Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17225

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,716,156	+				+0.1
3,716,157	-				+0.1
3,716,157	-				-0.0
3,716,160	+				-1.1
3,716,160	+				+0.3
3,716,160	+				+0.7
3,716,160	+				+0.5
3,716,160	+				+0.9
3,716,160	+				-0.9
3,716,160	+				+0.6
3,716,160	+				+0.7
3,716,160	+				+0.9
3,716,160	+				+0.6
3,716,161	-				-2.0
3,716,161	-				-0.6
3,716,161	-				-1.3
3,716,161	-				-0.9
3,716,161	-				+0.9
3,716,161	-				-1.0
3,716,161	-				-1.7
3,716,165	+				+0.5
3,716,172	+				-0.5
3,716,172	+				+0.1
3,716,202	+		DZA65_RS17220	0.13	+0.4
3,716,202	+		DZA65_RS17220	0.13	-0.2
3,716,202	+		DZA65_RS17220	0.13	+0.3
3,716,202	+		DZA65_RS17220	0.13	+0.2
3,716,202	+		DZA65_RS17220	0.13	+0.6
3,716,202	+		DZA65_RS17220	0.13	+0.0
3,716,202	+		DZA65_RS17220	0.13	+1.5
3,716,203	-		DZA65_RS17220	0.13	-0.4
3,716,203	-		DZA65_RS17220	0.13	+1.1
3,716,203	-		DZA65_RS17220	0.13	-0.1
3,716,203	-		DZA65_RS17220	0.13	-0.1
3,716,203	-		DZA65_RS17220	0.13	+0.1
3,716,203	-		DZA65_RS17220	0.13	+0.5
3,716,203	-		DZA65_RS17220	0.13	-0.5
3,716,205	-		DZA65_RS17220	0.13	-0.7
3,716,211	+		DZA65_RS17220	0.14	+0.3
3,716,211	+		DZA65_RS17220	0.14	-2.5
3,716,211	+		DZA65_RS17220	0.14	-1.1
3,716,211	+		DZA65_RS17220	0.14	+0.3
3,716,211	+		DZA65_RS17220	0.14	-1.9
3,716,211	+		DZA65_RS17220	0.14	-0.5
3,716,212	-		DZA65_RS17220	0.14	+1.6
3,716,212	-		DZA65_RS17220	0.14	+2.0
3,716,212	-		DZA65_RS17220	0.14	+0.5
3,716,226	+		DZA65_RS17220	0.16	+0.0
3,716,226	+		DZA65_RS17220	0.16	+0.7
3,716,226	+		DZA65_RS17220	0.16	+1.9
3,716,226	+		DZA65_RS17220	0.16	-0.4
3,716,226	+		DZA65_RS17220	0.16	-0.8
3,716,226	+		DZA65_RS17220	0.16	+1.4
3,716,226	+		DZA65_RS17220	0.16	+1.5
3,716,226	+		DZA65_RS17220	0.16	-1.2
3,716,226	+				+0.5
3,716,226	+		DZA65_RS17220	0.16	+1.4
3,716,227	-		DZA65_RS17220	0.16	-0.7
3,716,227	-		DZA65_RS17220	0.16	-0.9
3,716,227	-		DZA65_RS17220	0.16	+0.9
3,716,227	-		DZA65_RS17220	0.16	+1.2
3,716,227	-		DZA65_RS17220	0.16	+0.6
3,716,227	-		DZA65_RS17220	0.16	-0.7
3,716,227	-		DZA65_RS17220	0.16	+0.0
3,716,227	-		DZA65_RS17220	0.16	-1.6
3,716,227	-		DZA65_RS17220	0.16	+0.7
3,716,258	+		DZA65_RS17220	0.20	-1.1
3,716,294	+		DZA65_RS17220	0.24	+0.9
