Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12490

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,673,231	+		DZA65_RS12485	0.45	+0.5
2,673,231	+		DZA65_RS12485	0.45	-0.2
2,673,232	-		DZA65_RS12485	0.45	-1.5
2,673,232	-		DZA65_RS12485	0.45	-1.3
2,673,232	-		DZA65_RS12485	0.45	+1.8
2,673,232	-		DZA65_RS12485	0.45	+0.9
2,673,232	-		DZA65_RS12485	0.45	+0.5
2,673,274	-		DZA65_RS12485	0.47	-1.5
2,673,282	-		DZA65_RS12485	0.48	+1.8
2,673,282	-		DZA65_RS12485	0.48	-1.7
2,673,282	-		DZA65_RS12485	0.48	+0.0
2,673,289	+		DZA65_RS12485	0.48	-0.6
2,673,290	-		DZA65_RS12485	0.48	-0.1
2,673,290	-		DZA65_RS12485	0.48	+0.8
2,673,290	-		DZA65_RS12485	0.48	-1.1
2,673,417	+		DZA65_RS12485	0.55	+0.3
2,673,417	+		DZA65_RS12485	0.55	+0.3
2,673,417	+		DZA65_RS12485	0.55	+1.7
2,673,418	-		DZA65_RS12485	0.55	-0.7
2,673,517	+		DZA65_RS12485	0.61	+0.5
2,673,517	+		DZA65_RS12485	0.61	-0.9
2,673,518	-		DZA65_RS12485	0.61	-0.1
2,673,518	-		DZA65_RS12485	0.61	-1.5
2,673,518	-		DZA65_RS12485	0.61	-0.8
2,673,518	-		DZA65_RS12485	0.61	+1.0
2,673,518	-		DZA65_RS12485	0.61	+0.1
2,673,518	-		DZA65_RS12485	0.61	-0.0
2,673,604	+		DZA65_RS12485	0.66	-1.8
2,673,605	-		DZA65_RS12485	0.66	-1.8
2,673,605	-		DZA65_RS12485	0.66	-0.4
2,673,605	-		DZA65_RS12485	0.66	-0.8
2,673,605	-		DZA65_RS12485	0.66	+1.1
2,673,605	-		DZA65_RS12485	0.66	+0.3
2,673,605	-		DZA65_RS12485	0.66	-0.5
2,673,708	+		DZA65_RS12485	0.71	-2.5
2,673,709	-		DZA65_RS12485	0.71	-0.8
2,673,709	-		DZA65_RS12485	0.71	+0.7
2,673,861	-		DZA65_RS12485	0.80	-0.9
2,673,879	-		DZA65_RS12485	0.81	-0.3
2,673,879	-		DZA65_RS12485	0.81	-0.6
2,673,886	-		DZA65_RS12485	0.81	-1.5
2,673,886	-		DZA65_RS12485	0.81	-1.1
2,673,886	-		DZA65_RS12485	0.81	+1.7
2,673,955	+		DZA65_RS12485	0.85	-1.4
2,673,959	+		DZA65_RS12485	0.85	-0.5
2,673,959	+		DZA65_RS12485	0.85	-0.8
2,673,960	-		DZA65_RS12485	0.85	-0.2
2,673,960	-		DZA65_RS12485	0.85	-1.2
2,673,960	-		DZA65_RS12485	0.85	-0.6
2,673,988	+				-1.5
2,673,988	+		DZA65_RS12485	0.87	-1.7
2,673,988	+		DZA65_RS12485	0.87	+0.9
2,673,989	-		DZA65_RS12485	0.87	-1.9
2,673,989	-		DZA65_RS12485	0.87	+0.1
2,674,015	+		DZA65_RS12485	0.88	+1.5
2,674,080	-				+0.9
2,674,129	+				+0.6
2,674,129	+				+0.5
2,674,129	+				+1.3
2,674,130	-				-0.4
2,674,130	-				+0.1
2,674,188	-				-0.8
2,674,188	-				+1.5
2,674,295	+		DZA65_RS12490	0.11	+0.1
2,674,295	+		DZA65_RS12490	0.11	+0.9
2,674,295	+		DZA65_RS12490	0.11	-0.2
2,674,295	+		DZA65_RS12490	0.11	+0.1
2,674,296	-		DZA65_RS12490	0.12	-0.2
2,674,296	-		DZA65_RS12490	0.12	+1.1
2,674,296	-		DZA65_RS12490	0.12	+0.3
2,674,296	-		DZA65_RS12490	0.12	-2.3
2,674,318	+		DZA65_RS12490	0.15	+0.1
2,674,514	+		DZA65_RS12490	0.45	-1.1
