Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17535

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,777,793	-				-0.5
3,777,807	-				-0.6
3,777,855	+		DZA65_RS17530	0.13	-0.3
3,777,855	+		DZA65_RS17530	0.13	-0.9
3,777,856	-		DZA65_RS17530	0.13	-0.7
3,777,907	+		DZA65_RS17530	0.20	-1.4
3,777,907	+		DZA65_RS17530	0.20	-0.4
3,777,918	+		DZA65_RS17530	0.22	-1.9
3,777,918	+		DZA65_RS17530	0.22	-0.9
3,777,918	+		DZA65_RS17530	0.22	+3.5
3,777,918	+		DZA65_RS17530	0.22	-2.2
3,777,918	+		DZA65_RS17530	0.22	+0.5
3,777,918	+		DZA65_RS17530	0.22	-0.7
3,777,918	+		DZA65_RS17530	0.22	+0.0
3,777,918	+		DZA65_RS17530	0.22	+0.5
3,777,918	+		DZA65_RS17530	0.22	+1.5
3,777,918	+		DZA65_RS17530	0.22	+1.5
3,777,919	-		DZA65_RS17530	0.22	-0.1
3,777,919	-		DZA65_RS17530	0.22	-0.1
3,777,919	-		DZA65_RS17530	0.22	+1.2
3,777,919	-		DZA65_RS17530	0.22	-0.3
3,777,919	-		DZA65_RS17530	0.22	+0.0
3,777,919	-		DZA65_RS17530	0.22	+0.8
3,777,919	-		DZA65_RS17530	0.22	+1.9
3,777,919	-		DZA65_RS17530	0.22	+1.0
3,777,919	-		DZA65_RS17530	0.22	+1.5
3,777,919	-		DZA65_RS17530	0.22	+0.3
3,777,919	-		DZA65_RS17530	0.22	+0.5
3,777,919	-		DZA65_RS17530	0.22	+1.1
3,777,919	-		DZA65_RS17530	0.22	+1.1
3,777,920	+		DZA65_RS17530	0.22	+1.4
3,777,920	+		DZA65_RS17530	0.22	-0.9
3,777,920	+		DZA65_RS17530	0.22	+0.7
3,777,920	+		DZA65_RS17530	0.22	+0.3
3,777,920	+		DZA65_RS17530	0.22	+0.4
3,777,920	+		DZA65_RS17530	0.22	+1.0
3,777,921	-		DZA65_RS17530	0.22	-0.8
3,777,921	-		DZA65_RS17530	0.22	-0.4
3,777,921	-		DZA65_RS17530	0.22	-0.1
3,777,921	-		DZA65_RS17530	0.22	+0.3
3,777,922	+		DZA65_RS17530	0.22	-0.3
3,777,922	+		DZA65_RS17530	0.22	-1.8
3,777,922	+		DZA65_RS17530	0.22	+0.0
3,777,922	+		DZA65_RS17530	0.22	-2.6
3,777,923	-		DZA65_RS17530	0.22	+0.7
3,777,923	-		DZA65_RS17530	0.22	+0.6
3,777,923	-		DZA65_RS17530	0.22	-0.2
3,777,930	-		DZA65_RS17530	0.23	-0.4
3,778,064	-		DZA65_RS17530	0.43	+0.4
3,778,064	-		DZA65_RS17530	0.43	-0.1
3,778,075	-		DZA65_RS17530	0.44	+1.1
3,778,165	+		DZA65_RS17530	0.57	+0.9
3,778,166	-		DZA65_RS17530	0.57	+0.4
3,778,166	-		DZA65_RS17530	0.57	-1.3
3,778,166	-		DZA65_RS17530	0.57	+0.9
3,778,166	-		DZA65_RS17530	0.57	+0.9
3,778,169	+		DZA65_RS17530	0.58	+1.3
3,778,169	+		DZA65_RS17530	0.58	-0.7
3,778,170	-		DZA65_RS17530	0.58	-0.1
3,778,231	+		DZA65_RS17530	0.67	+0.0
3,778,231	+		DZA65_RS17530	0.67	+1.5
3,778,231	+		DZA65_RS17530	0.67	-0.5
3,778,231	+		DZA65_RS17530	0.67	-0.1
3,778,232	-		DZA65_RS17530	0.67	-0.5
3,778,232	-		DZA65_RS17530	0.67	-0.4
3,778,234	+		DZA65_RS17530	0.67	-0.2
3,778,234	+		DZA65_RS17530	0.67	+0.2
3,778,234	+		DZA65_RS17530	0.67	-0.7
3,778,235	-		DZA65_RS17530	0.67	-0.6
3,778,235	-		DZA65_RS17530	0.67	+0.2
3,778,235	-		DZA65_RS17530	0.67	-2.6
