Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14450

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,147,680	+		DZA65_RS14435	0.36	+0.4
3,147,680	+		DZA65_RS14435	0.36	-0.9
3,147,748	+		DZA65_RS14435	0.53	-0.8
3,147,748	+		DZA65_RS14435	0.53	+0.3
3,147,748	+				+0.3
3,147,748	+		DZA65_RS14435	0.53	+0.0
3,147,748	+		DZA65_RS14435	0.53	+0.3
3,147,749	-		DZA65_RS14435	0.53	+1.5
3,147,749	-		DZA65_RS14435	0.53	+1.1
3,147,749	-		DZA65_RS14435	0.53	+0.8
3,147,749	-		DZA65_RS14435	0.53	-0.3
3,147,749	-		DZA65_RS14435	0.53	-1.3
3,147,750	+		DZA65_RS14435	0.53	+0.7
3,147,750	+		DZA65_RS14435	0.53	+1.1
3,147,750	+		DZA65_RS14435	0.53	-1.2
3,147,750	+		DZA65_RS14435	0.53	+1.7
3,147,750	+		DZA65_RS14435	0.53	-1.2
3,147,750	+		DZA65_RS14435	0.53	+0.3
3,147,822	+		DZA65_RS14435	0.71	-0.1
3,147,822	+		DZA65_RS14435	0.71	-1.7
3,147,822	+		DZA65_RS14435	0.71	-1.3
3,147,822	+		DZA65_RS14435	0.71	+0.5
3,147,823	-		DZA65_RS14435	0.71	-0.0
3,147,876	+		DZA65_RS14435	0.84	+0.4
3,147,876	+		DZA65_RS14435	0.84	-1.7
3,147,876	+		DZA65_RS14435	0.84	+0.4
3,147,877	-		DZA65_RS14435	0.85	+0.9
3,147,877	-		DZA65_RS14435	0.85	-1.8
3,147,884	+		DZA65_RS14435	0.86	-0.1
3,147,885	-		DZA65_RS14435	0.87	+0.5
3,147,977	+				+0.4
3,147,977	+				-0.1
3,147,977	+				+0.1
3,147,986	+				-0.1
3,147,989	+				+0.5
3,147,989	+				+0.7
3,148,000	+				-0.3
3,148,000	+				+0.4
3,148,000	+				-0.9
3,148,000	+				+1.3
3,148,001	-				+0.3
3,148,001	-				+0.9
3,148,103	+		DZA65_RS14440	0.32	-0.9
3,148,103	+		DZA65_RS14440	0.32	+0.2
3,148,103	+		DZA65_RS14440	0.32	+1.8
3,148,103	+		DZA65_RS14440	0.32	+0.1
3,148,103	+		DZA65_RS14440	0.32	-2.1
3,148,103	+		DZA65_RS14440	0.32	+0.4
3,148,103	+		DZA65_RS14440	0.32	-0.6
3,148,103	+		DZA65_RS14440	0.32	-1.1
3,148,103	+				+0.3
3,148,104	-		DZA65_RS14440	0.33	-0.5
3,148,104	-		DZA65_RS14440	0.33	-0.6
3,148,104	-		DZA65_RS14440	0.33	-2.7
3,148,104	-		DZA65_RS14440	0.33	+0.0
3,148,104	-		DZA65_RS14440	0.33	+0.3
3,148,104	-		DZA65_RS14440	0.33	-0.2
3,148,278	+		DZA65_RS14440	0.90	-0.0
3,148,278	+		DZA65_RS14440	0.90	-1.4
3,148,278	+		DZA65_RS14440	0.90	-1.2
3,148,417	-		DZA65_RS14445	0.26	+0.2
3,148,482	+		DZA65_RS14445	0.50	-0.3
3,148,482	+		DZA65_RS14445	0.50	+0.7
3,148,500	+		DZA65_RS14445	0.56	-0.3
3,148,529	+		DZA65_RS14445	0.67	-0.9
3,148,529	+		DZA65_RS14445	0.67	-0.9
3,148,530	-		DZA65_RS14445	0.67	-1.1
3,148,626	+				-1.1
3,148,626	+				-0.3
3,148,642	+				-0.9
3,148,642	+				-2.0
3,148,642	+				-0.6
3,148,649	+				+0.9
3,148,649	+				-1.8
3,148,649	+				+0.9
3,148,649	+				+0.7
3,148,649	+				+0.4
3,148,650	-				-0.6
3,148,650	-				+0.8
3,148,650	-				+0.2
3,148,650	-				+0.7
3,148,651	+				-0.1
3,148,651	+				-1.7
3,148,652	-				+1.7
3,148,652	-				+0.4
3,148,652	-				+0.4
3,148,652	-				-1.7
3,148,652	-				+0.1
3,148,652	-				-0.3
3,148,652	-				-0.7
3,148,652	-				-0.3
3,148,655	-				-0.8
3,148,678	+				+1.0
3,148,678	+				+0.4
3,148,679	-				-0.5
3,148,679	-				-0.9
3,148,679	-				-2.3
3,148,679	-				+0.0
3,148,679	-				-0.9
3,148,680	+				-0.3
3,148,680	+				-0.2
3,148,680	+				+0.5
