Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12365

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,639,854	-		DZA65_RS12360	0.13	+0.2
2,639,891	+		DZA65_RS12360	0.16	+0.4
2,639,891	+		DZA65_RS12360	0.16	+1.3
2,639,891	+		DZA65_RS12360	0.16	+0.8
2,639,891	+		DZA65_RS12360	0.16	-0.7
2,639,892	-		DZA65_RS12360	0.16	-0.1
2,639,892	-		DZA65_RS12360	0.16	-0.8
2,639,895	+		DZA65_RS12360	0.17	+0.4
2,639,896	-		DZA65_RS12360	0.17	+0.1
2,639,936	+		DZA65_RS12360	0.21	-2.3
2,639,936	+		DZA65_RS12360	0.21	-0.7
2,639,940	+		DZA65_RS12360	0.21	-0.9
2,639,940	+		DZA65_RS12360	0.21	-0.3
2,639,940	+		DZA65_RS12360	0.21	-0.5
2,639,940	+		DZA65_RS12360	0.21	+0.0
2,639,941	-		DZA65_RS12360	0.21	+2.1
2,640,088	+		DZA65_RS12360	0.36	-0.4
2,640,088	+		DZA65_RS12360	0.36	-0.9
2,640,157	+		DZA65_RS12360	0.43	+0.5
2,640,157	+		DZA65_RS12360	0.43	-0.1
2,640,158	-		DZA65_RS12360	0.43	+0.5
2,640,158	-		DZA65_RS12360	0.43	+2.1
2,640,274	+		DZA65_RS12360	0.55	-0.3
2,640,275	-		DZA65_RS12360	0.55	-0.7
2,640,445	+		DZA65_RS12360	0.72	+0.2
2,640,445	+		DZA65_RS12360	0.72	-0.2
2,640,445	+		DZA65_RS12360	0.72	-0.8
2,640,446	-		DZA65_RS12360	0.73	-0.5
2,640,490	+		DZA65_RS12360	0.77	-1.4
2,640,490	+		DZA65_RS12360	0.77	-0.8
2,640,490	+		DZA65_RS12360	0.77	-0.2
2,640,490	+		DZA65_RS12360	0.77	-0.1
2,640,490	+		DZA65_RS12360	0.77	-1.1
2,640,490	+		DZA65_RS12360	0.77	-0.8
2,640,490	+		DZA65_RS12360	0.77	-0.1
2,640,490	+		DZA65_RS12360	0.77	+1.3
2,640,491	-		DZA65_RS12360	0.77	+0.8
2,640,491	-		DZA65_RS12360	0.77	+0.8
2,640,491	-		DZA65_RS12360	0.77	-0.1
2,640,491	-		DZA65_RS12360	0.77	-1.1
2,640,491	-		DZA65_RS12360	0.77	-0.5
2,640,491	-		DZA65_RS12360	0.77	-0.1
2,640,491	-		DZA65_RS12360	0.77	-0.5
2,640,491	-		DZA65_RS12360	0.77	-0.2
2,640,491	-		DZA65_RS12360	0.77	-2.3
2,640,491	-		DZA65_RS12360	0.77	+0.3
2,640,491	-		DZA65_RS12360	0.77	+0.5
2,640,496	+		DZA65_RS12360	0.78	+2.3
2,640,496	+		DZA65_RS12360	0.78	-0.6
2,640,496	+		DZA65_RS12360	0.78	-1.5
2,640,496	+		DZA65_RS12360	0.78	+0.5
2,640,496	+		DZA65_RS12360	0.78	-0.1
2,640,497	-		DZA65_RS12360	0.78	+2.3
2,640,497	-		DZA65_RS12360	0.78	-1.5
2,640,497	-		DZA65_RS12360	0.78	+1.1
2,640,497	-		DZA65_RS12360	0.78	-0.5
2,640,497	-		DZA65_RS12360	0.78	-0.2
2,640,721	+				-0.9
2,640,721	+				-0.2
2,640,721	+				-0.5
2,640,721	+				+0.1
2,640,722	-				-2.1
2,640,727	+				-0.1
