Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16765

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,615,336	+				+1.1
3,615,337	-				-1.2
3,615,337	-				-0.7
3,615,440	+		DZA65_RS16760	0.15	-1.2
3,615,440	+		DZA65_RS16760	0.15	-0.8
3,615,441	-		DZA65_RS16760	0.15	+0.6
3,615,441	-		DZA65_RS16760	0.15	+1.5
3,615,441	-		DZA65_RS16760	0.15	+1.7
3,615,441	-		DZA65_RS16760	0.15	-0.5
3,615,548	+		DZA65_RS16760	0.25	+0.8
3,615,548	+		DZA65_RS16760	0.25	-0.8
3,615,548	+		DZA65_RS16760	0.25	-0.9
3,615,548	+		DZA65_RS16760	0.25	-0.2
3,615,548	+		DZA65_RS16760	0.25	-1.5
3,615,548	+		DZA65_RS16760	0.25	-1.3
3,615,548	+		DZA65_RS16760	0.25	+0.4
3,615,549	-		DZA65_RS16760	0.25	+0.6
3,615,549	-		DZA65_RS16760	0.25	+1.2
3,615,549	-		DZA65_RS16760	0.25	-0.1
3,615,549	-		DZA65_RS16760	0.25	+0.3
3,615,549	-		DZA65_RS16760	0.25	+0.4
3,615,549	-		DZA65_RS16760	0.25	-0.8
3,615,549	-		DZA65_RS16760	0.25	-0.1
3,615,549	-		DZA65_RS16760	0.25	-1.4
3,615,582	-		DZA65_RS16760	0.29	+0.0
3,615,719	+		DZA65_RS16760	0.42	+0.6
3,615,719	+		DZA65_RS16760	0.42	+0.4
3,615,719	+		DZA65_RS16760	0.42	+0.2
3,615,719	+		DZA65_RS16760	0.42	-0.8
3,615,719	+		DZA65_RS16760	0.42	+0.0
3,615,720	-		DZA65_RS16760	0.42	-1.0
3,615,720	-		DZA65_RS16760	0.42	+0.3
3,615,720	-		DZA65_RS16760	0.42	+0.7
3,615,720	-		DZA65_RS16760	0.42	+1.2
3,615,720	-		DZA65_RS16760	0.42	+0.4
3,615,720	-		DZA65_RS16760	0.42	-0.8
3,615,720	-		DZA65_RS16760	0.42	-0.2
3,615,720	-		DZA65_RS16760	0.42	+0.8
3,615,720	-		DZA65_RS16760	0.42	-0.7
3,615,720	-		DZA65_RS16760	0.42	+0.0
3,615,797	-		DZA65_RS16760	0.49	+0.6
3,615,888	+		DZA65_RS16760	0.58	-0.2
3,615,888	+		DZA65_RS16760	0.58	+0.8
3,615,888	+		DZA65_RS16760	0.58	+1.6
3,615,889	-		DZA65_RS16760	0.58	-2.2
3,615,889	-		DZA65_RS16760	0.58	+0.1
3,616,035	+		DZA65_RS16760	0.72	-0.6
3,616,035	+		DZA65_RS16760	0.72	-1.8
3,616,035	+		DZA65_RS16760	0.72	-1.2
3,616,035	+		DZA65_RS16760	0.72	-0.8
3,616,035	+		DZA65_RS16760	0.72	-0.8
3,616,035	+		DZA65_RS16760	0.72	+0.8
3,616,035	+				+0.1
3,616,035	+		DZA65_RS16760	0.72	-1.3
3,616,036	-		DZA65_RS16760	0.72	+1.0
3,616,036	-		DZA65_RS16760	0.72	+1.4
3,616,036	-		DZA65_RS16760	0.72	-0.4
3,616,036	-		DZA65_RS16760	0.72	-1.2
3,616,090	-		DZA65_RS16760	0.77	+0.8
3,616,238	+				+0.8
3,616,259	+				+0.2
3,616,290	+				+0.3
3,616,406	+		DZA65_RS16765	0.14	+0.2
3,616,406	+		DZA65_RS16765	0.14	+0.3
3,616,406	+		DZA65_RS16765	0.14	+0.8
3,616,406	+		DZA65_RS16765	0.14	+1.6
3,616,406	+		DZA65_RS16765	0.14	+0.7
3,616,406	+		DZA65_RS16765	0.14	+1.0
3,616,406	+		DZA65_RS16765	0.14	-0.2
3,616,406	+		DZA65_RS16765	0.14	-0.8
3,616,407	-		DZA65_RS16765	0.14	-0.2
3,616,452	+		DZA65_RS16765	0.21	-0.8
3,616,452	+		DZA65_RS16765	0.21	+1.9
3,616,453	-		DZA65_RS16765	0.21	+0.1
3,616,502	+		DZA65_RS16765	0.28	+0.9
3,616,502	+		DZA65_RS16765	0.28	+0.5
3,616,502	+		DZA65_RS16765	0.28	-0.2
3,616,502	+		DZA65_RS16765	0.28	-0.3
3,616,502	+		DZA65_RS16765	0.28	-0.9
3,616,502	+		DZA65_RS16765	0.28	+0.2
3,616,502	+		DZA65_RS16765	0.28	-0.4
3,616,503	-		DZA65_RS16765	0.28	+0.1
3,616,503	-		DZA65_RS16765	0.28	+1.2
3,616,503	-		DZA65_RS16765	0.28	+0.7
3,616,503	-				+0.8
3,616,509	+		DZA65_RS16765	0.29	-0.1
3,616,509	+		DZA65_RS16765	0.29	-0.6
