Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14555

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,169,133	+				+0.7
3,169,133	+				-0.3
3,169,180	+		DZA65_RS14550	0.12	-0.7
3,169,180	+		DZA65_RS14550	0.12	+0.2
3,169,181	-		DZA65_RS14550	0.12	+0.4
3,169,340	-		DZA65_RS14550	0.29	-1.1
3,169,438	+		DZA65_RS14550	0.39	-1.9
3,169,439	-		DZA65_RS14550	0.39	-0.8
3,169,465	+		DZA65_RS14550	0.42	-0.1
3,169,465	+		DZA65_RS14550	0.42	+1.3
3,169,466	-		DZA65_RS14550	0.42	-0.1
3,169,466	-		DZA65_RS14550	0.42	-0.3
3,169,466	-		DZA65_RS14550	0.42	-0.9
3,169,466	-		DZA65_RS14550	0.42	-1.9
3,169,498	+		DZA65_RS14550	0.46	-1.1
3,169,499	-		DZA65_RS14550	0.46	-0.9
3,169,522	+		DZA65_RS14550	0.48	+0.9
3,169,592	+		DZA65_RS14550	0.56	+0.7
3,169,592	+		DZA65_RS14550	0.56	-0.0
3,169,592	+		DZA65_RS14550	0.56	+0.2
3,169,592	+		DZA65_RS14550	0.56	+0.2
3,169,593	-		DZA65_RS14550	0.56	+0.5
3,169,603	-		DZA65_RS14550	0.57	+0.3
3,169,631	-		DZA65_RS14550	0.60	-1.9
3,169,671	+		DZA65_RS14550	0.64	+1.8
3,169,671	+		DZA65_RS14550	0.64	+0.3
3,169,671	+		DZA65_RS14550	0.64	+1.3
3,169,672	-		DZA65_RS14550	0.64	-0.5
3,169,672	-		DZA65_RS14550	0.64	+0.0
3,169,672	-		DZA65_RS14550	0.64	+0.7
3,169,672	-		DZA65_RS14550	0.64	+0.7
3,169,672	-		DZA65_RS14550	0.64	-0.1
3,169,698	+		DZA65_RS14550	0.67	-0.0
3,169,698	+		DZA65_RS14550	0.67	-2.3
3,169,698	+		DZA65_RS14550	0.67	+0.6
3,169,698	+		DZA65_RS14550	0.67	+1.1
3,169,699	-		DZA65_RS14550	0.67	+0.3
3,169,699	-		DZA65_RS14550	0.67	-0.3
3,169,699	-		DZA65_RS14550	0.67	-1.3
3,169,699	-		DZA65_RS14550	0.67	+0.5
3,169,702	+		DZA65_RS14550	0.68	-0.0
3,169,703	-		DZA65_RS14550	0.68	-1.0
3,169,741	+		DZA65_RS14550	0.72	+1.2
3,169,741	+		DZA65_RS14550	0.72	-0.3
3,169,741	+		DZA65_RS14550	0.72	-0.7
3,169,742	-		DZA65_RS14550	0.72	-0.9
3,169,742	-		DZA65_RS14550	0.72	-2.0
3,169,742	-		DZA65_RS14550	0.72	+0.4
3,169,742	-		DZA65_RS14550	0.72	-0.0
3,169,742	-		DZA65_RS14550	0.72	-0.2
3,169,743	+		DZA65_RS14550	0.72	+0.4
3,169,743	+		DZA65_RS14550	0.72	-2.3
3,169,743	+		DZA65_RS14550	0.72	+1.7
3,169,743	+		DZA65_RS14550	0.72	+1.0
3,169,743	+		DZA65_RS14550	0.72	+0.1
3,169,744	-		DZA65_RS14550	0.72	+0.7
3,169,744	-		DZA65_RS14550	0.72	+0.3
3,169,744	-		DZA65_RS14550	0.72	+0.2
3,169,744	-		DZA65_RS14550	0.72	+0.3
3,169,744	-		DZA65_RS14550	0.72	-0.9
3,169,744	-		DZA65_RS14550	0.72	-0.5
3,169,744	-		DZA65_RS14550	0.72	-0.1
3,169,744	-		DZA65_RS14550	0.72	-0.9
3,169,759	+		DZA65_RS14550	0.74	-0.9
3,169,761	+		DZA65_RS14550	0.74	-0.8