2,640,727	+				-0.2
2,640,727	+				+0.3
2,640,727	+				+0.3
2,640,727	+				+0.2
2,640,727	+				-0.3
2,640,727	+				-1.9
2,640,727	+				-0.7
2,640,728	-				+1.3
2,640,728	-				+0.2
2,640,728	-				+1.3
2,640,728	-				+1.3
2,640,728	-				-1.3
2,640,728	-				-0.7
2,640,728	-				+0.2
2,640,729	+				-0.1
2,640,729	+				-1.8
2,640,729	+				-1.8
2,640,730	-				+1.3
2,640,730	-				-0.5
2,640,730	-				-0.2
2,640,730	-				-2.3
2,640,730	-				-0.8
2,640,868	+				-0.5
2,640,868	+				-1.1
2,640,868	+				-0.2
2,640,868	+				+2.1
2,640,869	-				-0.4
2,640,869	-				-0.8
2,640,869	-				+0.2
2,640,869	-				-0.7
2,640,869	-				-0.1
2,640,869	-				-1.3
2,640,872	+				-0.5
2,640,872	+				+0.3
2,640,873	-				-0.6
2,641,019	-		DZA65_RS12365	0.14	+0.3
2,641,052	+		DZA65_RS12365	0.17	+1.4
2,641,147	+		DZA65_RS12365	0.23	+0.3
2,641,147	+		DZA65_RS12365	0.23	-1.0
2,641,147	+		DZA65_RS12365	0.23	-0.7
2,641,148	-		DZA65_RS12365	0.23	-1.5
2,641,162	+		DZA65_RS12365	0.24	-0.5
2,641,162	+		DZA65_RS12365	0.24	-1.1
2,641,162	+		DZA65_RS12365	0.24	-0.1
2,641,162	+		DZA65_RS12365	0.24	+0.3
2,641,162	+		DZA65_RS12365	0.24	+0.3
2,641,163	-		DZA65_RS12365	0.24	-0.4
2,641,163	-		DZA65_RS12365	0.24	-2.4
2,641,163	-		DZA65_RS12365	0.24	-1.3
2,641,188	-		DZA65_RS12365	0.25	-1.4
2,641,228	+				+0.5
2,641,229	-		DZA65_RS12365	0.28	-0.5
2,641,229	-		DZA65_RS12365	0.28	+0.3
2,641,265	+		DZA65_RS12365	0.30	+0.6
2,641,265	+		DZA65_RS12365	0.30	+1.5
2,641,265	+		DZA65_RS12365	0.30	+0.5
2,641,265	+		DZA65_RS12365	0.30	-0.7
2,641,265	+		DZA65_RS12365	0.30	-1.4
2,641,265	+		DZA65_RS12365	0.30	-1.5
2,641,265	+		DZA65_RS12365	0.30	+0.9
2,641,265	+		DZA65_RS12365	0.30	+0.3
2,641,265	+		DZA65_RS12365	0.30	+1.2
2,641,265	+		DZA65_RS12365	0.30	-0.7
2,641,265	+		DZA65_RS12365	0.30	-1.1
2,641,266	-		DZA65_RS12365	0.30	-0.3
2,641,266	-		DZA65_RS12365	0.30	+1.0
2,641,266	-		DZA65_RS12365	0.30	+0.3
2,641,266	-		DZA65_RS12365	0.30	+1.1
2,641,266	-		DZA65_RS12365	0.30	-1.5
2,641,266	-		DZA65_RS12365	0.30	-1.1
2,641,267	+		DZA65_RS12365	0.30	+0.6
2,641,267	+		DZA65_RS12365	0.30	-0.5
2,641,267	+		DZA65_RS12365	0.30	-0.6
2,641,267	+		DZA65_RS12365	0.30	-0.1
2,641,267	+		DZA65_RS12365	0.30	+0.4
2,641,267	+		DZA65_RS12365	0.30	-1.5
2,641,267	+		DZA65_RS12365	0.30	-0.8
2,641,267	+		DZA65_RS12365	0.30	-2.1
2,641,267	+		DZA65_RS12365	0.30	-0.0