3,778,235	-		DZA65_RS17530	0.67	+0.6
3,778,235	-		DZA65_RS17530	0.67	-1.4
3,778,237	+		DZA65_RS17530	0.68	+0.1
3,778,238	-				-1.1
3,778,247	+		DZA65_RS17530	0.69	+2.1
3,778,247	+		DZA65_RS17530	0.69	-1.3
3,778,248	-		DZA65_RS17530	0.69	+0.1
3,778,277	-		DZA65_RS17530	0.73	+0.2
3,778,317	-		DZA65_RS17530	0.79	-0.4
3,778,325	+		DZA65_RS17530	0.80	+1.0
3,778,326	-		DZA65_RS17530	0.81	-0.3
3,778,326	-		DZA65_RS17530	0.81	-1.4
3,778,326	-		DZA65_RS17530	0.81	+0.7
3,778,355	+		DZA65_RS17530	0.85	+0.6
3,778,355	+		DZA65_RS17530	0.85	-0.2
3,778,355	+		DZA65_RS17530	0.85	+1.9
3,778,355	+		DZA65_RS17530	0.85	-1.9
3,778,355	+		DZA65_RS17530	0.85	+0.9
3,778,355	+		DZA65_RS17530	0.85	-1.3
3,778,355	+		DZA65_RS17530	0.85	-0.4
3,778,356	-		DZA65_RS17530	0.85	+0.0
3,778,356	-		DZA65_RS17530	0.85	+0.5
3,778,356	-		DZA65_RS17530	0.85	+1.0
3,778,356	-		DZA65_RS17530	0.85	+1.9
3,778,452	+				-1.4
3,778,452	+				-0.1
3,778,460	+				+0.7
3,778,460	+				-0.9
3,778,460	+				-0.5
3,778,460	+				-1.4
3,778,460	+				-0.8
3,778,460	+				-0.7
3,778,461	-				-0.1
3,778,461	-				-0.6
3,778,461	-				-0.4
3,778,461	-				+0.3
3,778,470	+				+0.2
3,778,471	-				-0.5
3,778,471	-				-0.1
3,778,478	-				-0.1
3,778,478	-				+3.2
3,778,511	+				+0.3
3,778,553	+				-0.1
3,778,586	-				-0.1
3,778,598	+				+0.9
3,778,598	+				+0.2
3,778,598	+				+0.7
3,778,598	+				-1.1
3,778,598	+				+0.3
3,778,598	+				-0.1
3,778,598	+				+0.2
3,778,598	+				+1.6
3,778,599	-				-0.1
3,778,599	-				-0.1
3,778,599	-				-2.3
3,778,599	-				-0.1
3,778,599	-				-0.1
3,778,642	+				+0.6
3,778,642	+				+0.6
3,778,642	+				+0.7
3,778,643	-				-0.7
3,778,662	-				+0.7
3,778,713	+				-0.1
3,778,714	-				+1.2
3,778,866	+		DZA65_RS17535	0.12	-0.4
3,778,930	+		DZA65_RS17535	0.18	-1.1
3,778,930	+		DZA65_RS17535	0.18	-2.3
3,778,930	+		DZA65_RS17535	0.18	-1.1
3,778,930	+				+0.9
3,778,930	+		DZA65_RS17535	0.18	-0.6
3,778,931	-		DZA65_RS17535	0.18	+0.3
3,778,931	-		DZA65_RS17535	0.18	-0.0
3,778,932	+		DZA65_RS17535	0.19	-0.1
3,778,933	-		DZA65_RS17535	0.19	-1.3
3,778,933	-		DZA65_RS17535	0.19	+0.1
3,778,933	-		DZA65_RS17535	0.19	+0.6
3,778,933	-		DZA65_RS17535	0.19	+0.6
3,779,210	-		DZA65_RS17535	0.46	+1.3
3,779,253	+		DZA65_RS17535	0.50	-0.4
3,779,273	+		DZA65_RS17535	0.52	-1.4
3,779,278	+		DZA65_RS17535	0.53	+1.0
3,779,278	+		DZA65_RS17535	0.53	+0.9
3,779,405	-		DZA65_RS17535	0.65	-1.4
3,779,410	+		DZA65_RS17535	0.66	+1.1
3,779,411	-		DZA65_RS17535	0.66	+0.6
3,779,503	+		DZA65_RS17535	0.75	+0.9
3,779,503	+		DZA65_RS17535	0.75	-1.2
3,779,504	-		DZA65_RS17535	0.75	+0.9
3,779,504	-		DZA65_RS17535	0.75	-0.6
3,779,504	-		DZA65_RS17535	0.75	-0.8
3,779,628	+		DZA65_RS17535	0.88	-0.4
3,779,628	+		DZA65_RS17535	0.88	-0.7
