Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14530

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,163,934	+				+0.2
3,163,935	-				-2.1
3,163,935	-				+0.7
3,163,936	+				-1.3
3,163,965	+				+0.4
3,163,965	+				+0.7
3,163,966	-				+0.6
3,163,966	-				+0.1
3,163,966	-				-0.2
3,163,966	-				+3.4
3,164,012	+		DZA65_RS14525	0.15	+0.3
3,164,012	+		DZA65_RS14525	0.15	-0.2
3,164,012	+		DZA65_RS14525	0.15	-0.5
3,164,012	+		DZA65_RS14525	0.15	-0.0
3,164,012	+		DZA65_RS14525	0.15	-1.7
3,164,013	-		DZA65_RS14525	0.15	+0.0
3,164,082	+		DZA65_RS14525	0.22	-0.9
3,164,082	+		DZA65_RS14525	0.22	+0.1
3,164,082	+		DZA65_RS14525	0.22	-0.9
3,164,085	+		DZA65_RS14525	0.22	-0.8
3,164,086	-		DZA65_RS14525	0.22	-0.3
3,164,086	-		DZA65_RS14525	0.22	+3.0
3,164,120	+		DZA65_RS14525	0.26	+0.7
3,164,120	+		DZA65_RS14525	0.26	+1.3
3,164,121	-		DZA65_RS14525	0.26	+0.5
3,164,121	-		DZA65_RS14525	0.26	-0.9
3,164,121	-		DZA65_RS14525	0.26	+0.3
3,164,121	-		DZA65_RS14525	0.26	+1.0
3,164,121	-		DZA65_RS14525	0.26	+0.3
3,164,122	+		DZA65_RS14525	0.26	+1.1
3,164,122	+		DZA65_RS14525	0.26	+0.8
3,164,122	+		DZA65_RS14525	0.26	-0.7
3,164,122	+		DZA65_RS14525	0.26	+1.1
3,164,122	+		DZA65_RS14525	0.26	+0.0
3,164,122	+		DZA65_RS14525	0.26	+0.4
3,164,122	+		DZA65_RS14525	0.26	-0.6
3,164,122	+		DZA65_RS14525	0.26	-0.5
3,164,123	-		DZA65_RS14525	0.26	-2.3
3,164,123	-		DZA65_RS14525	0.26	-1.9
3,164,123	-		DZA65_RS14525	0.26	-0.6
3,164,123	-		DZA65_RS14525	0.26	-0.6
3,164,123	-				-0.9
3,164,123	-		DZA65_RS14525	0.26	-0.0
3,164,123	-		DZA65_RS14525	0.26	-1.3
3,164,123	-		DZA65_RS14525	0.26	-1.3
3,164,123	-		DZA65_RS14525	0.26	-0.1
3,164,123	-		DZA65_RS14525	0.26	+0.4
3,164,150	+		DZA65_RS14525	0.29	+0.5
3,164,151	-		DZA65_RS14525	0.29	-0.5
3,164,182	+		DZA65_RS14525	0.33	+0.7
3,164,183	-		DZA65_RS14525	0.33	+0.7
3,164,183	-		DZA65_RS14525	0.33	-2.7
3,164,187	-		DZA65_RS14525	0.33	-0.7
3,164,187	-		DZA65_RS14525	0.33	-0.5
3,164,187	-		DZA65_RS14525	0.33	-0.2
3,164,207	+		DZA65_RS14525	0.35	-0.3
3,164,219	+		DZA65_RS14525	0.37	-0.1
3,164,219	+		DZA65_RS14525	0.37	+0.5
3,164,220	-		DZA65_RS14525	0.37	-0.1
3,164,220	-		DZA65_RS14525	0.37	+0.7
3,164,220	-		DZA65_RS14525	0.37	+1.8
3,164,220	-		DZA65_RS14525	0.37	+0.1
3,164,222	-		DZA65_RS14525	0.37	-0.5
3,164,249	+		DZA65_RS14525	0.40	+0.4
3,164,249	+		DZA65_RS14525	0.40	-0.3