2,641,267	+		DZA65_RS12365	0.30	-0.2
2,641,267	+		DZA65_RS12365	0.30	-1.5
2,641,267	+		DZA65_RS12365	0.30	+1.0
2,641,267	+		DZA65_RS12365	0.30	-1.1
2,641,267	+		DZA65_RS12365	0.30	-0.1
2,641,267	+		DZA65_RS12365	0.30	+0.0
2,641,267	+		DZA65_RS12365	0.30	-0.5
2,641,267	+		DZA65_RS12365	0.30	-0.8
2,641,267	+		DZA65_RS12365	0.30	+0.3
2,641,267	+		DZA65_RS12365	0.30	+0.1
2,641,268	-		DZA65_RS12365	0.30	-0.2
2,641,268	-		DZA65_RS12365	0.30	-0.4
2,641,268	-		DZA65_RS12365	0.30	-0.8
2,641,268	-		DZA65_RS12365	0.30	-0.3
2,641,268	-		DZA65_RS12365	0.30	+1.3
2,641,268	-		DZA65_RS12365	0.30	+0.5
2,641,268	-		DZA65_RS12365	0.30	-0.5
2,641,268	-		DZA65_RS12365	0.30	+0.8
2,641,268	-		DZA65_RS12365	0.30	-0.6
2,641,268	-		DZA65_RS12365	0.30	+0.3
2,641,268	-		DZA65_RS12365	0.30	-0.7
2,641,268	-		DZA65_RS12365	0.30	+2.8
2,641,268	-		DZA65_RS12365	0.30	-1.3
2,641,268	-		DZA65_RS12365	0.30	+0.6
2,641,268	-		DZA65_RS12365	0.30	-1.5
2,641,268	-		DZA65_RS12365	0.30	-1.2
2,641,268	-		DZA65_RS12365	0.30	+0.3
2,641,430	-		DZA65_RS12365	0.40	+1.3
2,641,435	+		DZA65_RS12365	0.41	+1.2
2,641,448	+		DZA65_RS12365	0.42	-0.3
2,641,482	-		DZA65_RS12365	0.44	-0.8
2,641,511	-		DZA65_RS12365	0.45	+0.5
2,641,720	+		DZA65_RS12365	0.59	+0.3
2,641,720	+		DZA65_RS12365	0.59	-0.3
2,641,720	+		DZA65_RS12365	0.59	+0.8
2,641,720	+		DZA65_RS12365	0.59	-0.8
2,641,720	+		DZA65_RS12365	0.59	-0.2
2,641,720	+		DZA65_RS12365	0.59	-0.1
2,641,720	+		DZA65_RS12365	0.59	-1.2
2,641,721	-		DZA65_RS12365	0.59	-0.2
2,641,741	+		DZA65_RS12365	0.60	+0.1
2,641,741	+		DZA65_RS12365	0.60	-0.6
2,641,741	+		DZA65_RS12365	0.60	-0.2
2,641,741	+		DZA65_RS12365	0.60	+0.5
2,641,742	-		DZA65_RS12365	0.60	+1.5
2,641,742	-		DZA65_RS12365	0.60	+0.2
2,641,759	+		DZA65_RS12365	0.61	-1.1
2,641,759	+		DZA65_RS12365	0.61	-1.0
2,641,760	-		DZA65_RS12365	0.61	-1.1
2,641,828	+		DZA65_RS12365	0.65	+0.0
2,641,828	+		DZA65_RS12365	0.65	-0.5
2,641,829	-		DZA65_RS12365	0.66	+0.7
2,641,858	+		DZA65_RS12365	0.67	-1.1
2,641,858	+		DZA65_RS12365	0.67	+0.2
2,641,858	+		DZA65_RS12365	0.67	+1.3
2,641,859	-		DZA65_RS12365	0.67	+0.3
2,641,859	-		DZA65_RS12365	0.67	+0.5
2,641,913	-		DZA65_RS12365	0.71	+0.7
2,641,913	-		DZA65_RS12365	0.71	-0.1
2,641,913	-		DZA65_RS12365	0.71	-0.1
2,641,946	+		DZA65_RS12365	0.73	-1.1
2,641,947	-		DZA65_RS12365	0.73	+0.3
2,641,948	+		DZA65_RS12365	0.73	+0.9
