Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18425

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,970,826	+				-1.2
3,970,851	+				+0.4
3,970,919	+				+1.4
3,970,919	+				+0.8
3,970,920	-				-0.3
3,970,920	-				-0.3
3,970,928	+				+1.0
3,970,928	+				-1.7
3,970,928	+				-1.6
3,970,929	-				+1.0
3,970,929	-				-0.0
3,970,929	-				+1.8
3,970,929	-				-0.0
3,971,046	-		DZA65_RS18420	0.19	-0.8
3,971,164	+		DZA65_RS18420	0.32	+0.6
3,971,164	+		DZA65_RS18420	0.32	+1.1
3,971,164	+		DZA65_RS18420	0.32	+1.3
3,971,165	-		DZA65_RS18420	0.32	-2.3
3,971,165	-		DZA65_RS18420	0.32	+0.5
3,971,165	-		DZA65_RS18420	0.32	+0.7
3,971,245	+		DZA65_RS18420	0.41	+0.4
3,971,275	+		DZA65_RS18420	0.45	-1.4
3,971,275	+		DZA65_RS18420	0.45	-0.1
3,971,276	-		DZA65_RS18420	0.45	+0.8
3,971,288	+		DZA65_RS18420	0.46	-1.0
3,971,358	+		DZA65_RS18420	0.54	-1.4
3,971,358	+		DZA65_RS18420	0.54	+1.7
3,971,359	-				+0.4
3,971,436	+		DZA65_RS18420	0.63	+0.3
3,971,437	-		DZA65_RS18420	0.63	+0.7
3,971,501	+		DZA65_RS18420	0.70	-1.1
3,971,501	+		DZA65_RS18420	0.70	-0.4
3,971,501	+		DZA65_RS18420	0.70	-0.3
3,971,501	+		DZA65_RS18420	0.70	-0.5
3,971,502	-		DZA65_RS18420	0.70	+0.4
3,971,594	+		DZA65_RS18420	0.81	+0.0
3,971,636	+		DZA65_RS18420	0.86	+1.1
3,971,637	-		DZA65_RS18420	0.86	-0.2
3,971,637	-		DZA65_RS18420	0.86	-0.6
3,971,660	+		DZA65_RS18420	0.88	+0.4
3,971,660	+		DZA65_RS18420	0.88	+0.2
3,971,660	+		DZA65_RS18420	0.88	-0.6
3,971,660	+		DZA65_RS18420	0.88	-0.2
3,971,660	+		DZA65_RS18420	0.88	+1.0
3,971,661	-		DZA65_RS18420	0.88	-1.6
3,971,661	-		DZA65_RS18420	0.88	-0.8
3,971,661	-		DZA65_RS18420	0.88	-0.8
3,971,661	-		DZA65_RS18420	0.88	+0.1
3,971,661	-		DZA65_RS18420	0.88	+0.4
3,971,661	-		DZA65_RS18420	0.88	-1.2
3,971,681	+				-1.0
3,971,681	+				+0.3
3,971,681	+				+0.7
3,971,682	-				+0.4
3,971,725	+				-0.0
3,971,725	+				-0.3
3,971,725	+				-0.7
3,971,728	+				+0.2
3,971,728	+				-0.6
3,971,729	-				-0.5
3,971,803	+				+1.5
3,971,804	-				-0.4
3,971,812	+				+0.8
3,971,813	-				-1.4
3,971,921	-				-0.5
3,971,972	-		DZA65_RS18425	0.13	-1.0
3,972,071	-		DZA65_RS18425	0.21	-0.2
3,972,291	+		DZA65_RS18425	0.39	+2.1
3,972,291	+		DZA65_RS18425	0.39	+0.4
3,972,291	+		DZA65_RS18425	0.39	-2.8
3,972,292	-		DZA65_RS18425	0.39	-2.8
3,972,292	-		DZA65_RS18425	0.39	-0.6
3,972,292	-				-1.6
3,972,426	+		DZA65_RS18425	0.50	-0.0
3,972,426	+		DZA65_RS18425	0.50	+1.0
3,972,426	+		DZA65_RS18425	0.50	-2.5
3,972,426	+		DZA65_RS18425	0.50	-0.4
3,972,426	+		DZA65_RS18425	0.50	+0.1
3,972,426	+		DZA65_RS18425	0.50	+1.0
3,972,426	+		DZA65_RS18425	0.50	-1.5
3,972,427	-		DZA65_RS18425	0.50	-0.0
3,972,427	-		DZA65_RS18425	0.50	-0.2
3,972,427	-		DZA65_RS18425	0.50	+1.0
3,972,427	-		DZA65_RS18425	0.50	+0.0
