Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14365

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,130,400	+		DZA65_RS14350	0.42	+0.7
3,130,427	+		DZA65_RS14350	0.47	-1.4
3,130,427	+		DZA65_RS14350	0.47	-0.6
3,130,427	+		DZA65_RS14350	0.47	+0.8
3,130,427	+		DZA65_RS14350	0.47	+0.7
3,130,428	-		DZA65_RS14350	0.47	+0.2
3,130,428	-		DZA65_RS14350	0.47	-0.2
3,130,428	-		DZA65_RS14350	0.47	-0.3
3,130,524	-		DZA65_RS14350	0.64	+0.7
3,130,592	+		DZA65_RS14350	0.75	-1.7
3,130,592	+		DZA65_RS14350	0.75	-0.3
3,130,683	-				-0.0
3,130,812	+		DZA65_RS14355	0.41	+0.7
3,130,813	-		DZA65_RS14355	0.41	-0.2
3,130,813	-				+0.7
3,130,823	+		DZA65_RS14355	0.46	-0.1
3,130,823	+		DZA65_RS14355	0.46	-0.7
3,130,823	+		DZA65_RS14355	0.46	-0.6
3,130,824	-		DZA65_RS14355	0.47	-1.1
3,130,829	-		DZA65_RS14355	0.49	-1.9
3,130,913	+		DZA65_RS14355	0.89	-0.3
3,130,914	-				-0.9
3,130,914	-		DZA65_RS14355	0.90	-0.0
3,130,947	+				-0.6
3,130,947	+				-0.5
3,131,018	+				-0.7
3,131,075	-				+0.8
3,131,201	+				+0.4
3,131,202	-				-0.5
3,131,202	-				-0.7
3,131,202	-				+0.7
3,131,202	-				-1.3
3,131,202	-				+1.2
3,131,202	-				-2.5
3,131,202	-				+0.4
3,131,202	-				+2.2
3,131,291	+				-0.1
3,131,305	-				-1.5
3,131,362	+				+0.4
3,131,419	+				-1.7
3,131,703	+				-1.7
3,131,719	+				+0.1
3,131,719	+				+0.7
3,131,732	+				-1.1
3,131,732	+				-1.7
3,131,785	+		DZA65_RS14365	0.11	+0.8
3,131,790	-		DZA65_RS14365	0.11	-0.7
3,131,820	+		DZA65_RS14365	0.12	-1.1
3,131,820	+		DZA65_RS14365	0.12	-1.1
3,131,898	-		DZA65_RS14365	0.14	+0.1
3,131,903	-		DZA65_RS14365	0.14	-0.9
3,131,903	-		DZA65_RS14365	0.14	-0.6
3,131,903	-		DZA65_RS14365	0.14	-0.6
3,131,935	+		DZA65_RS14365	0.15	-0.8
3,131,940	-		DZA65_RS14365	0.15	+0.2
3,131,950	+		DZA65_RS14365	0.16	+0.7
3,131,959	+		DZA65_RS14365	0.16	-0.2
3,132,005	-		DZA65_RS14365	0.17	-0.0
3,132,007	-		DZA65_RS14365	0.17	+0.7
3,132,174	+		DZA65_RS14365	0.21	+0.0
3,132,282	-		DZA65_RS14365	0.24	-1.3
3,132,282	-		DZA65_RS14365	0.24	-0.2
3,132,284	+		DZA65_RS14365	0.24	-0.1
3,132,285	-		DZA65_RS14365	0.24	+1.0
3,132,464	+		DZA65_RS14365	0.29	-0.3
3,132,517	-		DZA65_RS14365	0.30	-0.6
3,132,569	+		DZA65_RS14365	0.32	+0.1
3,132,569	+		DZA65_RS14365	0.32	-0.1
3,132,569	+		DZA65_RS14365	0.32	-2.5
3,132,569	+		DZA65_RS14365	0.32	+0.1
3,132,602	-		DZA65_RS14365	0.33	-0.8
3,132,887	+		DZA65_RS14365	0.40	-0.3
3,133,057	+		DZA65_RS14365	0.45	+0.9
3,133,268	-		DZA65_RS14365	0.50	-0.5
3,133,283	-		DZA65_RS14365	0.51	-2.3
3,133,283	-		DZA65_RS14365	0.51	-2.1
3,133,309	+		DZA65_RS14365	0.51	+0.4