3,148,681	-				+0.6
3,148,681	-				+0.3
3,148,734	-		DZA65_RS14450	0.15	+0.7
3,148,740	-		DZA65_RS14450	0.16	-0.3
3,148,740	-				+1.1
3,148,748	+		DZA65_RS14450	0.18	-0.5
3,148,749	-		DZA65_RS14450	0.18	+2.1
3,148,749	-		DZA65_RS14450	0.18	-1.1
3,148,761	+		DZA65_RS14450	0.20	-0.8
3,148,761	+		DZA65_RS14450	0.20	-0.3
3,148,762	-		DZA65_RS14450	0.20	+0.8
3,148,762	-		DZA65_RS14450	0.20	-0.9
3,148,770	-		DZA65_RS14450	0.22	-0.3
3,148,770	-		DZA65_RS14450	0.22	-0.7
3,148,770	-		DZA65_RS14450	0.22	+1.3
3,148,770	-		DZA65_RS14450	0.22	-0.9
3,148,820	+		DZA65_RS14450	0.31	+0.3
3,148,820	+		DZA65_RS14450	0.31	-0.9
3,148,845	+		DZA65_RS14450	0.35	+0.4
3,148,846	-		DZA65_RS14450	0.35	+0.3
3,148,876	+				+0.7
3,148,876	+		DZA65_RS14450	0.41	-0.7
3,148,876	+		DZA65_RS14450	0.41	-0.5
3,148,906	+		DZA65_RS14450	0.46	-0.9
3,148,906	+		DZA65_RS14450	0.46	-0.3
3,148,907	-				+0.1
3,148,912	-		DZA65_RS14450	0.47	+0.4
3,148,921	+		DZA65_RS14450	0.49	-1.4
3,148,921	+		DZA65_RS14450	0.49	-2.0
3,148,922	-		DZA65_RS14450	0.49	-0.9
3,148,922	-		DZA65_RS14450	0.49	-1.9
3,148,922	-		DZA65_RS14450	0.49	-1.3
3,148,925	+		DZA65_RS14450	0.50	+0.9
3,148,933	+		DZA65_RS14450	0.51	+0.9
3,148,933	+		DZA65_RS14450	0.51	-1.8
3,148,933	+		DZA65_RS14450	0.51	-0.3
3,148,933	+		DZA65_RS14450	0.51	-0.7
3,148,933	+		DZA65_RS14450	0.51	+1.4
3,148,933	+		DZA65_RS14450	0.51	+1.3
3,148,933	+		DZA65_RS14450	0.51	-0.0
3,148,934	-		DZA65_RS14450	0.51	+0.1
3,148,934	-		DZA65_RS14450	0.51	+0.9
3,148,934	-		DZA65_RS14450	0.51	-0.3
3,148,935	+		DZA65_RS14450	0.51	-0.3
3,148,936	-		DZA65_RS14450	0.52	+0.8
3,148,944	+		DZA65_RS14450	0.53	+0.1
3,148,967	-		DZA65_RS14450	0.57	+0.4
3,148,991	+		DZA65_RS14450	0.61	+0.1
3,148,991	+		DZA65_RS14450	0.61	-1.3
3,149,085	+		DZA65_RS14450	0.78	+0.3
3,149,085	+		DZA65_RS14450	0.78	-0.3
3,149,086	-		DZA65_RS14450	0.78	-1.1
3,149,086	-		DZA65_RS14450	0.78	-1.9
3,149,115	+		DZA65_RS14450	0.84	+0.7
3,149,115	+		DZA65_RS14450	0.84	-0.1
3,149,115	+		DZA65_RS14450	0.84	-0.3
3,149,115	+		DZA65_RS14450	0.84	+2.3
3,149,115	+		DZA65_RS14450	0.84	-0.6
3,149,115	+		DZA65_RS14450	0.84	-2.1
3,149,116	-		DZA65_RS14450	0.84	-0.7
3,149,116	-		DZA65_RS14450	0.84	+0.4
3,149,117	+		DZA65_RS14450	0.84	+0.7
3,149,118	-		DZA65_RS14450	0.84	-0.5
3,149,118	-		DZA65_RS14450	0.84	-0.9
3,149,140	+		DZA65_RS14450	0.88	-1.3
3,149,140	+		DZA65_RS14450	0.88	-1.7
3,149,141	-		DZA65_RS14450	0.88	+0.9
3,149,149	-				+1.7
3,149,184	+				-0.9
3,149,196	+				-0.1
3,149,197	-				-0.7
3,149,205	+				+1.2
3,149,205	+				-1.1
3,149,205	+				+0.7
3,149,205	+				+1.5
3,149,206	-				-0.4
3,149,337	+				-2.8
3,149,338	-				+0.3
3,149,342	+				+1.3
3,149,342	+				+0.3
3,149,345	-				-1.9
3,149,413	-				-0.7
3,149,429	-				-1.9
3,149,464	-				+0.4
3,149,472	-				-0.2
3,149,502	-				-0.3
3,149,567	+				-0.9
3,149,571	-				+0.4
3,149,576	+				-0.7
3,149,576	+				+0.7
3,149,576	+				+0.2
3,149,577	-				-0.1
3,149,577	-				-0.9
3,149,580	+				+0.3
3,149,647	+				-0.6
3,149,710	+				-1.7
3,150,043	+				-0.2
3,150,064	+				-0.7
3,150,064	+				+0.0
3,150,065	-				+0.2