3,164,252	+		DZA65_RS14525	0.40	-1.3
3,164,253	-		DZA65_RS14525	0.40	-0.1
3,164,253	-		DZA65_RS14525	0.40	+0.1
3,164,298	+		DZA65_RS14525	0.45	+0.4
3,164,299	-		DZA65_RS14525	0.45	-0.7
3,164,299	-		DZA65_RS14525	0.45	+0.7
3,164,299	-		DZA65_RS14525	0.45	+0.0
3,164,299	-		DZA65_RS14525	0.45	+0.7
3,164,300	+		DZA65_RS14525	0.45	+0.1
3,164,351	+		DZA65_RS14525	0.51	+0.3
3,164,385	+		DZA65_RS14525	0.54	-0.7
3,164,428	+		DZA65_RS14525	0.59	-1.1
3,164,429	-		DZA65_RS14525	0.59	-0.6
3,164,429	-				-0.9
3,164,432	+		DZA65_RS14525	0.59	-0.2
3,164,433	-		DZA65_RS14525	0.59	+0.6
3,164,434	+		DZA65_RS14525	0.59	-0.9
3,164,435	-		DZA65_RS14525	0.60	-0.1
3,164,435	-		DZA65_RS14525	0.60	-0.3
3,164,435	-		DZA65_RS14525	0.60	-0.7
3,164,505	+		DZA65_RS14525	0.67	-0.3
3,164,505	+		DZA65_RS14525	0.67	+0.7
3,164,505	+		DZA65_RS14525	0.67	+0.1
3,164,506	-		DZA65_RS14525	0.67	+0.6
3,164,506	-		DZA65_RS14525	0.67	-0.1
3,164,558	+		DZA65_RS14525	0.73	-2.8
3,164,739	+				+0.1
3,164,739	+				+2.3
3,164,739	+				-0.7
3,164,739	+				+0.7
3,164,740	-				+0.9
3,164,740	-				-0.9
3,164,740	-				+1.1
3,164,740	-				-0.3
3,164,794	+				-0.7
3,164,794	+				-0.7
3,164,794	+				-0.2
3,164,795	-				-0.5
3,164,803	+				+0.1
3,164,803	+				-0.3
3,164,803	+				+0.9
3,164,803	+				-0.7
3,164,804	-				+0.7
3,164,804	-				-1.8
3,164,815	+				-0.3
3,164,815	+				+0.4
3,164,815	+				-0.3
3,164,816	-				+1.3
3,164,847	+				-2.0
3,164,847	+				-1.3
3,164,847	+				-1.1
3,164,847	+				-1.3
3,164,848	-				+0.3
3,164,848	-				-1.1
3,164,848	-				+0.7
3,164,848	-				-0.9
3,164,857	-				+0.4
3,164,857	-				-0.1
3,164,924	+				-0.2
3,164,924	+				-0.0
3,164,924	+				+0.4
3,164,925	-				+0.1
3,164,936	+				+0.1
3,164,936	+				-0.1
3,164,936	+				-1.8
3,164,936	+				-0.2
3,164,936	+				-1.5
3,164,936	+				-1.3
3,164,936	+				+0.8
3,164,937	-				+1.1
3,164,937	-				+0.1
3,164,950	+				-0.5
3,164,950	+				-1.5
3,164,950	+				-1.7
3,164,950	+				-1.3
3,164,950	+				+3.0
3,164,950	+				-1.9
3,164,950	+				+1.3
3,164,950	+				+0.7
3,164,950	+				+0.7
3,164,950	+				-0.9
3,164,951	-				-0.6
3,164,951	-				-1.3
3,164,951	-				-0.7
3,164,951	-				-0.4
3,164,951	-				-1.9
3,164,951	-				+1.7
3,164,951	-				-1.0
3,164,951	-				-0.8
3,164,951	-				+0.7
3,164,951	-				-0.2
3,164,951	-				-0.1
3,164,951	-				-0.6
3,164,952	+				-0.1
3,164,952	+				+0.5
3,164,952	+				+0.9
