - strand, within DZA65_RS19965 at 4319.362 kb on - strand, within DZA65_RS19965 at 4319.370 kb on + strand, within DZA65_RS19965 at 4319.370 kb on + strand, within DZA65_RS19965 at 4319.371 kb on - strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.489 kb on - strand, within DZA65_RS19965 at 4319.489 kb on - strand at 4319.535 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.855 kb on + strand, within DZA65_RS19965 at 4319.856 kb on - strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.908 kb on - strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4320.048 kb on + strand, within DZA65_RS19965 at 4320.049 kb on - strand, within DZA65_RS19965 at 4320.068 kb on + strand, within DZA65_RS19965 at 4320.069 kb on - strand, within DZA65_RS19965 at 4320.294 kb on - strand at 4320.335 kb on + strand at 4320.336 kb on - strand at 4320.336 kb on - strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.340 kb on - strand at 4320.340 kb on - strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.488 kb on - strand, within DZA65_RS19970 at 4320.488 kb on - strand, within DZA65_RS19970 at 4320.690 kb on + strand, within DZA65_RS19970 at 4320.690 kb on + strand, within DZA65_RS19970 at 4320.691 kb on - strand, within DZA65_RS19970 at 4320.772 kb on + strand, within DZA65_RS19970 at 4320.772 kb on + strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.823 kb on - strand, within DZA65_RS19970 at 4321.145 kb on - strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.198 kb on - strand at 4321.364 kb on + strand at 4321.365 kb on - strand at 4321.392 kb on + strand at 4321.392 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.413 kb on + strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.414 kb on - strand at 4321.424 kb on - strand at 4321.491 kb on + strand at 4321.501 kb on + strand at 4321.502 kb on - strand at 4321.512 kb on + strand at 4321.557 kb on + strand at 4321.557 kb on + strand at 4321.557 kb on + strand at 4321.558 kb on - strand at 4321.558 kb on - strand at 4321.558 kb on - strand at 4321.558 kb on - strand at 4321.558 kb on - strand at 4321.558 kb on - strand at 4321.558 kb on - strand at 4321.597 kb on + strand at 4321.597 kb on + strand at 4321.597 kb on + strand at 4321.598 kb on - strand at 4321.598 kb on - strand at 4321.598 kb on - strand at 4321.796 kb on + strand, within DZA65_RS19975 at 4321.863 kb on + strand, within DZA65_RS19975 at 4321.863 kb on + strand, within DZA65_RS19975 at 4321.864 kb on - strand, within DZA65_RS19975 at 4321.976 kb on + strand, within DZA65_RS19975 at 4321.976 kb on + strand, within DZA65_RS19975 at 4321.977 kb on - strand, within DZA65_RS19975 at 4321.977 kb on - strand, within DZA65_RS19975 at 4321.983 kb on + strand, within DZA65_RS19975 at 4321.983 kb on + strand, within DZA65_RS19975 at 4321.983 kb on + strand, within DZA65_RS19975 at 4321.984 kb on - strand, within DZA65_RS19975 at 4321.984 kb on - strand, within DZA65_RS19975 at 4322.032 kb on - strand, within DZA65_RS19975 at 4322.