Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17635

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,798,017	+		DZA65_RS17630	0.32	+0.9
3,798,018	-		DZA65_RS17630	0.32	-0.6
3,798,018	-		DZA65_RS17630	0.32	-0.2
3,798,137	+		DZA65_RS17630	0.40	+1.2
3,798,137	+		DZA65_RS17630	0.40	-0.6
3,798,137	+		DZA65_RS17630	0.40	-1.1
3,798,137	+		DZA65_RS17630	0.40	-0.3
3,798,137	+		DZA65_RS17630	0.40	+0.6
3,798,138	-		DZA65_RS17630	0.40	-0.4
3,798,157	+		DZA65_RS17630	0.41	-0.4
3,798,158	-		DZA65_RS17630	0.41	+0.5
3,798,158	-		DZA65_RS17630	0.41	-0.7
3,798,173	+		DZA65_RS17630	0.43	-0.5
3,798,174	-		DZA65_RS17630	0.43	-0.3
3,798,195	+		DZA65_RS17630	0.44	+1.4
3,798,196	-		DZA65_RS17630	0.44	+0.9
3,798,204	+		DZA65_RS17630	0.45	+0.4
3,798,204	+		DZA65_RS17630	0.45	-1.8
3,798,215	+		DZA65_RS17630	0.45	+0.3
3,798,216	-		DZA65_RS17630	0.46	-0.3
3,798,216	-		DZA65_RS17630	0.46	-0.3
3,798,219	+		DZA65_RS17630	0.46	-0.2
3,798,237	+		DZA65_RS17630	0.47	-0.5
3,798,237	+		DZA65_RS17630	0.47	+0.5
3,798,238	-		DZA65_RS17630	0.47	-0.3
3,798,258	+		DZA65_RS17630	0.48	+0.7
3,798,258	+		DZA65_RS17630	0.48	-0.7
3,798,258	+		DZA65_RS17630	0.48	-1.4
3,798,259	-		DZA65_RS17630	0.49	-0.6
3,798,259	-		DZA65_RS17630	0.49	+0.2
3,798,262	+		DZA65_RS17630	0.49	+0.4
3,798,262	+		DZA65_RS17630	0.49	+1.2
3,798,262	+		DZA65_RS17630	0.49	-0.3
3,798,263	-		DZA65_RS17630	0.49	-0.0
3,798,263	-		DZA65_RS17630	0.49	-0.5
3,798,279	+		DZA65_RS17630	0.50	-0.1
3,798,590	+		DZA65_RS17630	0.72	+0.7
3,798,590	+		DZA65_RS17630	0.72	+0.1
3,798,591	-		DZA65_RS17630	0.72	-1.5
3,798,591	-		DZA65_RS17630	0.72	-0.9
3,798,591	-		DZA65_RS17630	0.72	-0.6
3,798,591	-		DZA65_RS17630	0.72	+0.4
3,798,591	-		DZA65_RS17630	0.72	+0.5
3,798,591	-		DZA65_RS17630	0.72	+0.5
3,798,591	-		DZA65_RS17630	0.72	-0.7
3,798,592	+		DZA65_RS17630	0.72	+0.5
3,798,592	+		DZA65_RS17630	0.72	-2.1
3,798,592	+		DZA65_RS17630	0.72	+0.9
3,798,592	+		DZA65_RS17630	0.72	+2.2
3,798,593	-		DZA65_RS17630	0.72	+0.5
3,798,593	-		DZA65_RS17630	0.72	+0.3
3,798,664	+		DZA65_RS17630	0.77	+0.9
3,798,664	+		DZA65_RS17630	0.77	-0.9
3,798,664	+		DZA65_RS17630	0.77	-1.4
3,798,665	-		DZA65_RS17630	0.77	+0.4
3,798,665	-		DZA65_RS17630	0.77	-0.4
3,798,665	-		DZA65_RS17630	0.77	-0.1