3,716,294	+		DZA65_RS17220	0.24	+0.1
3,716,378	+		DZA65_RS17220	0.35	-0.7
3,716,379	-		DZA65_RS17220	0.35	-0.0
3,716,438	+		DZA65_RS17220	0.43	+1.0
3,716,438	+		DZA65_RS17220	0.43	-2.5
3,716,438	+		DZA65_RS17220	0.43	-1.0
3,716,438	+		DZA65_RS17220	0.43	+1.2
3,716,439	-		DZA65_RS17220	0.43	-0.7
3,716,439	-		DZA65_RS17220	0.43	-1.1
3,716,439	-		DZA65_RS17220	0.43	-0.2
3,716,439	-		DZA65_RS17220	0.43	+1.3
3,716,439	-		DZA65_RS17220	0.43	-0.4
3,716,486	+		DZA65_RS17220	0.49	-0.2
3,716,486	+		DZA65_RS17220	0.49	+0.9
3,716,514	-		DZA65_RS17220	0.52	-1.0
3,716,514	-		DZA65_RS17220	0.52	-0.9
3,716,550	+		DZA65_RS17220	0.57	-0.6
3,716,698	-		DZA65_RS17220	0.75	+1.2
3,716,713	+		DZA65_RS17220	0.77	-2.1
3,716,714	-		DZA65_RS17220	0.77	-2.5
3,716,714	-		DZA65_RS17220	0.77	-0.4
3,716,778	+		DZA65_RS17220	0.85	-0.5
3,716,778	+		DZA65_RS17220	0.85	+0.0
3,716,779	-		DZA65_RS17220	0.85	+0.9
3,716,779	-		DZA65_RS17220	0.85	+0.2
3,716,779	-		DZA65_RS17220	0.85	+1.6
3,716,779	-		DZA65_RS17220	0.85	+0.7
3,716,828	+				+0.6
3,716,828	+				+0.3
3,716,828	+				+0.5
3,716,828	+				-1.3
3,716,829	-				+0.5
3,716,829	-				-0.6
3,716,829	-				+0.1
3,716,829	-				-0.3
3,716,829	-				-0.4
3,716,829	-				+0.3
3,716,829	-				+0.2
3,716,832	-				+0.7
3,716,865	+				-0.5
3,716,865	+				+0.5
3,716,866	-				+1.1
3,716,866	-				-0.3
3,716,866	-				+0.2
3,716,869	-				+0.3
3,716,869	-				-0.9
3,716,932	-				-1.3
3,716,932	-				-0.1
3,716,975	+				-0.1
3,716,975	+				-2.1
3,717,018	-				-0.5
3,717,037	+				-0.1
3,717,037	+				-1.3
3,717,038	-				+0.9
3,717,038	-				-1.7
3,717,038	-				-0.2
3,717,038	-				-1.7
3,717,038	-				+1.6
3,717,038	-				+0.1
3,717,041	+				-1.1
3,717,041	+				+1.6
3,717,179	+		DZA65_RS17225	0.29	+0.1
3,717,179	+		DZA65_RS17225	0.29	+1.3
3,717,179	+		DZA65_RS17225	0.29	+0.3
3,717,179	+		DZA65_RS17225	0.29	-0.6
3,717,179	+		DZA65_RS17225	0.29	+0.2
3,717,179	+		DZA65_RS17225	0.29	-0.1
3,717,179	+		DZA65_RS17225	0.29	+0.2
3,717,179	+		DZA65_RS17225	0.29	+1.1
3,717,180	-		DZA65_RS17225	0.30	-1.0
3,717,180	-		DZA65_RS17225	0.30	-1.1
3,717,180	-		DZA65_RS17225	0.30	-1.5
3,717,180	-		DZA65_RS17225	0.30	+0.6
3,717,180	-		DZA65_RS17225	0.30	+1.1
3,717,180	-		DZA65_RS17225	0.30	-0.0
3,717,180	-		DZA65_RS17225	0.30	-1.9