3,616,509	+		DZA65_RS16765	0.29	+0.6
3,616,509	+		DZA65_RS16765	0.29	+1.4
3,616,509	+		DZA65_RS16765	0.29	-0.2
3,616,510	-		DZA65_RS16765	0.29	+0.8
3,616,510	-		DZA65_RS16765	0.29	+0.0
3,616,510	-		DZA65_RS16765	0.29	+1.5
3,616,510	-		DZA65_RS16765	0.29	+0.7
3,616,510	-		DZA65_RS16765	0.29	-0.5
3,616,510	-		DZA65_RS16765	0.29	-0.8
3,616,520	+		DZA65_RS16765	0.31	-0.5
3,616,520	+		DZA65_RS16765	0.31	-0.4
3,616,520	+		DZA65_RS16765	0.31	+0.5
3,616,520	+		DZA65_RS16765	0.31	+1.1
3,616,520	+		DZA65_RS16765	0.31	+0.2
3,616,521	-		DZA65_RS16765	0.31	+1.8
3,616,521	-		DZA65_RS16765	0.31	+1.5
3,616,521	-		DZA65_RS16765	0.31	-0.1
3,616,532	+		DZA65_RS16765	0.33	-0.4
3,616,532	+		DZA65_RS16765	0.33	+1.6
3,616,532	+		DZA65_RS16765	0.33	-0.5
3,616,532	+		DZA65_RS16765	0.33	+0.3
3,616,532	+		DZA65_RS16765	0.33	+1.2
3,616,532	+		DZA65_RS16765	0.33	-0.2
3,616,532	+		DZA65_RS16765	0.33	+0.2
3,616,533	-		DZA65_RS16765	0.33	-0.8
3,616,533	-		DZA65_RS16765	0.33	-1.4
3,616,533	-		DZA65_RS16765	0.33	-0.2
3,616,588	+		DZA65_RS16765	0.41	+0.2
3,616,588	+		DZA65_RS16765	0.41	+0.2
3,616,589	-		DZA65_RS16765	0.41	-0.3
3,616,589	-		DZA65_RS16765	0.41	-2.8
3,616,631	+		DZA65_RS16765	0.48	-1.2
3,616,632	-		DZA65_RS16765	0.48	+0.5
3,616,632	-		DZA65_RS16765	0.48	+0.3
3,616,652	+		DZA65_RS16765	0.51	-2.6
3,616,653	-		DZA65_RS16765	0.51	+1.5
3,616,653	-		DZA65_RS16765	0.51	+1.2
3,616,691	+		DZA65_RS16765	0.57	+1.6
3,616,692	-		DZA65_RS16765	0.57	+0.7
3,616,776	-		DZA65_RS16765	0.70	+0.7
3,616,776	-		DZA65_RS16765	0.70	-0.5
3,616,794	+		DZA65_RS16765	0.72	-0.3
3,616,794	+		DZA65_RS16765	0.72	-0.4
3,616,795	-		DZA65_RS16765	0.72	-1.2
3,616,806	+		DZA65_RS16765	0.74	+1.2
3,616,806	+		DZA65_RS16765	0.74	+0.2
3,616,806	+		DZA65_RS16765	0.74	+1.6
3,616,807	-		DZA65_RS16765	0.74	+2.6
3,616,873	-		DZA65_RS16765	0.84	+1.1
3,616,937	-				-0.6
3,616,937	-				+0.2
3,616,966	-				+0.2
3,616,967	+				+1.2
3,616,967	+				+0.1
3,616,968	-				-0.9
3,617,017	+				+1.1
3,617,017	+				-0.8
3,617,017	+				+1.3
3,617,018	-				+0.5
3,617,018	-				+0.7
3,617,020	+				-0.2
3,617,020	+				+0.6
3,617,033	+				-1.5
3,617,034	-				-0.1
3,617,050	-				-1.0
3,617,052	+				-0.4
3,617,053	-				+0.2
3,617,068	-				+0.4
3,617,085	-				-0.2
3,617,085	-				-0.4
3,617,085	-				-0.2
3,617,158	+				-0.4
3,617,159	-				+0.8
3,617,159	-				-0.2
3,617,270	+		DZA65_RS16770	0.17	-0.3
3,617,270	+		DZA65_RS16770	0.17	-1.5
3,617,270	+		DZA65_RS16770	0.17	+0.3
3,617,271	-		DZA65_RS16770	0.17	+0.5
3,617,271	-		DZA65_RS16770	0.17	-1.2
3,617,271	-		DZA65_RS16770	0.17	+0.1
3,617,271	-		DZA65_RS16770	0.17	+1.1
3,617,316	+		DZA65_RS16770	0.21	-2.0
3,617,316	+		DZA65_RS16770	0.21	+0.7
3,617,317	-		DZA65_RS16770	0.21	+0.6
3,617,317	-		DZA65_RS16770	0.21	-1.2
3,617,333	+		DZA65_RS16770	0.23	+0.4
3,617,333	+		DZA65_RS16770	0.23	+1.4
3,617,530	+		DZA65_RS16770	0.40	+0.2
3,617,531	-		DZA65_RS16770	0.40	-1.8
3,617,531	-		DZA65_RS16770	0.40	-0.6
3,617,548	+		DZA65_RS16770	0.42	-0.6
3,617,548	+		DZA65_RS16770	0.42	+0.7
3,617,549	-		DZA65_RS16770	0.42	-2.2
3,617,551	+		DZA65_RS16770	0.42	-0.5
3,617,551	+		DZA65_RS16770	0.42	-1.6
3,617,552	-		DZA65_RS16770	0.42	-0.2
3,617,552	-		DZA65_RS16770	0.42	-0.7
3,617,700	-		DZA65_RS16770	0.55	+0.9