3,798,667	+		DZA65_RS17630	0.77	-1.9
3,798,667	+		DZA65_RS17630	0.77	+1.0
3,798,667	+		DZA65_RS17630	0.77	-1.5
3,798,667	+		DZA65_RS17630	0.77	+1.2
3,798,667	+		DZA65_RS17630	0.77	+0.7
3,798,667	+		DZA65_RS17630	0.77	-0.5
3,798,668	-		DZA65_RS17630	0.77	-1.1
3,798,668	-		DZA65_RS17630	0.77	+0.3
3,798,668	-		DZA65_RS17630	0.77	-0.7
3,798,668	-		DZA65_RS17630	0.77	+1.6
3,798,670	+		DZA65_RS17630	0.77	+0.4
3,798,670	+		DZA65_RS17630	0.77	-1.1
3,798,671	-		DZA65_RS17630	0.77	-1.3
3,798,671	-		DZA65_RS17630	0.77	-1.7
3,798,671	-		DZA65_RS17630	0.77	-0.7
3,798,671	-		DZA65_RS17630	0.77	+0.3
3,798,671	-		DZA65_RS17630	0.77	+0.5
3,798,718	+		DZA65_RS17630	0.80	+1.1
3,798,718	+		DZA65_RS17630	0.80	+0.2
3,798,718	+		DZA65_RS17630	0.80	+1.1
3,798,739	+		DZA65_RS17630	0.82	-0.5
3,798,740	-		DZA65_RS17630	0.82	-1.4
3,798,749	+		DZA65_RS17630	0.83	+0.6
3,798,749	+		DZA65_RS17630	0.83	+0.4
3,798,750	-		DZA65_RS17630	0.83	+0.9
3,798,764	+		DZA65_RS17630	0.84	-0.8
3,798,764	+		DZA65_RS17630	0.84	+0.0
3,798,764	+		DZA65_RS17630	0.84	+0.4
3,798,764	+		DZA65_RS17630	0.84	-1.1
3,798,764	+				+0.9
3,798,765	-		DZA65_RS17630	0.84	-0.7
3,798,765	-		DZA65_RS17630	0.84	-2.4
3,798,765	-		DZA65_RS17630	0.84	+1.3
3,798,765	-		DZA65_RS17630	0.84	-1.4
3,798,766	+		DZA65_RS17630	0.84	+0.9
3,798,766	+		DZA65_RS17630	0.84	-0.9
3,798,766	+				+2.5
3,798,766	+		DZA65_RS17630	0.84	-0.6
3,798,766	+		DZA65_RS17630	0.84	+0.0
3,798,766	+		DZA65_RS17630	0.84	-0.3
3,798,766	+		DZA65_RS17630	0.84	-1.4
3,798,766	+		DZA65_RS17630	0.84	-1.0
3,798,766	+		DZA65_RS17630	0.84	+0.2
3,798,766	+		DZA65_RS17630	0.84	-0.3
3,798,766	+		DZA65_RS17630	0.84	+0.3
3,798,766	+		DZA65_RS17630	0.84	-0.4
3,798,766	+		DZA65_RS17630	0.84	-0.5
3,798,766	+		DZA65_RS17630	0.84	-0.6
3,798,766	+		DZA65_RS17630	0.84	+1.1
3,798,766	+		DZA65_RS17630	0.84	+0.2
3,798,766	+		DZA65_RS17630	0.84	-0.3
3,798,766	+		DZA65_RS17630	0.84	+1.1
3,798,766	+		DZA65_RS17630	0.84	+0.5
3,798,766	+		DZA65_RS17630	0.84	-1.7
3,798,767	-		DZA65_RS17630	0.84	-1.4
3,798,767	-		DZA65_RS17630	0.84	-0.1
3,798,767	-		DZA65_RS17630	0.84	-1.4
3,798,767	-				+1.5
3,798,767	-		DZA65_RS17630	0.84	+1.2
3,798,767	-		DZA65_RS17630	0.84	+0.5
3,798,767	-		DZA65_RS17630	0.84	+0.5
