Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19910

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,307,992	+		DZA65_RS19905	0.63	-0.9
4,307,992	+		DZA65_RS19905	0.63	+0.3
4,307,992	+		DZA65_RS19905	0.63	-0.5
4,307,992	+		DZA65_RS19905	0.63	+0.3
4,307,992	+		DZA65_RS19905	0.63	+2.3
4,307,993	-		DZA65_RS19905	0.63	-0.8
4,307,993	-		DZA65_RS19905	0.63	+0.1
4,308,039	+		DZA65_RS19905	0.66	-0.9
4,308,039	+		DZA65_RS19905	0.66	-1.5
4,308,039	+		DZA65_RS19905	0.66	+0.8
4,308,040	-		DZA65_RS19905	0.66	-1.0
4,308,040	-		DZA65_RS19905	0.66	-1.4
4,308,047	+		DZA65_RS19905	0.66	+0.3
4,308,047	+		DZA65_RS19905	0.66	-1.6
4,308,047	+		DZA65_RS19905	0.66	+0.6
4,308,047	+		DZA65_RS19905	0.66	-1.5
4,308,048	-		DZA65_RS19905	0.66	-1.5
4,308,048	-		DZA65_RS19905	0.66	-0.2
4,308,048	-		DZA65_RS19905	0.66	-0.1
4,308,048	-		DZA65_RS19905	0.66	+0.3
4,308,049	+		DZA65_RS19905	0.66	-1.5
4,308,049	+		DZA65_RS19905	0.66	-0.7
4,308,049	+		DZA65_RS19905	0.66	-1.7
4,308,050	-		DZA65_RS19905	0.66	+0.1
4,308,093	+		DZA65_RS19905	0.69	+0.1
4,308,105	+		DZA65_RS19905	0.70	-0.2
4,308,107	+		DZA65_RS19905	0.70	-0.3
4,308,108	-		DZA65_RS19905	0.70	-1.5
4,308,108	-		DZA65_RS19905	0.70	-0.7
4,308,172	-		DZA65_RS19905	0.74	-0.5
4,308,172	-		DZA65_RS19905	0.74	-1.7
4,308,173	+		DZA65_RS19905	0.74	-0.8
4,308,173	+		DZA65_RS19905	0.74	-0.5
4,308,173	+		DZA65_RS19905	0.74	-0.0
4,308,173	+		DZA65_RS19905	0.74	+0.5
4,308,173	+		DZA65_RS19905	0.74	+1.1
4,308,174	-		DZA65_RS19905	0.74	-0.8
4,308,174	-		DZA65_RS19905	0.74	+0.0
4,308,174	-		DZA65_RS19905	0.74	+0.1
4,308,174	-		DZA65_RS19905	0.74	+0.6
4,308,174	-		DZA65_RS19905	0.74	+0.1
4,308,174	-		DZA65_RS19905	0.74	-0.2
4,308,186	+		DZA65_RS19905	0.75	-2.5
4,308,187	-		DZA65_RS19905	0.75	+0.4
4,308,246	+		DZA65_RS19905	0.78	+0.2
4,308,247	-		DZA65_RS19905	0.78	-0.1
4,308,247	-		DZA65_RS19905	0.78	-2.1
4,308,251	+		DZA65_RS19905	0.79	-1.1
4,308,251	+		DZA65_RS19905	0.79	-0.5
4,308,252	-		DZA65_RS19905	0.79	+0.3
4,308,252	-		DZA65_RS19905	0.79	+0.5
4,308,252	-		DZA65_RS19905	0.79	-0.5
4,308,252	-		DZA65_RS19905	0.79	+0.3
4,308,252	-		DZA65_RS19905	0.79	-1.5
4,308,255	+		DZA65_RS19905	0.79	-1.2
4,308,415	-		DZA65_RS19905	0.88	-1.7
4,308,415	-		DZA65_RS19905	0.88	-0.1
4,308,422	+		DZA65_RS19905	0.89	+0.2
4,308,422	+		DZA65_RS19905	0.89	+0.9
4,308,423	-		DZA65_RS19905	0.89	+0.5
4,308,423	-		DZA65_RS19905	0.89	+0.5
4,308,423	-		DZA65_RS19905	0.89	+0.3
4,308,423	-		DZA65_RS19905	0.89	-0.1
4,308,426	-		DZA65_RS19905	0.89	+0.2
4,308,447	+				+0.3
4,308,448	-				-0.5
4,308,451	-				-0.7
4,308,502	-				+2.9
4,308,502	-				+1.1
4,308,512	+				-0.1
4,308,512	+				+1.1
4,308,549	+				+1.8
4,308,549	+				+0.1
4,308,549	+				-0.5
4,308,550	-				+2.1
4,308,550	-				+0.3
4,308,553	+				-1.1
4,308,554	-				-0.2
4,308,554	-				-1.0
4,308,554	-				-3.4