2,674,515	-		DZA65_RS12490	0.45	-0.5
2,674,533	+		DZA65_RS12490	0.48	+0.4
2,674,533	+		DZA65_RS12490	0.48	-0.3
2,674,714	+		DZA65_RS12490	0.76	-0.3
2,674,714	+		DZA65_RS12490	0.76	+1.5
2,674,714	+		DZA65_RS12490	0.76	-0.5
2,674,714	+		DZA65_RS12490	0.76	-1.5
2,674,715	-		DZA65_RS12490	0.76	-0.9
2,674,715	-		DZA65_RS12490	0.76	+1.1
2,674,715	-		DZA65_RS12490	0.76	-0.5
2,674,715	-		DZA65_RS12490	0.76	+0.5
2,674,715	-		DZA65_RS12490	0.76	-2.2
2,674,715	-		DZA65_RS12490	0.76	-1.2
2,674,715	-		DZA65_RS12490	0.76	+0.7
2,674,715	-		DZA65_RS12490	0.76	-0.2
2,674,941	-				-0.6
2,674,970	+				+0.3
2,674,988	+				-0.5
2,674,989	-				-0.6
2,674,989	-				-1.5
2,674,990	+				-0.5
2,674,990	+				-0.3
2,674,990	+				-1.8
2,674,991	-				-0.0
2,675,019	+				+0.4
2,675,027	-				-0.9
2,675,039	+				-0.3
2,675,043	-				-0.6
2,675,061	+				-0.7
2,675,065	+				-0.2
2,675,065	+				+0.8
2,675,065	+				+0.3
2,675,065	+				-0.2
2,675,066	-				+0.1
2,675,066	-				-2.9
2,675,168	+				-0.1
2,675,169	-				-0.1
2,675,169	-				+0.0
2,675,205	+				-1.4
2,675,205	+				-0.5
2,675,205	+				-0.5
2,675,205	+				-1.7
2,675,205	+				+0.1
2,675,205	+				-1.1
2,675,205	+				+1.7
2,675,205	+				-1.3
2,675,205	+				+1.3
2,675,206	-				-0.5
2,675,206	-				+0.4
2,675,206	-				-0.7
2,675,206	-				-0.9
2,675,206	-				+0.1
2,675,206	-				+1.8
2,675,206	-				+3.4
2,675,206	-				-0.1
2,675,206	-				+1.5
2,675,206	-				-0.6
2,675,206	-				-2.1
2,675,217	+				-1.5
2,675,217	+				+0.4
2,675,217	+				+0.1
2,675,217	+				+0.1
2,675,218	-				-0.5
2,675,218	-				+0.1
2,675,227	+				+1.1
2,675,227	+				+0.5
2,675,227	+				-1.1
2,675,227	+				+0.5
2,675,227	+				-1.5
2,675,227	+				+0.1
2,675,227	+				+0.5
2,675,227	+				+0.5
2,675,227	+				-0.6
2,675,227	+				-0.2
2,675,227	+				-0.5
2,675,227	+				+1.9
2,675,227	+				+0.7
2,675,227	+				-0.1
2,675,227	+				+0.3
2,675,228	-				-0.6
2,675,228	-				+0.1
2,675,228	-				-0.7
2,675,228	-				+1.1
2,675,228	-				-0.2
2,675,228	-				-0.2
2,675,228	-				-0.5
2,675,228	-				-1.5
2,675,228	-				-1.3
2,675,228	-				+1.5
2,675,231	+				+0.1
2,675,231	+				+0.5
2,675,231	+				+0.1
2,675,231	+				-0.3
2,675,231	+				-0.2
2,675,231	+				+0.0
2,675,231	+				-0.6
2,675,231	+				+0.3
2,675,231	+				+0.5
2,675,231	+				+1.2
2,675,231	+				-0.6
2,675,231	+				+0.3
2,675,231	+				-0.1
2,675,231	+				-0.9
2,675,231	+				-1.1
2,675,231	+				+0.0
2,675,231	+				+2.5
2,675,231	+				+1.1
2,675,231	+				-0.9
2,675,231	+				-0.1
2,675,231	+				-1.1
2,675,231	+				-0.0
2,675,231	+				+0.3
2,675,231	+				-1.8
2,675,231	+				+0.1
2,675,231	+				-2.1
2,675,231	+				+0.1
2,675,231	+				-0.2
2,675,231	+				+1.0
2,675,231	+				+1.2
2,675,231	+				+0.3
2,675,232	-				+0.3