3,798,767	-		DZA65_RS17630	0.84	+0.9
3,798,767	-		DZA65_RS17630	0.84	+1.1
3,798,767	-		DZA65_RS17630	0.84	-1.4
3,798,767	-		DZA65_RS17630	0.84	+0.5
3,798,767	-		DZA65_RS17630	0.84	+0.1
3,798,767	-		DZA65_RS17630	0.84	+0.4
3,798,767	-		DZA65_RS17630	0.84	-0.5
3,798,767	-		DZA65_RS17630	0.84	-0.8
3,798,767	-		DZA65_RS17630	0.84	-0.7
3,798,767	-		DZA65_RS17630	0.84	+0.9
3,798,803	-		DZA65_RS17630	0.86	-0.5
3,798,804	+		DZA65_RS17630	0.86	-1.9
3,798,819	-		DZA65_RS17630	0.87	-1.9
3,798,876	+				+0.4
3,798,876	+				+0.6
3,798,876	+				-2.1
3,798,876	+				+0.5
3,798,876	+				+1.3
3,798,876	+				-1.9
3,798,876	+				-0.0
3,798,877	-				-1.4
3,798,877	-				+0.9
3,798,877	-				-0.4
3,798,877	-				+0.9
3,798,877	-				+0.2
3,798,945	+				-0.7
3,798,953	+				+1.3
3,798,953	+				+0.1
3,798,954	-				-0.3
3,798,998	+				+0.4
3,798,999	-				-0.7
3,798,999	-				+0.1
3,798,999	-				+1.3
3,798,999	-				-0.7
3,799,021	+				-0.6
3,799,021	+				-0.0
3,799,021	+				+0.2
3,799,021	+				+1.1
3,799,021	+				+1.2
3,799,022	-				+0.1
3,799,022	-				-1.7
3,799,022	-				-0.4
3,799,022	-				-1.1
3,799,023	+				-0.7
3,799,023	+				+0.1
3,799,023	+				+1.1
3,799,023	+				-0.8
3,799,023	+				+1.0
3,799,023	+				+0.9
3,799,023	+				-1.9
3,799,024	-				-0.5
3,799,053	-				-0.1
3,799,053	-				-0.5
3,799,088	+				+1.9
3,799,089	-				-0.2
3,799,136	-		DZA65_RS17635	0.13	+1.9
3,799,136	-		DZA65_RS17635	0.13	-0.7
3,799,136	-		DZA65_RS17635	0.13	-1.0
3,799,136	-		DZA65_RS17635	0.13	-0.1
3,799,136	-		DZA65_RS17635	0.13	-0.9
3,799,180	+		DZA65_RS17635	0.17	-0.2
3,799,180	+		DZA65_RS17635	0.17	+0.3
3,799,180	+		DZA65_RS17635	0.17	-0.1
3,799,180	+		DZA65_RS17635	0.17	-0.7
3,799,181	-		DZA65_RS17635	0.17	-0.8
3,799,181	-		DZA65_RS17635	0.17	+0.1
3,799,181	-		DZA65_RS17635	0.17	+0.3
3,799,181	-		DZA65_RS17635	0.17	+0.9
3,799,181	-		DZA65_RS17635	0.17	+1.5
3,799,181	-		DZA65_RS17635	0.17	-0.1
3,799,181	-		DZA65_RS17635	0.17	+1.6
3,799,181	-		DZA65_RS17635	0.17	+0.2
3,799,182	+		DZA65_RS17635	0.17	-0.9
3,799,182	+		DZA65_RS17635	0.17	-0.7
3,799,182	+		DZA65_RS17635	0.17	+0.1
3,799,182	+		DZA65_RS17635	0.17	+0.7
3,799,182	+		DZA65_RS17635	0.17	+0.8
3,799,182	+		DZA65_RS17635	0.17	-0.1
3,799,182	+		DZA65_RS17635	0.17	+0.2