3,779,628	+		DZA65_RS17535	0.88	-0.6
3,779,628	+		DZA65_RS17535	0.88	-0.3
3,779,628	+		DZA65_RS17535	0.88	+0.3
3,779,629	-		DZA65_RS17535	0.88	-0.5
3,779,629	-		DZA65_RS17535	0.88	-0.8
3,779,629	-		DZA65_RS17535	0.88	-0.5
3,779,629	-		DZA65_RS17535	0.88	+0.5
3,779,693	+				-0.1
3,779,693	+				-0.1
3,779,694	-				-0.1
3,779,694	-				-0.3
3,779,708	+				-0.1
3,779,708	+				+0.2
3,779,708	+				-0.7
3,779,708	+				+0.4
3,779,709	-				-0.6
3,779,709	-				-1.3
3,779,711	+				+0.7
3,779,711	+				+0.2
3,779,711	+				-0.1
3,779,711	+				-2.6
3,779,711	+				+1.9
3,779,712	-				+0.4
3,779,712	-				-0.4
3,779,712	-				-0.2
3,779,712	-				+0.6
3,779,712	-				+0.3
3,779,712	-				+2.2
3,779,726	+				+0.9
3,779,726	+				+0.5
3,779,726	+				+0.1
3,779,726	+				-1.9
3,779,726	+				-0.7
3,779,726	+				-0.1
3,779,726	+				-0.9
3,779,726	+				-1.0
3,779,727	-				-0.7
3,779,727	-				-0.9
3,779,727	-				-0.8
3,779,727	-				+0.2
3,779,727	-				-0.1
3,779,727	-				+0.2
3,779,727	-				-0.5
3,779,727	-				+0.5
3,779,727	-				+0.5
3,779,727	-				-1.9
3,779,727	-				-1.4
3,779,727	-				-0.5
3,779,727	-				+0.2
3,779,752	+				+1.9
3,779,861	-		DZA65_RS17540	0.36	+0.6
3,779,908	+		DZA65_RS17540	0.59	+0.2
3,779,908	+		DZA65_RS17540	0.59	-1.7
3,779,908	+		DZA65_RS17540	0.59	+1.6
3,779,908	+		DZA65_RS17540	0.59	+1.7
3,779,908	+		DZA65_RS17540	0.59	+0.5
3,779,908	+		DZA65_RS17540	0.59	+0.5
3,779,908	+		DZA65_RS17540	0.59	-0.7
3,779,908	+		DZA65_RS17540	0.59	+0.5
3,779,908	+		DZA65_RS17540	0.59	-0.0
3,779,908	+		DZA65_RS17540	0.59	-0.6
3,779,908	+		DZA65_RS17540	0.59	-0.7
3,779,908	+		DZA65_RS17540	0.59	-0.5
3,779,908	+		DZA65_RS17540	0.59	+0.2
3,779,908	+		DZA65_RS17540	0.59	+0.6
3,779,909	-		DZA65_RS17540	0.60	+1.4
3,779,909	-		DZA65_RS17540	0.60	-1.8
3,779,909	-		DZA65_RS17540	0.60	-1.8
3,779,909	-		DZA65_RS17540	0.60	+0.9
3,779,909	-		DZA65_RS17540	0.60	+1.2
3,779,909	-		DZA65_RS17540	0.60	+0.9
3,779,909	-		DZA65_RS17540	0.60	-1.1
3,779,909	-		DZA65_RS17540	0.60	-0.1
3,779,909	-		DZA65_RS17540	0.60	-0.1
3,779,909	-		DZA65_RS17540	0.60	-0.2
3,779,909	-		DZA65_RS17540	0.60	-0.7
3,779,909	-		DZA65_RS17540	0.60	-0.4
3,779,909	-		DZA65_RS17540	0.60	+1.9
3,779,909	-		DZA65_RS17540	0.60	+0.6
3,779,909	-		DZA65_RS17540	0.60	-0.5
3,779,909	-		DZA65_RS17540	0.60	-0.1
3,779,909	-		DZA65_RS17540	0.60	-0.8
3,779,909	-		DZA65_RS17540	0.60	-0.9
3,779,909	-		DZA65_RS17540	0.60	-0.4
3,779,909	-		DZA65_RS17540	0.60	-1.3
3,779,909	-		DZA65_RS17540	0.60	-0.9
3,779,909	-				-0.1
3,779,909	-		DZA65_RS17540	0.60	-0.9
3,779,909	-		DZA65_RS17540	0.60	+0.5
3,779,909	-		DZA65_RS17540	0.60	-0.2
3,779,909	-		DZA65_RS17540	0.60	-0.5
3,779,912	+		DZA65_RS17540	0.61	+0.9