2,675,232	-				+0.5
2,675,232	-				+0.2
2,675,232	-				-0.4
2,675,232	-				-0.0
2,675,232	-				+2.1
2,675,232	-				-0.2
2,675,232	-				-1.1
2,675,232	-				+0.1
2,675,232	-				+0.7
2,675,232	-				+0.9
2,675,232	-				+0.3
2,675,232	-				-1.6
2,675,232	-				+1.2
2,675,232	-				-1.1
2,675,232	-				-0.1
2,675,232	-				-0.8
2,675,232	-				+0.5
2,675,232	-				-0.1
2,675,232	-				-0.3
2,675,232	-				-0.2
2,675,232	-				+0.3
2,675,232	-				+0.1
2,675,232	-				-2.1
2,675,232	-				-0.3
2,675,232	-				+0.1
2,675,235	+				+0.7
2,675,300	+		DZA65_RS12495	0.12	-0.1
2,675,300	+		DZA65_RS12495	0.12	+0.5
2,675,300	+		DZA65_RS12495	0.12	-1.1
2,675,301	-		DZA65_RS12495	0.12	+0.5
2,675,301	-		DZA65_RS12495	0.12	-0.8
2,675,315	-		DZA65_RS12495	0.13	-1.3
2,675,340	+		DZA65_RS12495	0.15	-0.1
2,675,341	-		DZA65_RS12495	0.15	-2.3
2,675,359	+		DZA65_RS12495	0.17	+1.0
2,675,359	+				+0.5
2,675,360	-		DZA65_RS12495	0.17	+0.0
2,675,399	+		DZA65_RS12495	0.20	+0.5
2,675,399	+		DZA65_RS12495	0.20	-0.3
2,675,400	-		DZA65_RS12495	0.20	-1.1
2,675,400	-		DZA65_RS12495	0.20	-0.5
2,675,400	-		DZA65_RS12495	0.20	-0.8
2,675,417	+		DZA65_RS12495	0.21	+0.7
2,675,417	+		DZA65_RS12495	0.21	+0.4
2,675,418	-		DZA65_RS12495	0.21	-0.2
2,675,418	-		DZA65_RS12495	0.21	+0.2
2,675,514	+		DZA65_RS12495	0.29	-1.8
2,675,515	-		DZA65_RS12495	0.29	-0.2
2,675,559	+		DZA65_RS12495	0.32	-1.2
2,675,559	+		DZA65_RS12495	0.32	-0.6
2,675,559	+		DZA65_RS12495	0.32	+0.9
2,675,559	+		DZA65_RS12495	0.32	-1.1
2,675,559	+				+1.5
2,675,560	-		DZA65_RS12495	0.32	-1.1
2,675,560	-		DZA65_RS12495	0.32	+3.2
2,675,603	-		DZA65_RS12495	0.36	+0.5
2,675,603	-		DZA65_RS12495	0.36	-0.4
2,675,682	+		DZA65_RS12495	0.42	+2.9
2,675,682	+		DZA65_RS12495	0.42	+0.5
2,675,682	+		DZA65_RS12495	0.42	+1.8
2,675,682	+		DZA65_RS12495	0.42	+1.0
2,675,682	+		DZA65_RS12495	0.42	+0.3
2,675,682	+		DZA65_RS12495	0.42	-0.2
2,675,682	+		DZA65_RS12495	0.42	+1.3
2,675,683	-		DZA65_RS12495	0.42	-0.9
2,675,683	-		DZA65_RS12495	0.42	-0.1
2,675,683	-		DZA65_RS12495	0.42	+1.9
2,675,763	+		DZA65_RS12495	0.48	-3.1
2,675,763	+		DZA65_RS12495	0.48	-1.3
2,675,764	-		DZA65_RS12495	0.49	-2.6
2,675,764	-		DZA65_RS12495	0.49	-1.5
2,675,764	-		DZA65_RS12495	0.49	-0.5
2,675,786	+		DZA65_RS12495	0.50	-0.3
2,675,786	+		DZA65_RS12495	0.50	-0.2
2,675,800	+		DZA65_RS12495	0.51	+0.1
2,675,801	-		DZA65_RS12495	0.51	+0.7
2,675,801	-		DZA65_RS12495	0.51	+0.1
2,675,801	-		DZA65_RS12495	0.51	-0.2
2,675,801	-		DZA65_RS12495	0.51	-0.2
2,675,803	-		DZA65_RS12495	0.52	+1.1
2,675,814	+		DZA65_RS12495	0.52	-1.1
2,675,814	+		DZA65_RS12495	0.52	-0.5
2,675,815	-		DZA65_RS12495	0.53	-0.4
2,675,815	-		DZA65_RS12495	0.53	-0.5
2,675,815	-		DZA65_RS12495	0.53	+0.9