3,799,182	+		DZA65_RS17635	0.17	-0.2
3,799,182	+		DZA65_RS17635	0.17	-0.1
3,799,182	+		DZA65_RS17635	0.17	-0.5
3,799,182	+		DZA65_RS17635	0.17	+1.0
3,799,182	+		DZA65_RS17635	0.17	-3.4
3,799,182	+		DZA65_RS17635	0.17	+1.0
3,799,182	+		DZA65_RS17635	0.17	+0.0
3,799,183	-		DZA65_RS17635	0.17	+0.5
3,799,183	-		DZA65_RS17635	0.17	-0.4
3,799,183	-		DZA65_RS17635	0.17	-0.6
3,799,183	-		DZA65_RS17635	0.17	+0.3
3,799,183	-		DZA65_RS17635	0.17	-0.4
3,799,183	-		DZA65_RS17635	0.17	-0.2
3,799,183	-		DZA65_RS17635	0.17	+0.5
3,799,183	-		DZA65_RS17635	0.17	+0.9
3,799,183	-		DZA65_RS17635	0.17	-0.1
3,799,183	-		DZA65_RS17635	0.17	-0.5
3,799,183	-		DZA65_RS17635	0.17	-0.1
3,799,183	-		DZA65_RS17635	0.17	-0.0
3,799,183	-		DZA65_RS17635	0.17	+0.4
3,799,183	-		DZA65_RS17635	0.17	-0.3
3,799,183	-		DZA65_RS17635	0.17	-1.7
3,799,183	-		DZA65_RS17635	0.17	-0.2
3,799,183	-		DZA65_RS17635	0.17	-0.6
3,799,183	-				+1.5
3,799,214	-		DZA65_RS17635	0.20	-0.3
3,799,294	+		DZA65_RS17635	0.27	+0.7
3,799,296	+		DZA65_RS17635	0.27	-0.1
3,799,296	+		DZA65_RS17635	0.27	+1.1
3,799,296	+		DZA65_RS17635	0.27	+1.1
3,799,296	+		DZA65_RS17635	0.27	-0.3
3,799,297	-		DZA65_RS17635	0.27	-1.7
3,799,297	-		DZA65_RS17635	0.27	+0.2
3,799,297	-		DZA65_RS17635	0.27	+0.2
3,799,297	-		DZA65_RS17635	0.27	+0.9
3,799,421	+		DZA65_RS17635	0.38	+0.3
3,799,422	-		DZA65_RS17635	0.38	-0.1
3,799,445	-		DZA65_RS17635	0.40	-1.4
3,799,471	-		DZA65_RS17635	0.43	-1.9
3,799,476	+		DZA65_RS17635	0.43	-0.2
3,799,508	+		DZA65_RS17635	0.46	+3.0
3,799,509	-		DZA65_RS17635	0.46	-0.3
3,799,514	+		DZA65_RS17635	0.46	+2.5
3,799,555	+		DZA65_RS17635	0.50	+1.7
3,799,559	-		DZA65_RS17635	0.50	+1.6
3,799,571	+		DZA65_RS17635	0.51	+0.4
3,799,574	+		DZA65_RS17635	0.52	+0.3
3,799,574	+		DZA65_RS17635	0.52	+0.2
3,799,578	+		DZA65_RS17635	0.52	-0.0
3,799,579	-		DZA65_RS17635	0.52	-0.0
3,799,589	-		DZA65_RS17635	0.53	-0.5
3,799,589	-		DZA65_RS17635	0.53	-0.1
3,799,591	+		DZA65_RS17635	0.53	-1.0
3,799,591	+		DZA65_RS17635	0.53	-0.4
3,799,597	+		DZA65_RS17635	0.54	+0.9
3,799,619	+		DZA65_RS17635	0.56	+0.3
3,799,639	+		DZA65_RS17635	0.58	-1.4
3,799,639	+		DZA65_RS17635	0.58	+0.9
3,799,655	-		DZA65_RS17635	0.59	-2.6
3,799,655	-		DZA65_RS17635	0.59	+0.9
3,799,686	+		DZA65_RS17635	0.62	+0.2