2,641,948	+		DZA65_RS12365	0.73	-0.5
2,641,948	+				-0.5
2,641,949	-		DZA65_RS12365	0.73	-1.1
2,642,009	-		DZA65_RS12365	0.77	+0.7
2,642,009	-		DZA65_RS12365	0.77	-1.8
2,642,009	-		DZA65_RS12365	0.77	-1.9
2,642,101	+		DZA65_RS12365	0.83	+0.4
2,642,101	+		DZA65_RS12365	0.83	-1.5
2,642,102	-		DZA65_RS12365	0.83	-1.1
2,642,170	+				+2.1
2,642,170	+		DZA65_RS12365	0.87	-0.3
2,642,210	+		DZA65_RS12365	0.90	-1.2
2,642,210	+		DZA65_RS12365	0.90	-0.5
2,642,210	+		DZA65_RS12365	0.90	-0.4
2,642,211	-		DZA65_RS12365	0.90	-0.1
2,642,529	+				-1.3
2,642,529	+				+0.5
2,642,529	+				-0.7
2,642,529	+				+0.4
2,642,529	+				+0.2
2,642,529	+				-0.3
2,642,530	-				+1.5
2,642,530	-				+1.1
2,642,530	-				+0.4
2,642,530	-				-1.7
2,642,530	-				-0.7
2,642,530	-				-1.8
2,642,530	-				-0.3
2,642,530	-				-2.3
2,642,593	-				-1.8
2,642,593	-				+0.1
2,642,593	-				-0.3
2,642,618	+				-0.3
2,642,671	-				-1.2
2,642,671	-				+0.0
2,642,672	+				-0.8
2,642,672	+				+0.8
2,642,672	+				-0.1
2,642,672	+				-0.8
2,642,672	+				-0.5
2,642,672	+				+1.3
2,642,672	+				-0.5
2,642,672	+				-0.9
2,642,672	+				-0.8
2,642,672	+				+0.8
2,642,673	-				-0.2
2,642,673	-				-0.2
2,642,673	-				+0.9
2,642,673	-				+0.0
2,642,673	-				-1.2
2,642,673	-				+0.2
2,642,673	-				+0.5
2,642,673	-				-1.1
2,642,714	+				+0.5
2,642,714	+				-0.9
2,642,715	-				+0.5
2,642,715	-				-0.1
2,642,715	-				-0.9
2,642,746	+				-0.6
2,642,746	+				+0.5
2,642,777	+				-1.2
2,642,777	+				-1.1
2,642,777	+				-0.3
2,642,792	+				+1.1
2,642,792	+				+0.8
2,642,883	+				+0.9
2,642,893	-				+0.7
2,642,893	-				-0.5
2,642,908	+				-2.1
2,642,908	+				-0.3
2,642,908	+				+0.5
2,642,909	-		DZA65_RS12370	0.10	-0.1
2,642,909	-		DZA65_RS12370	0.10	+0.5
2,642,909	-		DZA65_RS12370	0.10	-2.1
2,642,909	-		DZA65_RS12370	0.10	+0.5
2,642,909	-		DZA65_RS12370	0.10	-1.5
2,642,912	-		DZA65_RS12370	0.10	-0.6
2,642,945	-		DZA65_RS12370	0.13	-0.6
2,642,965	-		DZA65_RS12370	0.15	+0.7
2,642,965	-		DZA65_RS12370	0.15	-1.7
2,643,006	+		DZA65_RS12370	0.18	-0.5
2,643,006	+		DZA65_RS12370	0.18	+1.5
2,643,006	+		DZA65_RS12370	0.18	-0.5
2,643,007	-		DZA65_RS12370	0.18	-1.2
2,643,059	+		DZA65_RS12370	0.23	-1.0
2,643,065	-		DZA65_RS12370	0.23	-0.6
2,643,180	+		DZA65_RS12370	0.33	-0.8
2,643,181	-		DZA65_RS12370	0.33	+0.3
2,643,181	-		DZA65_RS12370	0.33	+0.4
2,643,181	-		DZA65_RS12370	0.33	+1.2