3,164,952	+				-0.3
3,164,952	+				-0.3
3,164,953	-				+0.9
3,164,953	-				-2.2
3,164,953	-				-0.1
3,164,953	-				+0.7
3,164,954	+				+0.1
3,164,954	+				-0.3
3,164,954	+				-0.7
3,164,954	+				-0.2
3,164,954	+				-0.7
3,164,954	+				-0.5
3,164,954	+				+1.0
3,164,955	-				-1.1
3,164,955	-				-0.3
3,164,975	+				-0.9
3,164,975	+				-0.0
3,164,982	+				+0.4
3,164,982	+				+0.3
3,164,982	+				-2.4
3,164,982	+				-0.2
3,164,983	-				-0.5
3,164,983	-				-0.2
3,164,983	-				-0.1
3,164,983	-				-0.3
3,164,983	-				+1.2
3,164,983	-				+1.7
3,164,983	-				-1.1
3,164,988	+				-0.3
3,165,047	-		DZA65_RS14530	0.11	-0.7
3,165,117	+		DZA65_RS14530	0.18	+0.3
3,165,117	+		DZA65_RS14530	0.18	+0.7
3,165,118	-		DZA65_RS14530	0.18	-3.2
3,165,119	+		DZA65_RS14530	0.18	-0.9
3,165,119	+		DZA65_RS14530	0.18	+0.3
3,165,120	-		DZA65_RS14530	0.18	+0.1
3,165,120	-		DZA65_RS14530	0.18	+2.0
3,165,120	-		DZA65_RS14530	0.18	+1.3
3,165,120	-		DZA65_RS14530	0.18	-1.9
3,165,227	+		DZA65_RS14530	0.28	+0.7
3,165,227	+		DZA65_RS14530	0.28	+0.8
3,165,227	+		DZA65_RS14530	0.28	+0.1
3,165,227	+		DZA65_RS14530	0.28	-0.9
3,165,228	-		DZA65_RS14530	0.28	+0.7
3,165,228	-		DZA65_RS14530	0.28	-0.1
3,165,228	-		DZA65_RS14530	0.28	-0.6
3,165,228	-		DZA65_RS14530	0.28	-0.1
3,165,228	-		DZA65_RS14530	0.28	+0.4
3,165,255	+		DZA65_RS14530	0.30	-2.1
3,165,255	+		DZA65_RS14530	0.30	+0.4
3,165,259	+		DZA65_RS14530	0.31	-2.1
3,165,259	+		DZA65_RS14530	0.31	-0.7
3,165,259	+		DZA65_RS14530	0.31	+0.3
3,165,259	+		DZA65_RS14530	0.31	-0.1
3,165,260	-		DZA65_RS14530	0.31	+0.0
3,165,260	-		DZA65_RS14530	0.31	+0.2
3,165,260	-		DZA65_RS14530	0.31	+1.1
3,165,260	-		DZA65_RS14530	0.31	-0.5
3,165,260	-		DZA65_RS14530	0.31	+0.1
3,165,260	-		DZA65_RS14530	0.31	-0.7
3,165,260	-		DZA65_RS14530	0.31	+0.3
3,165,260	-		DZA65_RS14530	0.31	+0.6
3,165,300	+		DZA65_RS14530	0.34	+0.7
3,165,301	-		DZA65_RS14530	0.34	+1.4
3,165,301	-		DZA65_RS14530	0.34	-0.1
3,165,301	-		DZA65_RS14530	0.34	-2.0
3,165,328	-		DZA65_RS14530	0.37	+0.9
3,165,333	+		DZA65_RS14530	0.37	+0.3
3,165,333	+		DZA65_RS14530	0.37	-0.4
3,165,342	+		DZA65_RS14530	0.38	+0.2
3,165,342	+		DZA65_RS14530	0.38	-0.1
3,165,388	-		DZA65_RS14530	0.42	-0.2
3,165,408	+		DZA65_RS14530	0.44	+0.2
3,165,470	+		DZA65_RS14530	0.50	+1.1
3,165,471	-		DZA65_RS14530	0.50	-0.7
3,165,575	-		DZA65_RS14530	0.59	-0.6