4,308,589	+				-1.2
4,308,590	-				-0.3
4,308,614	+				-0.5
4,308,640	+				+1.7
4,308,667	-				+1.1
4,308,671	+				-0.7
4,308,672	-				-0.9
4,308,685	+				-0.2
4,308,690	+				-0.2
4,308,716	-				-0.2
4,308,736	+				+0.3
4,308,736	+				+0.9
4,308,737	-				-0.3
4,308,737	-				-0.1
4,308,737	-				+1.1
4,308,784	-				+2.1
4,308,787	+				+0.3
4,308,795	-				+2.1
4,308,842	-				-0.5
4,308,885	+				-1.5
4,308,886	-				+0.1
4,308,887	+				+0.3
4,308,887	+				-1.7
4,308,887	+				+2.1
4,308,887	+				+0.6
4,308,888	-				+1.8
4,308,888	-				+2.1
4,308,888	-				-0.6
4,308,888	-				-1.2
4,308,888	-				-2.6
4,308,948	+				-0.0
4,308,949	-				-0.5
4,309,097	+		DZA65_RS19910	0.24	+0.6
4,309,145	-		DZA65_RS19910	0.33	-0.6
4,309,166	-		DZA65_RS19910	0.36	-0.4
4,309,283	+		DZA65_RS19910	0.58	+1.8
4,309,284	-		DZA65_RS19910	0.58	+1.7
4,309,471	+				-0.4
4,309,471	+				-0.5
4,309,471	+				+0.3
4,309,471	+				+3.1
4,309,471	+				+1.1
4,309,471	+				+0.2
4,309,471	+				-0.5
4,309,471	+				-0.6
4,309,471	+				+1.8
4,309,471	+				+1.1
4,309,471	+				-0.7
4,309,471	+				-0.6
4,309,471	+				-0.5
4,309,471	+				+0.3
4,309,471	+				+1.9
4,309,471	+				+0.8
4,309,471	+				+0.9
4,309,471	+				-0.3
4,309,471	+				+2.7
4,309,472	-				+0.5
4,309,472	-				+0.5
4,309,472	-				-1.7
4,309,472	-				+0.1
4,309,472	-				+1.8
4,309,472	-				-0.1
4,309,472	-				+0.7
4,309,472	-				+0.4
4,309,472	-				-0.9
4,309,472	-				-0.7
4,309,472	-				-0.3
4,309,472	-				+0.3
4,309,472	-				-0.2
4,309,497	-				-0.5
4,309,593	-				-1.2
4,309,593	-				+1.7
4,309,718	+		DZA65_RS19915	0.15	-0.8
4,309,762	+		DZA65_RS19915	0.18	+0.5
4,309,762	+		DZA65_RS19915	0.18	-0.6
4,309,762	+		DZA65_RS19915	0.18	+0.3
4,309,762	+		DZA65_RS19915	0.18	-2.5
4,309,762	+		DZA65_RS19915	0.18	+0.8
4,309,762	+		DZA65_RS19915	0.18	+0.8
4,309,763	-		DZA65_RS19915	0.18	-0.2
4,309,763	-		DZA65_RS19915	0.18	-0.8
4,309,763	-		DZA65_RS19915	0.18	+1.3
4,309,766	+		DZA65_RS19915	0.18	+2.3
4,309,766	+		DZA65_RS19915	0.18	-0.2
4,309,766	+		DZA65_RS19915	0.18	-0.4
4,309,767	-		DZA65_RS19915	0.18	-1.8
4,309,938	+				+3.9
4,309,938	+		DZA65_RS19915	0.31	+0.3
4,309,939	-		DZA65_RS19915	0.31	-0.5
4,309,939	-		DZA65_RS19915	0.31	+0.1
4,309,969	+		DZA65_RS19915	0.33	-1.2
4,309,969	+		DZA65_RS19915	0.33	-0.9
4,309,970	-		DZA65_RS19915	0.33	+0.8
4,309,970	-		DZA65_RS19915	0.33	-0.2
4,309,970	-		DZA65_RS19915	0.33	+0.5
4,310,178	+		DZA65_RS19915	0.48	-0.2
4,310,366	+		DZA65_RS19915	0.61	+0.3
4,310,368	+		DZA65_RS19915	0.61	+2.4
4,310,368	+		DZA65_RS19915	0.61	-0.1
4,310,368	+		DZA65_RS19915	0.61	+1.4
4,310,369	-		DZA65_RS19915	0.61	+0.4
4,310,398	+		DZA65_RS19915	0.64	+0.8
4,310,398	+		DZA65_RS19915	0.64	-1.4
4,310,398	+		DZA65_RS19915	0.64	-0.9
4,310,399	-		DZA65_RS19915	0.64	-1.5
4,310,399	-		DZA65_RS19915	0.64	-1.2
4,310,399	-		DZA65_RS19915	0.64	+0.5