3,779,913	-		DZA65_RS17540	0.62	+0.6
3,779,913	-		DZA65_RS17540	0.62	-1.8
3,779,918	-		DZA65_RS17540	0.64	-0.7
3,779,932	-		DZA65_RS17540	0.71	+0.5
3,779,991	-				+1.0
3,779,991	-				+0.4
3,780,042	-				-0.5
3,780,076	+				-0.1
3,780,077	-				-0.7
3,780,077	-				-0.1
3,780,124	+				-0.4
3,780,124	+				-0.6
3,780,124	+				-0.1
3,780,124	+				+0.3
3,780,124	+				+0.2
3,780,124	+				+0.7
3,780,124	+				+0.2
3,780,124	+				-0.4
3,780,125	-				-1.0
3,780,125	-				+0.6
3,780,125	-				-1.1
3,780,125	-				+0.6
3,780,125	-				-2.4
3,780,125	-				-0.8
3,780,188	-				+0.9
3,780,195	+				-0.9
3,780,195	+				-2.0
3,780,195	+				-0.4
3,780,196	-				+0.2
3,780,196	-				-0.7
3,780,200	+				+1.2
3,780,200	+				+1.2
3,780,200	+				+0.9
3,780,200	+				+0.6
3,780,200	+				-0.1
3,780,200	+				-2.1
3,780,201	-				-0.3
3,780,201	-				-0.7
3,780,201	-				-0.7
3,780,201	-				-2.1
3,780,201	-				-1.2
3,780,201	-				-0.7
3,780,201	-				+1.0
3,780,201	-				-0.3
3,780,202	+				-0.4
3,780,202	+				+0.1
3,780,202	+				-0.6
3,780,202	+				+0.1
3,780,202	+				-0.8
3,780,202	+				+3.7
3,780,202	+				-1.9
3,780,202	+				-0.3
3,780,202	+				+0.5
3,780,203	-				-1.1
3,780,203	-				-1.9
3,780,203	-				+1.9
3,780,203	-				-0.8
3,780,203	-				-0.9
3,780,203	-				+0.2
3,780,203	-				-0.1
3,780,203	-				-1.1
3,780,203	-				-0.1
3,780,203	-				+0.7
3,780,231	+				+0.7
3,780,232	-				+0.4
3,780,239	+				-1.4
3,780,239	+				-0.1
3,780,239	+				-0.8
3,780,239	+				+0.6
3,780,239	+				-0.1
3,780,240	-				-1.1
3,780,240	-				-0.7
3,780,240	-				-1.8
3,780,240	-				+2.9
3,780,240	-				+1.7
3,780,244	+				+0.1
3,780,244	+				-1.6
3,780,244	+				-0.5
3,780,244	+				-0.1
3,780,244	+				+1.1
3,780,245	-				+1.6
3,780,245	-				+1.8
3,780,312	-		DZA65_RS17545	0.11	-0.6
3,780,337	+		DZA65_RS17545	0.12	-1.1
3,780,338	-		DZA65_RS17545	0.12	-0.0
3,780,362	+		DZA65_RS17545	0.13	+0.9
3,780,362	+		DZA65_RS17545	0.13	-0.7
3,780,363	-		DZA65_RS17545	0.13	-0.8
3,780,368	+		DZA65_RS17545	0.14	-1.9
3,780,404	+		DZA65_RS17545	0.15	-1.7
3,780,404	+		DZA65_RS17545	0.15	-0.8
3,780,404	+		DZA65_RS17545	0.15	+1.2
3,780,405	-		DZA65_RS17545	0.15	+0.9
3,780,442	+		DZA65_RS17545	0.17	+0.4
3,780,443	-		DZA65_RS17545	0.17	-0.5
3,780,450	-		DZA65_RS17545	0.17	+1.5
3,780,450	-		DZA65_RS17545	0.17	-0.1
3,780,450	-		DZA65_RS17545	0.17	+0.5
3,780,486	+		DZA65_RS17545	0.19	-2.1
3,780,487	-		DZA65_RS17545	0.19	+0.2
3,780,518	+		DZA65_RS17545	0.20	+0.2
3,780,519	-		DZA65_RS17545	0.21	-1.7
3,780,519	-		DZA65_RS17545	0.21	-1.3
3,780,574	+		DZA65_RS17545	0.23	+0.4
3,780,574	+		DZA65_RS17545	0.23	-0.1
3,780,686	+		DZA65_RS17545	0.28	+1.6
3,780,687	-		DZA65_RS17545	0.28	+0.3
3,780,687	-		DZA65_RS17545	0.28	-0.3
3,780,733	-		DZA65_RS17545	0.30	+0.6