Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19460

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,209,819	+		DZA65_RS19455	0.36	-1.3
4,209,819	+		DZA65_RS19455	0.36	-0.0
4,209,820	-		DZA65_RS19455	0.36	-0.6
4,209,820	-		DZA65_RS19455	0.36	-0.9
4,209,859	+		DZA65_RS19455	0.39	+1.2
4,209,859	+		DZA65_RS19455	0.39	-0.9
4,209,860	-		DZA65_RS19455	0.39	+1.1
4,209,860	-		DZA65_RS19455	0.39	-1.3
4,209,860	-		DZA65_RS19455	0.39	-0.1
4,209,860	-		DZA65_RS19455	0.39	-0.8
4,209,941	+		DZA65_RS19455	0.45	-0.1
4,209,941	+		DZA65_RS19455	0.45	-0.6
4,209,941	+		DZA65_RS19455	0.45	-0.4
4,209,948	+		DZA65_RS19455	0.46	+0.6
4,209,948	+		DZA65_RS19455	0.46	-0.3
4,209,948	+		DZA65_RS19455	0.46	-0.6
4,209,948	+		DZA65_RS19455	0.46	+0.8
4,209,948	+		DZA65_RS19455	0.46	+0.1
4,209,948	+		DZA65_RS19455	0.46	-1.3
4,209,948	+		DZA65_RS19455	0.46	-1.0
4,209,948	+		DZA65_RS19455	0.46	-0.5
4,209,948	+		DZA65_RS19455	0.46	+0.3
4,209,949	-		DZA65_RS19455	0.46	+1.1
4,209,949	-		DZA65_RS19455	0.46	+1.2
4,209,949	-		DZA65_RS19455	0.46	+0.1
4,209,962	+		DZA65_RS19455	0.47	-0.0
4,210,042	+		DZA65_RS19455	0.53	-1.4
4,210,042	+		DZA65_RS19455	0.53	-0.4
4,210,043	-		DZA65_RS19455	0.53	-1.9
4,210,043	-		DZA65_RS19455	0.53	-0.9
4,210,043	-		DZA65_RS19455	0.53	+0.1
4,210,064	+		DZA65_RS19455	0.55	+0.1
4,210,065	-		DZA65_RS19455	0.55	+1.0
4,210,065	-		DZA65_RS19455	0.55	-0.4
4,210,065	-		DZA65_RS19455	0.55	+0.8
4,210,065	-		DZA65_RS19455	0.55	-0.2
4,210,127	+		DZA65_RS19455	0.59	+0.9
4,210,127	+		DZA65_RS19455	0.59	-0.1
4,210,127	+		DZA65_RS19455	0.59	-0.5
4,210,127	+		DZA65_RS19455	0.59	-1.8
4,210,127	+		DZA65_RS19455	0.59	+1.1
4,210,128	-		DZA65_RS19455	0.60	-0.2
4,210,128	-		DZA65_RS19455	0.60	-0.4
4,210,144	-		DZA65_RS19455	0.61	+0.6
4,210,164	-		DZA65_RS19455	0.62	+0.1
4,210,164	-		DZA65_RS19455	0.62	-1.3
4,210,333	+		DZA65_RS19455	0.75	-0.9
4,210,333	+		DZA65_RS19455	0.75	+0.5
4,210,333	+		DZA65_RS19455	0.75	-1.3
4,210,333	+		DZA65_RS19455	0.75	-0.3
4,210,333	+		DZA65_RS19455	0.75	-0.8
4,210,333	+		DZA65_RS19455	0.75	-0.8
4,210,333	+		DZA65_RS19455	0.75	-0.9
4,210,333	+		DZA65_RS19455	0.75	+0.7
4,210,333	+		DZA65_RS19455	0.75	-0.5
4,210,334	-		DZA65_RS19455	0.75	+0.1
4,210,334	-		DZA65_RS19455	0.75	-0.7
4,210,334	-		DZA65_RS19455	0.75	-0.3
4,210,334	-		DZA65_RS19455	0.75	+0.1
4,210,334	-		DZA65_RS19455	0.75	+0.7
4,210,334	-		DZA65_RS19455	0.75	-0.5
4,210,334	-		DZA65_RS19455	0.75	+1.1
4,210,334	-		DZA65_RS19455	0.75	+0.1
4,210,382	+		DZA65_RS19455	0.79	-0.5
4,210,382	+		DZA65_RS19455	0.79	+0.1
4,210,382	+		DZA65_RS19455	0.79	+1.4
4,210,514	+		DZA65_RS19455	0.89	+0.3
4,210,565	+				-1.5
4,210,565	+				-0.5
4,210,565	+				-0.4
4,210,566	-				+0.3
4,210,566	-				+0.8
4,210,566	-				-0.6
4,210,566	-				-0.9
4,210,662	-				+0.8
4,210,662	-				-1.8
4,210,662	-				-0.9