3,717,180	-		DZA65_RS17225	0.30	+0.9
3,717,180	-		DZA65_RS17225	0.30	-0.5
3,717,180	-		DZA65_RS17225	0.30	-0.5
3,717,180	-		DZA65_RS17225	0.30	-1.5
3,717,205	+		DZA65_RS17225	0.41	-1.0
3,717,237	+		DZA65_RS17225	0.54	-1.0
3,717,237	+		DZA65_RS17225	0.54	-0.8
3,717,237	+		DZA65_RS17225	0.54	-1.7
3,717,237	+		DZA65_RS17225	0.54	+1.5
3,717,238	-		DZA65_RS17225	0.55	-0.7
3,717,238	-		DZA65_RS17225	0.55	-0.4
3,717,238	-		DZA65_RS17225	0.55	+0.9
3,717,367	+				+0.8
3,717,367	+				-1.5
3,717,367	+				+0.5
3,717,367	+				+0.3
3,717,367	+				-0.9
3,717,367	+				+0.2
3,717,367	+				+0.3
3,717,368	-				+0.7
3,717,368	-				-1.2
3,717,368	-				+0.4
3,717,478	+		DZA65_RS17230	0.31	+0.4
3,717,478	+		DZA65_RS17230	0.31	+0.1
3,717,479	-		DZA65_RS17230	0.31	+1.5
3,717,499	+		DZA65_RS17230	0.36	-1.3
3,717,707	+		DZA65_RS17230	0.87	+0.4
3,717,707	+		DZA65_RS17230	0.87	+0.0
3,717,707	+		DZA65_RS17230	0.87	-0.5
3,717,707	+		DZA65_RS17230	0.87	-0.6
3,717,707	+				+1.5
3,717,707	+		DZA65_RS17230	0.87	+1.1
3,717,707	+		DZA65_RS17230	0.87	+0.3
3,717,707	+		DZA65_RS17230	0.87	-1.7
3,717,707	+		DZA65_RS17230	0.87	-0.1
3,717,707	+		DZA65_RS17230	0.87	+0.9
3,717,707	+		DZA65_RS17230	0.87	-0.2
3,717,707	+		DZA65_RS17230	0.87	-0.6
3,717,708	-		DZA65_RS17230	0.87	+0.9
3,717,708	-		DZA65_RS17230	0.87	-1.5
3,717,708	-		DZA65_RS17230	0.87	+0.3
3,717,708	-		DZA65_RS17230	0.87	+0.1
3,717,708	-		DZA65_RS17230	0.87	-1.2
3,717,708	-		DZA65_RS17230	0.87	+0.9
3,717,708	-		DZA65_RS17230	0.87	-0.9
3,717,708	-		DZA65_RS17230	0.87	+0.3
3,717,708	-		DZA65_RS17230	0.87	+0.4
3,717,716	+		DZA65_RS17230	0.89	-1.2
3,717,716	+		DZA65_RS17230	0.89	+0.1
3,717,716	+		DZA65_RS17230	0.89	-0.4
3,717,716	+		DZA65_RS17230	0.89	+1.5
3,717,717	-		DZA65_RS17230	0.89	-0.0
3,717,717	-		DZA65_RS17230	0.89	-0.0
3,717,717	-		DZA65_RS17230	0.89	-0.7
3,717,717	-		DZA65_RS17230	0.89	-0.1
3,717,717	-		DZA65_RS17230	0.89	+0.9
3,717,717	-		DZA65_RS17230	0.89	+0.1
3,717,787	-				-0.0
3,717,787	-				+0.9
3,717,816	+				-0.3
3,717,817	-				+1.2
3,717,817	-				-0.1
3,717,817	-				+0.8
3,717,817	-				+0.1
3,717,870	+				-2.1
3,717,871	-				+0.5
3,717,871	-				-3.3
3,717,871	-				-0.7
3,717,952	-				+1.0
3,717,952	-				-0.8
3,717,952	-				-1.7
3,717,952	-				+0.5
3,717,952	-				+1.5