3,972,427	-				+2.2
3,972,545	+		DZA65_RS18425	0.59	+0.2
3,972,545	+		DZA65_RS18425	0.59	+0.5
3,972,545	+		DZA65_RS18425	0.59	+0.5
3,972,546	-		DZA65_RS18425	0.59	-0.0
3,972,546	-		DZA65_RS18425	0.59	-0.0
3,972,546	-		DZA65_RS18425	0.59	-0.5
3,972,546	-		DZA65_RS18425	0.59	-0.8
3,972,558	-		DZA65_RS18425	0.60	-0.3
3,972,558	-		DZA65_RS18425	0.60	+0.2
3,972,796	+		DZA65_RS18425	0.79	+0.7
3,972,796	+		DZA65_RS18425	0.79	+1.0
3,972,796	+		DZA65_RS18425	0.79	-0.0
3,972,796	+		DZA65_RS18425	0.79	-0.1
3,972,796	+		DZA65_RS18425	0.79	+1.2
3,972,796	+		DZA65_RS18425	0.79	+0.3
3,972,796	+		DZA65_RS18425	0.79	+0.2
3,972,796	+		DZA65_RS18425	0.79	+0.6
3,972,797	-		DZA65_RS18425	0.80	+0.8
3,972,797	-		DZA65_RS18425	0.80	+0.4
3,972,797	-		DZA65_RS18425	0.80	+0.7
3,972,797	-		DZA65_RS18425	0.80	-1.0
3,972,797	-		DZA65_RS18425	0.80	+0.8
3,972,797	-		DZA65_RS18425	0.80	-0.3
3,972,797	-		DZA65_RS18425	0.80	+0.2
3,972,825	+		DZA65_RS18425	0.82	+1.0
3,972,825	+		DZA65_RS18425	0.82	+1.1
3,972,825	+				+1.0
3,972,825	+		DZA65_RS18425	0.82	+1.0
3,972,826	-		DZA65_RS18425	0.82	+1.0
3,972,826	-		DZA65_RS18425	0.82	+0.3
3,972,826	-		DZA65_RS18425	0.82	+0.5
3,972,826	-		DZA65_RS18425	0.82	-1.1
3,972,923	-		DZA65_RS18425	0.90	+0.4
3,972,923	-		DZA65_RS18425	0.90	+0.5
3,972,923	-		DZA65_RS18425	0.90	+1.4
3,973,057	+				-0.0
3,973,110	+				-1.8
3,973,110	+				-0.0
3,973,111	-				-0.0
3,973,111	-				-0.6
3,973,570	+		DZA65_RS18430	0.51	-0.8
3,973,571	-		DZA65_RS18430	0.51	-1.4
3,973,571	-		DZA65_RS18430	0.51	+1.4
3,973,600	+		DZA65_RS18430	0.54	-1.4
3,973,600	+		DZA65_RS18430	0.54	+0.6
3,973,600	+		DZA65_RS18430	0.54	-0.6
3,973,601	-		DZA65_RS18430	0.54	-2.2
3,973,603	+		DZA65_RS18430	0.54	-0.4
3,973,603	+		DZA65_RS18430	0.54	-1.1
3,973,603	+		DZA65_RS18430	0.54	-0.5
3,973,603	+		DZA65_RS18430	0.54	+0.3
3,973,603	+		DZA65_RS18430	0.54	+0.2
3,973,603	+		DZA65_RS18430	0.54	+0.5
3,973,603	+		DZA65_RS18430	0.54	+2.1
3,973,603	+		DZA65_RS18430	0.54	+1.6
3,973,603	+		DZA65_RS18430	0.54	-0.2
3,973,603	+		DZA65_RS18430	0.54	-1.6
3,973,604	-		DZA65_RS18430	0.55	-2.1
3,973,604	-		DZA65_RS18430	0.55	+1.5
3,973,604	-		DZA65_RS18430	0.55	+0.0
3,973,604	-		DZA65_RS18430	0.55	-2.2
3,973,604	-		DZA65_RS18430	0.55	+0.3
3,973,604	-		DZA65_RS18430	0.55	-0.6
3,973,604	-		DZA65_RS18430	0.55	-0.4
3,973,604	-		DZA65_RS18430	0.55	-1.1
3,973,604	-		DZA65_RS18430	0.55	+0.0
3,973,604	-		DZA65_RS18430	0.55	-0.3
3,973,664	-		DZA65_RS18430	0.60	-0.4
3,973,939	+		DZA65_RS18430	0.87	+1.0
3,974,039	+				-1.0
3,974,039	+				-0.1
3,974,040	-				-1.4
3,974,040	-				+0.7
3,974,040	-				+0.1
3,974,040	-				-2.4
3,974,040	-				+0.6
3,974,044	+				-1.1
3,974,044	+				+0.4
3,974,044	+				-0.7
3,974,045	-				+2.0
3,974,045	-				+0.9
3,974,045	-				+0.3