3,799,686	+		DZA65_RS17635	0.62	+0.3
3,799,725	+		DZA65_RS17635	0.65	-0.9
3,799,725	+		DZA65_RS17635	0.65	-0.4
3,799,726	-		DZA65_RS17635	0.65	-0.8
3,799,734	+		DZA65_RS17635	0.66	+0.2
3,799,734	+		DZA65_RS17635	0.66	+0.3
3,799,734	+		DZA65_RS17635	0.66	+1.5
3,799,735	-		DZA65_RS17635	0.66	+0.1
3,799,735	-		DZA65_RS17635	0.66	-0.3
3,799,770	+		DZA65_RS17635	0.69	-1.9
3,799,786	+		DZA65_RS17635	0.71	-0.9
3,799,801	+		DZA65_RS17635	0.72	-0.5
3,799,801	+		DZA65_RS17635	0.72	+1.1
3,799,841	+		DZA65_RS17635	0.76	+0.2
3,799,841	+		DZA65_RS17635	0.76	-1.4
3,799,842	-		DZA65_RS17635	0.76	-0.2
3,799,842	-		DZA65_RS17635	0.76	+0.9
3,799,927	+		DZA65_RS17635	0.83	+0.9
3,799,928	-		DZA65_RS17635	0.83	-0.7
3,799,929	+		DZA65_RS17635	0.83	+0.5
3,799,929	+		DZA65_RS17635	0.83	-0.1
3,799,930	-		DZA65_RS17635	0.84	+0.1
3,799,930	-		DZA65_RS17635	0.84	-0.3
3,799,930	-		DZA65_RS17635	0.84	-0.5
3,799,930	-		DZA65_RS17635	0.84	+1.0
3,799,960	+		DZA65_RS17635	0.86	-1.0
3,799,961	-		DZA65_RS17635	0.86	+1.0
3,799,962	+		DZA65_RS17635	0.86	+0.4
3,799,962	+		DZA65_RS17635	0.86	-1.9
3,799,963	-		DZA65_RS17635	0.87	+1.3
3,799,978	+		DZA65_RS17635	0.88	+0.0
3,799,978	+		DZA65_RS17635	0.88	-1.4
3,799,979	-		DZA65_RS17635	0.88	+0.6
3,799,979	-		DZA65_RS17635	0.88	+0.2
3,800,018	+				-0.9
3,800,018	+				-0.1
3,800,019	-				+0.7
3,800,019	-				-1.7
3,800,019	-				+0.5
3,800,022	+				-1.7
3,800,022	+				-0.6
3,800,022	+				-0.3
3,800,023	-				-0.1
3,800,050	+				+1.2
3,800,110	-				+0.1
3,800,110	-				+0.2
3,800,110	-				+0.8
3,800,110	-				+0.8
3,800,110	-				+0.8
3,800,154	+				-0.1
3,800,154	+				+0.3
3,800,231	+				-0.7
3,800,232	-				+0.2
3,800,236	+				+0.3
3,800,236	+				+0.4
3,800,236	+				-1.0
3,800,236	+				+0.1
3,800,248	+				+0.9
3,800,270	-				-0.5
3,800,343	+				+0.3
3,800,343	+				-0.4
3,800,343	+				+0.0
3,800,343	+				-2.1
3,800,343	+				-2.3
3,800,343	+				-0.1
3,800,343	+				-0.6
3,800,343	+				+0.4
3,800,343	+				-0.8
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3,800,344	-				-1.1
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3,800,344	-				-1.2
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3,801,105	-		DZA65_RS17640	0.76	+0.3
3,801,105	-		DZA65_RS17640	0.76	+0.0