4,210,682	+				+0.0
4,210,713	+				+0.9
4,210,730	+				+1.2
4,210,799	+				-0.4
4,210,800	-				+0.2
4,210,801	+				+1.8
4,210,802	-				-0.3
4,210,808	+				-0.6
4,210,836	-				-0.9
4,210,838	+				-0.5
4,210,838	+				+0.5
4,210,838	+				-0.5
4,210,838	+				+0.1
4,210,838	+				-1.5
4,210,838	+				-0.3
4,210,838	+				-0.2
4,210,839	-				-1.9
4,210,839	-				+0.5
4,210,839	-				-0.8
4,210,839	-				+0.5
4,210,839	-				+0.7
4,210,839	-				+0.9
4,210,839	-				+1.3
4,210,839	-				-0.3
4,210,849	+		DZA65_RS19460	0.10	-0.9
4,210,850	-		DZA65_RS19460	0.10	-0.2
4,210,850	-		DZA65_RS19460	0.10	-0.6
4,210,858	+		DZA65_RS19460	0.12	+0.1
4,210,860	+		DZA65_RS19460	0.12	-0.5
4,210,860	+		DZA65_RS19460	0.12	+0.1
4,210,860	+		DZA65_RS19460	0.12	-1.3
4,210,860	+		DZA65_RS19460	0.12	-0.9
4,210,860	+				+3.6
4,210,860	+		DZA65_RS19460	0.12	-0.5
4,210,860	+		DZA65_RS19460	0.12	-1.3
4,210,860	+		DZA65_RS19460	0.12	-0.5
4,210,860	+		DZA65_RS19460	0.12	-1.8
4,210,860	+		DZA65_RS19460	0.12	-0.5
4,210,860	+		DZA65_RS19460	0.12	-0.5
4,210,861	-				+1.1
4,210,861	-		DZA65_RS19460	0.12	-0.5
4,210,861	-		DZA65_RS19460	0.12	-0.9
4,210,861	-		DZA65_RS19460	0.12	+0.1
4,210,861	-		DZA65_RS19460	0.12	-0.9
4,210,861	-		DZA65_RS19460	0.12	-1.5
4,210,861	-		DZA65_RS19460	0.12	+0.3
4,210,861	-		DZA65_RS19460	0.12	-0.5
4,210,861	-		DZA65_RS19460	0.12	-1.1
4,211,006	-		DZA65_RS19460	0.37	-0.8
4,211,204	+		DZA65_RS19460	0.70	+0.3
4,211,205	-		DZA65_RS19460	0.71	-3.0
4,211,205	-		DZA65_RS19460	0.71	-1.8
4,211,205	-		DZA65_RS19460	0.71	+0.1
4,211,205	-		DZA65_RS19460	0.71	-0.5
4,211,205	-		DZA65_RS19460	0.71	+0.6
4,211,205	-		DZA65_RS19460	0.71	-0.5
4,211,319	+				-0.5
4,211,347	+				+0.7
4,211,347	+				-1.8
4,211,347	+				-0.5
4,211,348	-				+0.7
4,211,348	-				-1.6
4,211,348	-				-1.1
4,211,352	-				+0.2
4,211,352	-				+0.0
4,211,352	-				+0.2
4,211,352	-				+0.2
4,211,366	+				+0.6
4,211,366	+				-1.6
4,211,366	+				-0.1
4,211,366	+				+0.2
4,211,366	+				+0.2
4,211,366	+				-0.1
4,211,366	+				+0.4
4,211,366	+				-1.1
4,211,367	-				-0.4
4,211,367	-				-0.9
4,211,367	-				-0.9
4,211,367	-				+0.5
4,211,367	-				+1.1
4,211,367	-				-1.6
4,211,367	-				+0.6
4,211,377	+				+0.1
4,211,377	+				+0.8
4,211,377	+				-0.4
4,211,377	+				+0.3
4,211,378	-				-0.9
4,211,378	-				-0.1
4,211,421	+				+1.9
4,211,421	+				+1.1
4,211,421	+				+0.2
4,211,422	-				+0.7
4,211,437	+				+0.1
4,211,520	+				+2.3
4,211,521	-				-0.5
4,211,528	-				-1.5
4,211,543	+				-1.8
4,211,564	+				-0.3
4,211,564	+				+0.5
4,211,576	+				+1.1
4,211,577	-				-0.5
4,211,582	+				-0.2
4,211,582	+				-0.0
4,211,582	+				+1.7
4,211,583	-				+2.1
4,211,586	+				+0.0
4,211,586	+				-0.0
4,211,586	+				+0.4
4,211,586	+				-0.2
4,211,586	+				+1.1
4,211,586	+				-0.1
4,211,586	+				-0.0
4,211,586	+				-0.9