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,319,361 + DZA65_RS19965 0.25 +0.5 4,319,362 - DZA65_RS19965 0.25 +0.0 4,319,362 - DZA65_RS19965 0.25 +1.6 4,319,370 + DZA65_RS19965 0.26 +0.4 4,319,370 + DZA65_RS19965 0.26 -1.6 4,319,371 - DZA65_RS19965 0.26 +0.2 4,319,488 + DZA65_RS19965 0.35 +0.6 4,319,488 + DZA65_RS19965 0.35 -0.0 4,319,488 + DZA65_RS19965 0.35 +0.7 4,319,488 + DZA65_RS19965 0.35 -1.1 4,319,489 - DZA65_RS19965 0.35 -1.9 4,319,489 - +0.1 4,319,535 + DZA65_RS19965 0.39 -0.9 4,319,615 + DZA65_RS19965 0.45 -0.5 4,319,615 + DZA65_RS19965 0.45 +0.2 4,319,615 + DZA65_RS19965 0.45 -0.8 4,319,615 + DZA65_RS19965 0.45 -0.3 4,319,615 + DZA65_RS19965 0.45 -0.7 4,319,615 + DZA65_RS19965 0.45 +0.1 4,319,616 - DZA65_RS19965 0.45 -0.2 4,319,616 - DZA65_RS19965 0.45 -1.2 4,319,616 - DZA65_RS19965 0.45 -0.6 4,319,740 + DZA65_RS19965 0.55 +0.1 4,319,740 + +1.1 4,319,740 + DZA65_RS19965 0.55 +0.2 4,319,740 + DZA65_RS19965 0.55 +0.1 4,319,740 + DZA65_RS19965 0.55 -0.4 4,319,740 + DZA65_RS19965 0.55 -1.5 4,319,740 + DZA65_RS19965 0.55 +0.1 4,319,740 + DZA65_RS19965 0.55 +0.6 4,319,740 + DZA65_RS19965 0.55 -1.2 4,319,740 + DZA65_RS19965 0.55 -1.0 4,319,741 - DZA65_RS19965 0.55 -1.4 4,319,741 - DZA65_RS19965 0.55 -2.2 4,319,741 - DZA65_RS19965 0.55 +0.4 4,319,741 - DZA65_RS19965 0.55 -1.9 4,319,741 - DZA65_RS19965 0.55 -0.2 4,319,741 - DZA65_RS19965 0.55 +0.2 4,319,741 - DZA65_RS19965 0.55 -0.6 4,319,741 - DZA65_RS19965 0.55 +2.1 4,319,741 - DZA65_RS19965 0.55 +4.0 4,319,855 + DZA65_RS19965 0.64 -0.3 4,319,856 - DZA65_RS19965 0.64 -0.4 4,319,907 + DZA65_RS19965 0.68 -0.1 4,319,907 + DZA65_RS19965 0.68 -0.6 4,319,907 + DZA65_RS19965 0.68 -1.5 4,319,907 + DZA65_RS19965 0.68 +0.1 4,319,908 - DZA65_RS19965 0.68 +0.1 4,319,909 + DZA65_RS19965 0.68 -1.2 4,319,909 + DZA65_RS19965 0.68 -0.5 4,319,909 + DZA65_RS19965 0.68 -1.5 4,319,910 - DZA65_RS19965 0.69 -0.6 4,319,910 - DZA65_RS19965 0.69 +4.1 4,319,910 - DZA65_RS19965 0.69 -0.1 4,320,048 + DZA65_RS19965 0.79 -0.9 4,320,049 - DZA65_RS19965 0.80 +1.2 4,320,068 + DZA65_RS19965 0.81 +1.4 4,320,069 - DZA65_RS19965 0.81 -0.6 4,320,294 - +1.8 4,320,335 + +0.8 4,320,336 - +0.8 4,320,336 - -2.8 4,320,339 + -2.2 4,320,339 + -1.2 4,320,339 + +0.7 4,320,339 + -1.5 4,320,339 + -1.1 4,320,340 - -1.4 4,320,340 - -0.0 4,320,358 + -1.5 4,320,358 + -0.9 4,320,358 + +0.9 4,320,358 + +0.2 4,320,358 + -0.8 4,320,358 + -1.3 4,320,358 + -0.7 4,320,359 - +1.5 4,320,359 - -0.0 4,320,359 - -2.6 4,320,359 - -1.2 4,320,359 - -2.5 4,320,359 - +2.6 4,320,359 - +0.1 4,320,359 - -0.5 4,320,360 + +0.4 4,320,360 + +0.8 4,320,360 + +0.3 4,320,360 + -2.7 4,320,360 + -1.2 4,320,360 + -0.8 4,320,360 + -0.1 4,320,360 + +0.7 4,320,360 + +0.7 4,320,360 + -0.0 4,320,360 + -0.2 4,320,360 + +0.4 4,320,360 + +0.2 4,320,360 + -0.1 4,320,361 - +1.1 4,320,361 - -0.5 4,320,361 - +0.1 4,320,361 - +1.3 4,320,361 - -2.6 4,320,361 - -0.2 4,320,361 - -0.3 4,320,361 - +0.2 4,320,361 - +1.5 4,320,361 - -0.6 4,320,361 - -0.9 4,320,487 + DZA65_RS19970 0.18 +0.1 4,320,487 + DZA65_RS19970 0.18 +1.1 4,320,487 + DZA65_RS19970 0.18 -0.1 4,320,487 + DZA65_RS19970 0.18 -1.6 4,320,488 - DZA65_RS19970 0.18 +0.8 4,320,488 - DZA65_RS19970 0.18 +0.1 4,320,690 + DZA65_RS19970 0.42 -0.8 4,320,690 + DZA65_RS19970 0.42 -0.6 4,320,691 - DZA65_RS19970 0.42 +0.8 4,320,772 + DZA65_RS19970 0.51 -0.6 4,320,772 + DZA65_RS19970 0.51 -0.5 4,320,773 - DZA65_RS19970 0.51 +0.4 4,320,773 - DZA65_RS19970 0.51 +0.1 4,320,773 - DZA65_RS19970 0.51 -0.1 4,320,773 - DZA65_RS19970 0.51 -0.9 4,320,822 + DZA65_RS19970 0.57 -1.5 4,320,822 + DZA65_RS19970 0.57 -1.9 4,320,822 + DZA65_RS19970 0.57 -0.9 4,320,822 + DZA65_RS19970 0.57 +0.4 4,320,823 - DZA65_RS19970 0.57 -0.9 4,321,145 - +0.4 4,321,173 + +0.2 4,321,173 + -0.0 4,321,173 + +1.0 4,321,173 + +0.4 4,321,173 + +0.1 4,321,174 - +1.1 4,321,174 - -1.2 4,321,174 - +0.7 4,321,174 - +1.4 4,321,174 - +0.4 4,321,198 - -1.9 4,321,364 + -0.2 4,321,365 - -1.6 4,321,392 + +1.5 4,321,392 + -0.2 4,321,413 + -0.8 4,321,413 + +0.3 4,321,413 + +0.5 4,321,413 + -0.4 4,321,413 + +1.1 4,321,413 + -0.0 4,321,413 + -0.2 4,321,413 + -0.2 4,321,413 + -0.4 4,321,413 + +0.7 4,321,413 + -0.3 4,321,413 + +0.1 4,321,413 + -0.3 4,321,413 + +0.8 4,321,414 - -0.9 4,321,414 - -1.7 4,321,414 - +0.4 4,321,414 - -0.3 4,321,414 - -0.9 4,321,414 - -0.4 4,321,414 - +0.8 4,321,414 - -1.4 4,321,414 - -1.1 4,321,414 - -0.9 4,321,414 - -1.0 4,321,414 - -0.3 4,321,414 - -0.4 4,321,414 - +0.8 4,321,414 - -1.0 4,321,414 - +0.6 4,321,424 - +0.7 4,321,491 + -1.8 4,321,501 + -0.1 4,321,502 - -1.2 4,321,512 + +0.1 4,321,557 + +1.4 4,321,557 + +0.3 4,321,557 + -2.4 4,321,558 - -1.5 4,321,558 - +1.4 4,321,558 - +0.5 4,321,558 - -0.5 4,321,558 - +2.1 4,321,558 - +0.8 4,321,558 - -0.8 4,321,597 + +0.4 4,321,597 + +1.1 4,321,597 + +1.4 4,321,598 - +0.9 4,321,598 - -1.6 4,321,598 - +0.4 4,321,796 + DZA65_RS19975 0.33 -0.2 4,321,863 + DZA65_RS19975 0.47 +0.5 4,321,863 + DZA65_RS19975 0.47 +0.1 4,321,864 - DZA65_RS19975 0.47 -1.1 4,321,976 + DZA65_RS19975 0.71 +0.4 4,321,976 + DZA65_RS19975 0.71 -0.9 4,321,977 - DZA65_RS19975 0.71 +0.4 4,321,977 - DZA65_RS19975 0.71 -0.0 4,321,983 + DZA65_RS19975 0.73 +0.5 4,321,983 + DZA65_RS19975 0.73 -0.2 4,321,983 + DZA65_RS19975 0.73 +0.1 4,321,984 - DZA65_RS19975 0.73 +0.1 4,321,984 - DZA65_RS19975 0.73 +0.8 4,322,032 - DZA65_RS19975 0.83 -1.2 4,322,165 - -1.3
Or see this region's nucleotide sequence