3,169,761	+		DZA65_RS14550	0.74	+1.1
3,169,761	+		DZA65_RS14550	0.74	-0.9
3,169,761	+		DZA65_RS14550	0.74	-0.5
3,169,761	+		DZA65_RS14550	0.74	-0.9
3,169,761	+		DZA65_RS14550	0.74	+0.2
3,169,761	+		DZA65_RS14550	0.74	+0.3
3,169,761	+		DZA65_RS14550	0.74	+0.3
3,169,761	+		DZA65_RS14550	0.74	-0.2
3,169,761	+		DZA65_RS14550	0.74	+2.4
3,169,761	+		DZA65_RS14550	0.74	-2.7
3,169,761	+		DZA65_RS14550	0.74	-0.6
3,169,761	+		DZA65_RS14550	0.74	+0.2
3,169,761	+		DZA65_RS14550	0.74	+1.0
3,169,761	+		DZA65_RS14550	0.74	-1.3
3,169,761	+		DZA65_RS14550	0.74	-0.3
3,169,761	+		DZA65_RS14550	0.74	-0.7
3,169,761	+		DZA65_RS14550	0.74	-0.6
3,169,761	+		DZA65_RS14550	0.74	-1.1
3,169,762	-		DZA65_RS14550	0.74	-0.8
3,169,762	-		DZA65_RS14550	0.74	-1.2
3,169,762	-		DZA65_RS14550	0.74	-0.2
3,169,762	-		DZA65_RS14550	0.74	+0.3
3,169,762	-		DZA65_RS14550	0.74	+0.2
3,169,762	-		DZA65_RS14550	0.74	-0.1
3,169,762	-		DZA65_RS14550	0.74	-2.9
3,169,762	-				-0.3
3,169,762	-		DZA65_RS14550	0.74	+0.9
3,169,762	-		DZA65_RS14550	0.74	-0.7
3,169,762	-		DZA65_RS14550	0.74	-0.7
3,169,762	-		DZA65_RS14550	0.74	+0.3
3,169,762	-		DZA65_RS14550	0.74	-0.1
3,169,762	-		DZA65_RS14550	0.74	-0.1
3,169,762	-		DZA65_RS14550	0.74	-0.0
3,169,762	-		DZA65_RS14550	0.74	-1.7
3,169,762	-		DZA65_RS14550	0.74	-2.3
3,169,762	-		DZA65_RS14550	0.74	+1.7
3,169,762	-		DZA65_RS14550	0.74	-1.9
3,169,762	-		DZA65_RS14550	0.74	+0.1
3,169,762	-		DZA65_RS14550	0.74	+0.8
3,169,762	-		DZA65_RS14550	0.74	+0.7
3,169,762	-		DZA65_RS14550	0.74	-1.9
3,169,765	+		DZA65_RS14550	0.74	+1.0
3,169,765	+		DZA65_RS14550	0.74	-0.7
3,169,765	+		DZA65_RS14550	0.74	+0.4
3,169,765	+		DZA65_RS14550	0.74	+0.7
3,169,765	+		DZA65_RS14550	0.74	+0.5
3,169,766	-		DZA65_RS14550	0.75	+0.2
3,169,766	-		DZA65_RS14550	0.75	-0.9
3,169,766	-		DZA65_RS14550	0.75	+0.4
3,169,766	-		DZA65_RS14550	0.75	+0.9
3,169,766	-		DZA65_RS14550	0.75	+0.7
3,169,800	-		DZA65_RS14550	0.78	-2.3
3,169,838	-		DZA65_RS14550	0.82	+0.5
3,169,877	-		DZA65_RS14550	0.86	-1.0
3,169,877	-		DZA65_RS14550	0.86	+1.0
3,169,877	-		DZA65_RS14550	0.86	-0.7
3,169,885	-		DZA65_RS14550	0.87	+0.6
3,169,906	+		DZA65_RS14550	0.90	+1.3
3,169,906	+		DZA65_RS14550	0.90	-0.1
3,169,907	-		DZA65_RS14550	0.90	+0.1
3,169,907	-		DZA65_RS14550	0.90	+0.4
3,170,051	-				+0.2
3,170,051	-				+0.3
3,170,053	-				-1.3
3,170,114	+				+0.7
3,170,124	-				-0.2
3,170,124	-				+1.7
3,170,170	+				+0.3
3,170,170	+				+0.5
3,170,170	+				-0.1
3,170,170	+				+0.7
3,170,171	-				+1.7
3,170,171	-				-0.3
3,170,171	-				-0.3