3,165,614	+		DZA65_RS14530	0.63	-0.3
3,165,614	+		DZA65_RS14530	0.63	-0.1
3,165,614	+		DZA65_RS14530	0.63	+0.2
3,165,614	+		DZA65_RS14530	0.63	+0.7
3,165,614	+		DZA65_RS14530	0.63	-1.9
3,165,614	+		DZA65_RS14530	0.63	-0.6
3,165,614	+		DZA65_RS14530	0.63	+0.4
3,165,615	-		DZA65_RS14530	0.63	+0.2
3,165,615	-		DZA65_RS14530	0.63	-0.0
3,165,615	-		DZA65_RS14530	0.63	-0.3
3,165,615	-		DZA65_RS14530	0.63	+2.0
3,165,615	-		DZA65_RS14530	0.63	+0.7
3,165,615	-		DZA65_RS14530	0.63	+0.8
3,165,615	-		DZA65_RS14530	0.63	-0.1
3,165,618	+		DZA65_RS14530	0.63	-0.2
3,165,618	+		DZA65_RS14530	0.63	+1.7
3,165,618	+		DZA65_RS14530	0.63	-0.1
3,165,619	-		DZA65_RS14530	0.63	+0.7
3,165,619	-		DZA65_RS14530	0.63	+0.2
3,165,654	+		DZA65_RS14530	0.67	+0.9
3,165,654	+		DZA65_RS14530	0.67	+0.5
3,165,654	+		DZA65_RS14530	0.67	-1.1
3,165,654	+		DZA65_RS14530	0.67	-0.7
3,165,718	+		DZA65_RS14530	0.72	-0.3
3,165,718	+		DZA65_RS14530	0.72	-0.1
3,165,719	-		DZA65_RS14530	0.72	+0.2
3,165,719	-		DZA65_RS14530	0.72	+1.0
3,165,719	-		DZA65_RS14530	0.72	-1.8
3,165,740	-		DZA65_RS14530	0.74	-2.1
3,165,740	-		DZA65_RS14530	0.74	+0.3
3,165,740	-		DZA65_RS14530	0.74	-1.0
3,165,756	+		DZA65_RS14530	0.76	-0.9
3,165,756	+		DZA65_RS14530	0.76	+0.1
3,165,756	+		DZA65_RS14530	0.76	+1.3
3,165,756	+		DZA65_RS14530	0.76	-0.4
3,165,756	+		DZA65_RS14530	0.76	+0.8
3,165,756	+		DZA65_RS14530	0.76	+0.3
3,165,756	+		DZA65_RS14530	0.76	+0.6
3,165,757	-		DZA65_RS14530	0.76	+0.3
3,165,757	-		DZA65_RS14530	0.76	+0.2
3,165,757	-		DZA65_RS14530	0.76	-1.1
3,165,757	-		DZA65_RS14530	0.76	+0.7
3,165,757	-		DZA65_RS14530	0.76	-0.7
3,165,760	+		DZA65_RS14530	0.76	+0.5
3,165,760	+		DZA65_RS14530	0.76	-1.1
3,165,761	-		DZA65_RS14530	0.76	+0.7
3,165,761	-		DZA65_RS14530	0.76	-0.1
3,165,761	-		DZA65_RS14530	0.76	-1.0
3,165,761	-		DZA65_RS14530	0.76	+1.1
3,165,761	-		DZA65_RS14530	0.76	-0.1
3,165,761	-		DZA65_RS14530	0.76	+1.8
3,165,761	-		DZA65_RS14530	0.76	+0.9
3,165,762	-		DZA65_RS14530	0.76	-0.9
3,165,790	+		DZA65_RS14530	0.79	+1.4
3,165,790	+		DZA65_RS14530	0.79	-0.6
3,165,790	+		DZA65_RS14530	0.79	+0.8
3,165,791	-		DZA65_RS14530	0.79	+0.2
3,165,791	-		DZA65_RS14530	0.79	-1.9
3,165,791	-		DZA65_RS14530	0.79	+1.9
3,165,791	-		DZA65_RS14530	0.79	+0.1
3,165,806	+		DZA65_RS14530	0.80	+0.5
3,165,806	+		DZA65_RS14530	0.80	-0.1
3,165,806	+		DZA65_RS14530	0.80	+0.4
