Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11905

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,541,028	+		DZA65_RS11895	0.61	-0.8
2,541,133	+		DZA65_RS11895	0.69	-1.7
2,541,281	-		DZA65_RS11895	0.81	+1.0
2,541,286	+		DZA65_RS11895	0.81	+2.1
2,541,286	+		DZA65_RS11895	0.81	-3.0
2,541,286	+		DZA65_RS11895	0.81	-1.1
2,541,287	-		DZA65_RS11895	0.82	+0.5
2,541,287	-		DZA65_RS11895	0.82	-0.0
2,541,287	-		DZA65_RS11895	0.82	+0.1
2,541,293	+		DZA65_RS11895	0.82	-0.0
2,541,296	-		DZA65_RS11895	0.82	-0.9
2,541,296	-		DZA65_RS11895	0.82	-0.6
2,541,323	+		DZA65_RS11895	0.84	+1.1
2,541,323	+		DZA65_RS11895	0.84	-0.5
2,541,324	-		DZA65_RS11895	0.84	+0.7
2,541,324	-		DZA65_RS11895	0.84	-0.1
2,541,324	-		DZA65_RS11895	0.84	+0.5
2,541,324	-		DZA65_RS11895	0.84	+1.3
2,541,324	-		DZA65_RS11895	0.84	-1.3
2,541,425	+				+0.2
2,541,425	+				+0.2
2,541,425	+				+0.8
2,541,426	-				+0.1
2,541,426	-				-1.5
2,541,455	+				-1.3
2,541,455	+				-0.1
2,541,456	-				-0.2
2,541,456	-				+0.5
2,541,489	+				+0.2
2,541,489	+				+0.0
2,541,490	-				+0.1
2,541,490	-				+0.5
2,541,490	-				+0.1
2,541,490	-				+1.1
2,541,509	+				+0.7
2,541,510	-				-0.1
2,541,510	-				-1.1
2,541,541	+				+0.2
2,541,541	+				+0.9
2,541,541	+				+2.3
2,541,541	+				-0.5
2,541,542	-				-0.1
2,541,553	+				-0.1
2,541,553	+				+1.2
2,541,554	-				+0.7
2,541,557	+				-0.3
2,541,558	-				-0.4
2,541,558	-				+0.1
2,541,558	-				+0.8
2,541,558	-				-0.0
2,541,558	-				+0.9
2,541,577	+				-1.0
2,541,577	+				-3.4
2,541,577	+				+0.4
2,541,597	+				+0.9
2,541,669	+				-1.8
2,541,669	+				-0.1
2,541,670	-				-2.3
2,541,778	+				+0.9
2,541,778	+				-0.9
2,541,779	-				+0.5
2,541,779	-				+1.5
2,541,779	-				+0.6
2,541,781	+				+1.6
2,541,798	-		DZA65_RS11900	0.15	-0.7
2,541,979	-				-0.0
2,542,025	+				+1.0
2,542,026	-				-0.7
2,542,047	+				-0.8
2,542,047	+				+0.8
2,542,133	+				-1.0
2,542,150	-				-0.2
2,542,166	+				-0.7
2,542,167	-				-2.7
2,542,185	+				+0.0
2,542,185	+				+0.3
2,542,185	+				+1.1
2,542,185	+				+2.1
2,542,186	-				-0.7
2,542,187	+				+0.5
2,542,200	+				+0.5
2,542,200	+				-1.3
2,542,201	-				-0.1
2,542,280	+		DZA65_RS11905	0.11	+0.8
2,542,280	+		DZA65_RS11905	0.11	+0.9
2,542,280	+		DZA65_RS11905	0.11	+0.5
2,542,280	+		DZA65_RS11905	0.11	+0.9
2,542,280	+		DZA65_RS11905	0.11	-1.3
2,542,280	+		DZA65_RS11905	0.11	-1.2
2,542,281	-		DZA65_RS11905	0.11	+0.7
2,542,301	+		DZA65_RS11905	0.12	-0.5
2,542,302	-		DZA65_RS11905	0.12	-1.5
2,542,302	-		DZA65_RS11905	0.12	-0.5
2,542,302	-		DZA65_RS11905	0.12	+0.6
2,542,339	-		DZA65_RS11905	0.14	-1.5
2,542,468	-		DZA65_RS11905	0.19	-0.7
2,542,488	+		DZA65_RS11905	0.20	+1.1
2,542,560	-		DZA65_RS11905	0.23	+2.4
2,542,612	+		DZA65_RS11905	0.25	-0.7
2,542,612	+		DZA65_RS11905	0.25	+1.1
2,542,613	-		DZA65_RS11905	0.25	+0.8
2,542,664	-		DZA65_RS11905	0.28	-1.0
2,542,750	-		DZA65_RS11905	0.31	+0.7
2,542,862	+		DZA65_RS11905	0.36	-0.0
2,542,961	+		DZA65_RS11905	0.40	-0.7
2,542,961	+		DZA65_RS11905	0.40	-0.5
2,542,962	-				+0.5
2,542,977	+		DZA65_RS11905	0.41	+1.3
2,542,977	+		DZA65_RS11905	0.41	+1.7
2,543,021	+		DZA65_RS11905	0.43	-0.7
2,543,021	+		DZA65_RS11905	0.43	-1.8
2,543,021	+		DZA65_RS11905	0.43	-0.8
2,543,022	-		DZA65_RS11905	0.43	+0.9
2,543,022	-		DZA65_RS11905	0.43	-0.1