4,211,586	+				-0.8
4,211,586	+				-0.0
4,211,586	+				+0.6
4,211,587	-				-0.6
4,211,587	-				-0.1
4,211,587	-				-0.3
4,211,587	-				-1.1
4,211,594	+				+1.4
4,211,594	+				+2.1
4,211,595	-				-0.2
4,211,670	+				-2.4
4,211,686	+				-0.6
4,211,686	+				+0.5
4,211,690	+				+0.7
4,211,690	+				+0.2
4,211,690	+				+0.1
4,211,690	+				-0.3
4,211,690	+				-0.1
4,211,691	-				+2.1
4,211,691	-				+1.5
4,211,702	+				-0.3
4,211,702	+				-0.8
4,211,702	+				-0.5
4,211,702	+				-0.9
4,211,702	+				-0.8
4,211,702	+				-0.8
4,211,703	-				-0.0
4,211,703	-				+2.5
4,211,703	-				-1.3
4,211,703	-				+0.6
4,211,703	-				-0.7
4,211,750	+				-0.2
4,211,750	+				-0.3
4,211,751	-				-1.5
4,211,751	-				+0.5
4,211,828	+				-0.0
4,211,828	+				+0.5
4,211,925	+		DZA65_RS19465	0.10	-1.5
4,211,925	+		DZA65_RS19465	0.10	+2.4
4,211,926	-		DZA65_RS19465	0.10	+1.2
4,211,926	-		DZA65_RS19465	0.10	-1.7
4,211,926	-		DZA65_RS19465	0.10	+1.1
4,211,936	+		DZA65_RS19465	0.11	+1.0
4,211,937	-		DZA65_RS19465	0.12	+0.3
4,211,937	-		DZA65_RS19465	0.12	-1.8
4,211,987	+		DZA65_RS19465	0.17	+1.1
4,211,987	+		DZA65_RS19465	0.17	+0.1
4,211,987	+		DZA65_RS19465	0.17	+0.7
4,211,987	+		DZA65_RS19465	0.17	-1.3
4,211,988	-		DZA65_RS19465	0.17	-1.9
4,211,988	-		DZA65_RS19465	0.17	+2.5
4,211,988	-		DZA65_RS19465	0.17	+0.3
4,211,988	-		DZA65_RS19465	0.17	-1.8
4,211,997	+		DZA65_RS19465	0.18	-0.3
4,211,998	-				+0.1
4,211,998	-		DZA65_RS19465	0.18	-0.6
4,211,998	-		DZA65_RS19465	0.18	+0.7
4,212,129	-		DZA65_RS19465	0.32	+0.1
4,212,143	+		DZA65_RS19465	0.33	+1.8
4,212,144	-		DZA65_RS19465	0.33	-0.5
4,212,144	-		DZA65_RS19465	0.33	+1.4
4,212,144	-		DZA65_RS19465	0.33	-0.9
4,212,146	+		DZA65_RS19465	0.33	-2.5
4,212,146	+		DZA65_RS19465	0.33	+1.1
4,212,146	+		DZA65_RS19465	0.33	+0.6
4,212,147	-		DZA65_RS19465	0.34	+1.5
4,212,147	-		DZA65_RS19465	0.34	+0.3
4,212,147	-		DZA65_RS19465	0.34	-0.9
4,212,147	-		DZA65_RS19465	0.34	+0.1
4,212,147	-		DZA65_RS19465	0.34	-0.3
4,212,152	+		DZA65_RS19465	0.34	+1.6
4,212,152	+		DZA65_RS19465	0.34	-0.9
4,212,152	+		DZA65_RS19465	0.34	+0.1
4,212,152	+		DZA65_RS19465	0.34	-0.9
4,212,153	-		DZA65_RS19465	0.34	-1.8
4,212,153	-		DZA65_RS19465	0.34	-0.9
4,212,153	-		DZA65_RS19465	0.34	-0.6
4,212,153	-		DZA65_RS19465	0.34	-0.3
4,212,153	-		DZA65_RS19465	0.34	-0.8
4,212,224	+		DZA65_RS19465	0.42	-2.3
4,212,224	+		DZA65_RS19465	0.42	+0.3
4,212,224	+		DZA65_RS19465	0.42	+1.4
4,212,224	+		DZA65_RS19465	0.42	-0.6
4,212,225	-		DZA65_RS19465	0.42	+0.8
4,212,225	-		DZA65_RS19465	0.42	+0.6
4,212,225	-		DZA65_RS19465	0.42	+0.9
4,212,237	+		DZA65_RS19465	0.43	+1.6
4,212,238	-		DZA65_RS19465	0.43	-0.6
4,212,238	-		DZA65_RS19465	0.43	+0.2
4,212,238	-		DZA65_RS19465	0.43	+0.2
4,212,238	-		DZA65_RS19465	0.43	+1.4
4,212,364	-		DZA65_RS19465	0.56	+0.1
4,212,364	-		DZA65_RS19465	0.56	-2.1