3,133,313	-		DZA65_RS14365	0.51	-2.3
3,133,313	-		DZA65_RS14365	0.51	-0.6
3,133,317	-		DZA65_RS14365	0.51	-0.4
3,133,576	+		DZA65_RS14365	0.58	+2.7
3,133,613	+		DZA65_RS14365	0.59	-0.9
3,133,636	+		DZA65_RS14365	0.60	-1.5
3,133,685	-		DZA65_RS14365	0.61	-1.3
3,134,034	+		DZA65_RS14365	0.70	-0.2
3,134,299	+		DZA65_RS14365	0.77	-0.3
3,134,304	-		DZA65_RS14365	0.77	+0.5
3,134,395	+		DZA65_RS14365	0.80	-0.5
3,134,396	-		DZA65_RS14365	0.80	-0.3
3,134,533	+		DZA65_RS14365	0.83	-0.1
3,134,571	-		DZA65_RS14365	0.84	-1.2
3,134,682	-		DZA65_RS14365	0.87	-0.8
3,134,686	-		DZA65_RS14365	0.87	+0.1
3,134,873	+				-0.4
3,135,016	+				+0.1
3,135,016	+				+0.1
3,135,017	-				-0.3
3,135,149	+				-1.5
3,135,201	+				+0.2
3,135,202	-				-0.5
3,135,256	+				-0.1
3,135,265	-				-0.7
3,135,324	+				-0.2
3,135,330	-				-0.7
3,135,342	-				-0.4
3,135,353	+				-1.7
3,135,356	-				-1.3
3,135,358	-				+0.7
3,135,359	+				-0.9
3,135,420	-				-0.3
3,135,497	-				-1.3
3,135,540	+				+0.0
3,135,552	+				-1.1
3,135,570	+				+0.9
3,135,571	-				-0.1
3,135,622	+				+0.3
3,135,629	+				-0.3
3,135,673	-				+0.7
3,135,684	+				+0.5
3,135,684	+				-0.1
3,135,684	+				+1.5
3,135,685	-				-0.3
3,135,685	-				-2.4
3,135,688	+				+0.2
3,135,688	+				+0.3
3,135,688	+				+0.2
3,135,688	+				-1.7
3,135,688	+				-0.2
3,135,689	-				-0.7
3,135,689	-				-0.1
3,135,704	+				-0.2
3,135,705	-				-0.2
3,135,705	-				-1.3
3,135,706	+				-0.7
3,135,778	+				-1.7
3,135,779	-				-0.6
3,135,779	-				+0.4
3,135,857	+				+0.4
3,135,894	+				+0.0
3,135,894	+				+4.5
3,135,996	+				+0.9
3,136,019	+				-0.0
3,136,020	-				-0.3
3,136,032	-				-1.1
3,136,047	-				+0.2
3,136,051	-				+0.0
3,136,057	+				-0.6
3,136,058	-		DZA65_RS14370	0.10	-0.5
3,136,087	+		DZA65_RS14370	0.23	-1.3
3,136,087	+		DZA65_RS14370	0.23	+0.4
3,136,088	-		DZA65_RS14370	0.24	+0.5
3,136,107	+		DZA65_RS14370	0.32	-0.4
3,136,107	+		DZA65_RS14370	0.32	-1.7
3,136,107	+		DZA65_RS14370	0.32	+1.0
3,136,107	+		DZA65_RS14370	0.32	+0.3
3,136,107	+		DZA65_RS14370	0.32	+0.3
3,136,107	+		DZA65_RS14370	0.32	+0.2
3,136,108	-		DZA65_RS14370	0.33	+1.0
3,136,108	-		DZA65_RS14370	0.33	-0.6
3,136,108	-		DZA65_RS14370	0.33	-0.1
3,136,108	-		DZA65_RS14370	0.33	-0.9
3,136,108	-		DZA65_RS14370	0.33	-1.7
3,136,108	-		DZA65_RS14370	0.33	+1.3
3,136,108	-		DZA65_RS14370	0.33	+0.8
3,136,108	-		DZA65_RS14370	0.33	-0.8
3,136,108	-		DZA65_RS14370	0.33	-0.2
3,136,126	+		DZA65_RS14370	0.41	+0.6
3,136,165	+		DZA65_RS14370	0.59	+0.3
3,136,165	+		DZA65_RS14370	0.59	+0.0
3,136,166	-		DZA65_RS14370	0.59	+0.3