3,170,184	+				-1.6
3,170,185	-				-0.4
3,170,238	-		DZA65_RS14555	0.13	+1.8
3,170,238	-		DZA65_RS14555	0.13	-3.0
3,170,282	+		DZA65_RS14555	0.17	-0.4
3,170,283	-		DZA65_RS14555	0.17	+0.2
3,170,344	+		DZA65_RS14555	0.24	-1.6
3,170,369	+		DZA65_RS14555	0.27	+0.5
3,170,370	-		DZA65_RS14555	0.27	+0.9
3,170,393	+		DZA65_RS14555	0.30	-0.1
3,170,447	+		DZA65_RS14555	0.36	-0.3
3,170,447	+		DZA65_RS14555	0.36	+0.7
3,170,447	+		DZA65_RS14555	0.36	+0.7
3,170,447	+		DZA65_RS14555	0.36	+1.5
3,170,447	+		DZA65_RS14555	0.36	+0.3
3,170,448	-		DZA65_RS14555	0.36	-1.3
3,170,448	-		DZA65_RS14555	0.36	-1.3
3,170,448	-		DZA65_RS14555	0.36	+0.4
3,170,448	-		DZA65_RS14555	0.36	+1.7
3,170,448	-		DZA65_RS14555	0.36	+0.4
3,170,465	+		DZA65_RS14555	0.38	+1.1
3,170,466	-		DZA65_RS14555	0.38	+0.3
3,170,469	+		DZA65_RS14555	0.38	-1.0
3,170,470	-		DZA65_RS14555	0.38	+0.7
3,170,470	-		DZA65_RS14555	0.38	+0.3
3,170,531	+		DZA65_RS14555	0.45	-1.9
3,170,531	+		DZA65_RS14555	0.45	-0.0
3,170,549	+		DZA65_RS14555	0.47	-0.5
3,170,549	+		DZA65_RS14555	0.47	-1.3
3,170,550	-		DZA65_RS14555	0.47	-0.8
3,170,643	+		DZA65_RS14555	0.57	+1.2
3,170,643	+		DZA65_RS14555	0.57	+0.7
3,170,643	+		DZA65_RS14555	0.57	-1.1
3,170,644	-		DZA65_RS14555	0.57	-0.5
3,170,647	+		DZA65_RS14555	0.58	+0.9
3,170,648	-		DZA65_RS14555	0.58	-0.6
3,170,648	-		DZA65_RS14555	0.58	+0.4
3,170,648	-		DZA65_RS14555	0.58	-2.9
3,170,648	-		DZA65_RS14555	0.58	-0.1
3,170,648	-		DZA65_RS14555	0.58	+1.0
3,170,683	+		DZA65_RS14555	0.61	+0.9
3,170,683	+		DZA65_RS14555	0.61	+0.6
3,170,699	+		DZA65_RS14555	0.63	+1.5
3,170,699	+		DZA65_RS14555	0.63	-0.2
3,170,699	+		DZA65_RS14555	0.63	+0.2
3,170,700	-		DZA65_RS14555	0.63	+0.1
3,170,700	-		DZA65_RS14555	0.63	-1.9
3,170,700	-		DZA65_RS14555	0.63	-0.4
3,170,700	-		DZA65_RS14555	0.63	+1.3
3,170,700	-		DZA65_RS14555	0.63	-0.3
3,170,766	+		DZA65_RS14555	0.71	-0.6
3,170,767	-		DZA65_RS14555	0.71	+1.4
3,170,837	+		DZA65_RS14555	0.78	+1.7
3,170,856	+		DZA65_RS14555	0.81	+2.3
3,170,857	-		DZA65_RS14555	0.81	+1.0
3,170,857	-		DZA65_RS14555	0.81	+0.7
3,170,857	-		DZA65_RS14555	0.81	-1.9
3,170,886	-		DZA65_RS14555	0.84	+0.5
3,170,894	-		DZA65_RS14555	0.85	+1.9
3,170,910	+		DZA65_RS14555	0.86	-0.6
3,170,911	-		DZA65_RS14555	0.87	+0.9
3,170,930	+		DZA65_RS14555	0.89	-0.1
3,170,930	+		DZA65_RS14555	0.89	+0.9
3,170,930	+		DZA65_RS14555	0.89	+0.4
3,170,930	+		DZA65_RS14555	0.89	-0.5
3,170,931	-		DZA65_RS14555	0.89	+0.9
3,170,943	+				-1.4
3,170,944	-				+0.4
3,170,952	-				-0.8
3,170,962	+				+0.9
3,170,962	+				-1.1