3,165,807	-		DZA65_RS14530	0.81	+1.7
3,165,821	+		DZA65_RS14530	0.82	+1.1
3,165,822	-		DZA65_RS14530	0.82	-0.3
3,165,871	+		DZA65_RS14530	0.86	-1.5
3,165,899	+		DZA65_RS14530	0.89	+0.3
3,165,899	+		DZA65_RS14530	0.89	+0.3
3,165,900	-		DZA65_RS14530	0.89	-0.2
3,165,900	-		DZA65_RS14530	0.89	-0.3
3,165,900	-		DZA65_RS14530	0.89	-0.1
3,165,900	-		DZA65_RS14530	0.89	+0.3
3,165,900	-		DZA65_RS14530	0.89	-0.3
3,165,924	+				+0.7
3,165,925	-				+0.5
3,165,931	-				+0.0
3,165,931	-				-0.9
3,165,931	-				-0.2
3,165,931	-				-0.0
3,165,931	-				+0.1
3,165,931	-				+0.3
3,165,931	-				-1.3
3,165,933	-				+0.9
3,165,961	-				-1.3
3,165,972	+				+0.9
3,165,972	+				+0.4
3,165,973	-				-0.1
3,165,973	-				+0.2
3,165,982	+				+0.7
3,165,983	-				-0.7
3,165,998	+				-0.2
3,166,002	+				+0.3
3,166,002	+				+2.7
3,166,002	+				-0.7
3,166,003	-				-1.3
3,166,046	+				-0.9
3,166,046	+				-0.0
3,166,047	-				-0.7
3,166,070	-				+1.7
3,166,070	-				+0.3
3,166,070	-				-0.1
3,166,070	-				+1.0
3,166,092	+				+1.1
3,166,093	-				-0.7
3,166,121	+				+0.6
3,166,124	-				+0.1
3,166,285	+		DZA65_RS14535	0.16	+0.7
3,166,285	+		DZA65_RS14535	0.16	+0.7
3,166,335	+		DZA65_RS14535	0.21	-1.9
3,166,335	+		DZA65_RS14535	0.21	-0.6
3,166,335	+		DZA65_RS14535	0.21	+1.0
3,166,336	-		DZA65_RS14535	0.21	-1.9
3,166,336	-		DZA65_RS14535	0.21	+2.4
3,166,336	-		DZA65_RS14535	0.21	-0.2
3,166,390	+		DZA65_RS14535	0.27	-0.7
3,166,390	+		DZA65_RS14535	0.27	-0.9
3,166,478	+		DZA65_RS14535	0.36	+0.7
3,166,478	+		DZA65_RS14535	0.36	+1.2
3,166,478	+		DZA65_RS14535	0.36	-1.0
3,166,479	-		DZA65_RS14535	0.36	+0.7
3,166,479	-		DZA65_RS14535	0.36	-0.9
3,166,489	+		DZA65_RS14535	0.38	-0.5
3,166,490	-		DZA65_RS14535	0.38	-1.9
3,166,635	-		DZA65_RS14535	0.53	+0.2
3,166,744	-		DZA65_RS14535	0.65	-0.7
3,166,777	+		DZA65_RS14535	0.68	-1.2
3,166,777	+		DZA65_RS14535	0.68	+0.1
3,166,778	-		DZA65_RS14535	0.69	-0.7
3,166,778	-		DZA65_RS14535	0.69	+3.0
3,166,778	-		DZA65_RS14535	0.69	-0.1
3,166,778	-		DZA65_RS14535	0.69	-0.9
3,166,778	-		DZA65_RS14535	0.69	+0.7
3,166,778	-		DZA65_RS14535	0.69	-0.1
3,166,808	+		DZA65_RS14535	0.72	+0.5
3,166,808	+		DZA65_RS14535	0.72	-0.2
3,166,808	+		DZA65_RS14535	0.72	-0.7
3,166,809	-		DZA65_RS14535	0.72	-0.9
3,166,809	-		DZA65_RS14535	0.72	-0.2
3,166,918	+		DZA65_RS14535	0.84	+0.1
3,166,919	-		DZA65_RS14535	0.84	-1.0
3,166,985	+				+0.9