2,543,022	-		DZA65_RS11905	0.43	-0.3
2,543,022	-		DZA65_RS11905	0.43	-1.8
2,543,022	-		DZA65_RS11905	0.43	-0.2
2,543,050	-		DZA65_RS11905	0.44	-3.3
2,543,050	-		DZA65_RS11905	0.44	-0.3
2,543,163	+				-0.5
2,543,223	-		DZA65_RS11905	0.52	-0.4
2,543,255	+		DZA65_RS11905	0.53	+0.9
2,543,255	+		DZA65_RS11905	0.53	+0.2
2,543,255	+		DZA65_RS11905	0.53	-0.5
2,543,255	+		DZA65_RS11905	0.53	+0.5
2,543,256	-		DZA65_RS11905	0.53	+0.4
2,543,256	-		DZA65_RS11905	0.53	-0.4
2,543,256	-				-0.1
2,543,256	-		DZA65_RS11905	0.53	+0.2
2,543,256	-		DZA65_RS11905	0.53	+0.1
2,543,278	-		DZA65_RS11905	0.54	+0.3
2,543,459	+		DZA65_RS11905	0.62	+0.5
2,543,459	+		DZA65_RS11905	0.62	-0.1
2,543,459	+		DZA65_RS11905	0.62	-0.4
2,543,459	+		DZA65_RS11905	0.62	-0.2
2,543,459	+		DZA65_RS11905	0.62	+2.7
2,543,459	+		DZA65_RS11905	0.62	-0.2
2,543,459	+		DZA65_RS11905	0.62	-0.5
2,543,460	-		DZA65_RS11905	0.62	-0.0
2,543,460	-		DZA65_RS11905	0.62	+0.5
2,543,460	-		DZA65_RS11905	0.62	-0.1
2,543,460	-		DZA65_RS11905	0.62	+0.2
2,543,460	-		DZA65_RS11905	0.62	-0.0
2,543,460	-		DZA65_RS11905	0.62	+0.1
2,543,460	-		DZA65_RS11905	0.62	-0.5
2,543,520	+		DZA65_RS11905	0.64	-1.1
2,543,614	-		DZA65_RS11905	0.68	-2.0
2,543,630	+		DZA65_RS11905	0.69	+0.1
2,543,630	+		DZA65_RS11905	0.69	-1.1
2,543,631	-		DZA65_RS11905	0.69	+0.5
2,543,739	-		DZA65_RS11905	0.74	+1.2
2,543,814	-		DZA65_RS11905	0.77	-0.3
2,544,018	+		DZA65_RS11905	0.86	+1.2
2,544,018	+		DZA65_RS11905	0.86	-1.1
2,544,019	-		DZA65_RS11905	0.86	+0.1
2,544,041	+		DZA65_RS11905	0.87	-2.3
2,544,041	+		DZA65_RS11905	0.87	+1.0
2,544,042	-		DZA65_RS11905	0.87	-0.0
2,544,111	-		DZA65_RS11905	0.90	-0.4
2,544,111	-		DZA65_RS11905	0.90	+1.4
2,544,111	-		DZA65_RS11905	0.90	+0.5
2,544,111	-		DZA65_RS11905	0.90	-0.0
2,544,164	+				-1.1
2,544,190	+				-0.9
2,544,190	+				-1.0
2,544,191	-				+0.6
2,544,213	-				+0.2
2,544,331	+				+0.1
2,544,332	-				+0.5
2,544,342	+				-1.5
2,544,343	-				+1.6
2,544,348	+				+0.3
2,544,359	+				-0.6
2,544,360	-				+0.8
2,544,372	+				-2.1
2,544,373	-				-0.8
2,544,650	+				+1.1
2,544,664	+				-2.1
2,544,664	+				+1.5
2,544,679	-				-1.4
2,544,693	+				+0.0
2,544,693	+				-0.3
2,544,694	-				-2.3
2,544,709	-				-0.4
2,544,738	+				-0.0
2,544,738	+				-0.3
2,544,738	+				-0.2
2,544,738	+				+0.7
2,544,739	-				+0.3
2,544,739	-				-0.8
2,544,739	-				+0.3
2,544,739	-				-0.1
2,544,739	-				+0.5
2,544,739	-				+0.3
2,544,759	+				+0.0
2,544,759	+				+0.5
2,544,759	+				-0.3
2,544,869	+		DZA65_RS11915	0.46	-0.7
2,544,870	-		DZA65_RS11915	0.47	+1.5
2,544,958	+		DZA65_RS11915	0.83	-1.0
2,544,959	-		DZA65_RS11915	0.84	-1.1
2,544,997	+				+0.5
2,545,065	+				-0.8
2,545,065	+				-0.1
2,545,066	-				+1.2
2,545,066	-				+0.2
2,545,084	+				+0.9
2,545,085	-				-2.1
2,545,155	-				-0.3
2,545,155	-				-1.6
2,545,169	+				-1.0
2,545,169	+				+0.5
2,545,170	-				+0.6
2,545,170	-				-0.5
2,545,228	+				-0.3
2,545,228	+				+0.7
2,545,228	+				-2.1
2,545,228	+				-0.0
2,545,228	+				-0.5
2,545,228	+				-0.2
2,545,228	+				+0.5
2,545,229	-				-0.9
2,545,229	-				+0.1
2,545,229	-				-0.1
2,545,229	-				+1.1
2,545,282	-				-1.4
2,545,316	-				-0.3
2,545,322	+				+0.2
2,545,322	+				-0.4
2,545,323	-				-1.1
2,545,323	-				+0.5
2,545,328	-				-2.3