3,170,963	-				+0.9
3,170,984	+				+0.2
3,170,984	+				+0.5
3,170,985	-				-0.5
3,170,985	-				-1.3
3,170,985	-				-0.5
3,170,986	+				-0.6
3,170,986	+				-1.5
3,170,986	+				-0.5
3,170,986	+				+0.1
3,170,987	-				+0.0
3,171,030	+				-0.2
3,171,030	+				-0.5
3,171,031	-				+0.5
3,171,053	+				+0.3
3,171,053	+				-1.5
3,171,053	+				-0.6
3,171,053	+				-0.6
3,171,054	-				+0.3
3,171,054	-				+0.3
3,171,054	-				-0.2
3,171,054	-				-1.3
3,171,056	+				+1.3
3,171,056	+				-0.1
3,171,057	-				-0.2
3,171,057	-				+1.9
3,171,139	+				+0.7
3,171,139	+				-0.9
3,171,139	+				-0.9
3,171,139	+				+0.8
3,171,139	+				-0.1
3,171,139	+				+0.1
3,171,139	+				+0.7
3,171,139	+				+0.7
3,171,139	+				+0.5
3,171,139	+				-1.1
3,171,140	-				+0.3
3,171,140	-				+1.1
3,171,140	-				-1.3
3,171,140	-				-0.1
3,171,140	-				-1.1
3,171,140	-				+0.7
3,171,140	-				+0.3
3,171,161	+				+1.2
3,171,162	-				-0.4
3,171,164	+				-0.4
3,171,164	+				+0.2
3,171,164	+				-0.2
3,171,164	+				-0.1
3,171,165	-				-0.7
3,171,178	+				+0.2
3,171,179	-				-0.3
3,171,185	+				+0.6
3,171,185	+				-2.1
3,171,186	-				-1.5
3,171,186	-				+0.7
3,171,190	-				+0.7
3,171,190	-				-0.2
3,171,202	+				-0.5
3,171,203	-				-0.7
3,171,235	+				-0.7
3,171,235	+				-0.9
3,171,236	-				+0.3
3,171,236	-				+1.1
3,171,259	+				-1.2
3,171,308	+				-0.9
3,171,324	+				-0.6
3,171,324	+				+0.0
3,171,324	+				+0.3
3,171,325	-				-0.2
3,171,325	-				+0.1
3,171,343	-				-0.6
3,171,343	-				+0.7
3,171,343	-				-0.8
3,171,343	-				-0.3
3,171,344	+				-0.9
3,171,344	+				+0.1
3,171,344	+				+0.7
3,171,344	+				-0.2
3,171,344	+				-2.3
3,171,344	+				-1.3
3,171,344	+				-0.3
3,171,345	-				+0.6
3,171,345	-				-0.7
3,171,345	-				-0.8
3,171,345	-				+0.1
3,171,345	-				-0.2
3,171,345	-				+0.5
3,171,346	+				-0.1
3,171,346	+				-0.9
3,171,346	+				+0.2
3,171,346	+				-1.6
3,171,346	+				-0.7
3,171,346	+				-1.5
3,171,347	-				-0.2
3,171,347	-				-0.8
3,171,347	-				-1.3
3,171,347	-				+0.7
3,171,347	-				-1.5
3,171,347	-				+0.4
3,171,463	+				-0.1
3,171,466	+				+0.2
3,171,466	+				+0.8
3,171,467	-				+1.4
3,171,468	+				-0.5
3,171,468	+				+1.0
3,171,468	+				-1.1
3,171,469	-				-0.6
3,171,469	-				-0.1
3,171,472	+				-1.6
3,171,472	+				+0.1
3,171,472	+				-1.1
3,171,473	-				-0.5
3,171,473	-				+0.4
3,171,474	+				-0.1
3,171,496	+				+0.4
3,171,508	+				-1.3
3,171,508	+				-1.9
3,171,509	-				+0.5
3,171,509	-				-1.3
3,171,513	+				+0.3
3,171,513	+				-1.3
3,171,514	-				+0.3
3,171,514	-				-0.8
3,171,514	-				+0.3