3,717,952	-				-0.1
3,717,954	+		DZA65_RS17235	0.10	+0.1
3,717,954	+		DZA65_RS17235	0.10	+0.0
3,717,954	+		DZA65_RS17235	0.10	+0.3
3,717,954	+		DZA65_RS17235	0.10	-0.1
3,717,968	-		DZA65_RS17235	0.11	-0.4
3,717,968	-		DZA65_RS17235	0.11	+0.2
3,717,978	+		DZA65_RS17235	0.11	+1.0
3,717,978	+				+0.9
3,717,978	+		DZA65_RS17235	0.11	-1.5
3,717,979	-		DZA65_RS17235	0.11	+0.0
3,717,979	-		DZA65_RS17235	0.11	-0.7
3,718,066	-		DZA65_RS17235	0.15	+1.1
3,718,066	-		DZA65_RS17235	0.15	-0.5
3,718,066	-		DZA65_RS17235	0.15	+0.9
3,718,070	+		DZA65_RS17235	0.15	+0.7
3,718,070	+		DZA65_RS17235	0.15	-0.7
3,718,070	+		DZA65_RS17235	0.15	-0.9
3,718,070	+		DZA65_RS17235	0.15	-0.8
3,718,070	+		DZA65_RS17235	0.15	+0.0
3,718,070	+		DZA65_RS17235	0.15	-0.0
3,718,070	+		DZA65_RS17235	0.15	+0.4
3,718,070	+		DZA65_RS17235	0.15	-0.0
3,718,070	+		DZA65_RS17235	0.15	-0.6
3,718,070	+		DZA65_RS17235	0.15	+3.5
3,718,070	+		DZA65_RS17235	0.15	-0.2
3,718,070	+		DZA65_RS17235	0.15	+0.4
3,718,070	+		DZA65_RS17235	0.15	+1.9
3,718,070	+		DZA65_RS17235	0.15	+0.5
3,718,071	-		DZA65_RS17235	0.16	+0.1
3,718,071	-		DZA65_RS17235	0.16	+2.0
3,718,071	-		DZA65_RS17235	0.16	-0.1
3,718,071	-		DZA65_RS17235	0.16	+1.7
3,718,071	-		DZA65_RS17235	0.16	+1.5
3,718,071	-		DZA65_RS17235	0.16	-1.5
3,718,071	-		DZA65_RS17235	0.16	+0.7
3,718,071	-		DZA65_RS17235	0.16	+1.9
3,718,071	-		DZA65_RS17235	0.16	-0.1
3,718,071	-				-0.1
3,718,074	+		DZA65_RS17235	0.16	+1.2
3,718,074	+		DZA65_RS17235	0.16	-0.1
3,718,074	+		DZA65_RS17235	0.16	-1.9
3,718,074	+		DZA65_RS17235	0.16	+0.5
3,718,074	+		DZA65_RS17235	0.16	-1.9
3,718,074	+		DZA65_RS17235	0.16	+0.4
3,718,074	+		DZA65_RS17235	0.16	-0.5
3,718,074	+		DZA65_RS17235	0.16	-0.1
3,718,075	-		DZA65_RS17235	0.16	-0.7
3,718,075	-		DZA65_RS17235	0.16	-0.2
3,718,075	-		DZA65_RS17235	0.16	-0.1
3,718,075	-		DZA65_RS17235	0.16	+0.9
3,718,075	-		DZA65_RS17235	0.16	-0.5
3,718,104	+		DZA65_RS17235	0.17	+0.9
3,718,104	+				-0.7
3,718,105	-		DZA65_RS17235	0.17	-0.4
3,718,105	-		DZA65_RS17235	0.17	+0.9
3,718,116	+		DZA65_RS17235	0.18	+0.1
3,718,116	+		DZA65_RS17235	0.18	+0.2
3,718,116	+		DZA65_RS17235	0.18	-0.0
3,718,116	+		DZA65_RS17235	0.18	-1.3
3,718,299	-		DZA65_RS17235	0.26	-0.7
3,718,299	-		DZA65_RS17235	0.26	+0.5