3,171,514	-				+0.0
3,171,514	-				+0.1
3,171,515	+				+1.3
3,171,515	+				-0.2
3,171,515	+				+1.1
3,171,516	-				-0.3
3,171,516	-				+0.3
3,171,568	-				+0.7
3,171,620	+				-0.6
3,171,621	-				+0.8
3,171,647	+		DZA65_RS14560	0.17	+2.0
3,171,647	+		DZA65_RS14560	0.17	-0.3
3,171,647	+		DZA65_RS14560	0.17	+0.1
3,171,648	-		DZA65_RS14560	0.17	-1.3
3,171,648	-		DZA65_RS14560	0.17	-0.3
3,171,648	-		DZA65_RS14560	0.17	+0.5
3,171,648	-		DZA65_RS14560	0.17	-0.5
3,171,648	-		DZA65_RS14560	0.17	+0.7
3,171,651	+		DZA65_RS14560	0.18	+0.3
3,171,651	+		DZA65_RS14560	0.18	-0.4
3,171,651	+		DZA65_RS14560	0.18	+0.7
3,171,651	+		DZA65_RS14560	0.18	+1.0
3,171,652	-		DZA65_RS14560	0.18	+0.2
3,171,652	-		DZA65_RS14560	0.18	+0.2
3,171,652	-		DZA65_RS14560	0.18	+1.3
3,171,652	-		DZA65_RS14560	0.18	-0.4
3,171,652	-		DZA65_RS14560	0.18	+0.2
3,171,656	-		DZA65_RS14560	0.20	-0.5
3,171,658	-		DZA65_RS14560	0.20	-0.5
3,171,716	+		DZA65_RS14560	0.37	+0.7
3,171,716	+		DZA65_RS14560	0.37	+2.0
3,171,716	+		DZA65_RS14560	0.37	-0.8
3,171,716	+		DZA65_RS14560	0.37	-0.7
3,171,716	+		DZA65_RS14560	0.37	+0.2
3,171,716	+		DZA65_RS14560	0.37	+1.0
3,171,717	-		DZA65_RS14560	0.37	-0.7
3,171,717	-		DZA65_RS14560	0.37	-0.0
3,171,717	-		DZA65_RS14560	0.37	-0.1
3,171,717	-		DZA65_RS14560	0.37	+2.3
3,171,761	+		DZA65_RS14560	0.50	+0.6
3,171,782	+		DZA65_RS14560	0.56	-0.4
3,171,782	+		DZA65_RS14560	0.56	-2.1
3,171,783	-		DZA65_RS14560	0.57	+1.7
3,171,891	+		DZA65_RS14560	0.88	-0.7
3,171,891	+		DZA65_RS14560	0.88	-0.2
3,171,891	+		DZA65_RS14560	0.88	+1.0
3,171,892	-		DZA65_RS14560	0.89	+0.1
3,171,906	+				+2.1
3,171,906	+				+0.7
3,171,907	-				+1.0
3,171,907	-				-1.6
3,171,919	+				-1.9
3,171,919	+				-0.5
3,171,929	-				+0.3
3,171,944	+				-0.9
3,171,944	+				-0.9
3,171,944	+				+0.1
3,171,945	-				-2.3
3,171,945	-				-1.1
3,171,945	-				+1.4
3,171,945	-				-0.2
3,171,945	-				+1.8
3,171,945	-				-1.5
3,171,946	+				-0.5
3,171,946	+				+0.5
3,171,946	+				-0.0
3,171,947	-				-2.9
3,171,947	-				-0.3
3,171,947	-				+0.3
3,171,947	-				+0.0
3,171,949	+				-0.9
3,171,949	+				+0.8
3,171,949	+				+2.3
3,171,949	+				+1.7
3,171,950	-				+1.2
3,171,950	-				-0.3
3,171,950	-				-1.1
3,171,950	-				-0.3
3,171,950	-				-0.2
3,171,950	-				+1.3
3,171,951	+				-0.0
3,171,951	+				+1.9
3,171,951	+				-0.8
3,171,952	-				-1.8
3,171,971	+				-0.2
3,171,972	-				+0.7
3,171,979	+				+0.7
3,171,980	-				+0.4
3,171,992	+				-0.1
3,171,995	+				-1.8
3,171,995	+				+0.9
3,171,995	+				-1.3
3,171,995	+				+0.5