Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11540

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,464,729	+		DZA65_RS11535	0.33	-1.3
2,464,740	+		DZA65_RS11535	0.34	-3.0
2,464,740	+		DZA65_RS11535	0.34	+0.5
2,464,741	-		DZA65_RS11535	0.34	-1.1
2,464,741	-		DZA65_RS11535	0.34	+0.5
2,464,741	-		DZA65_RS11535	0.34	-0.3
2,464,809	+		DZA65_RS11535	0.40	-0.5
2,464,809	+		DZA65_RS11535	0.40	-0.0
2,464,809	+		DZA65_RS11535	0.40	+0.2
2,464,809	+		DZA65_RS11535	0.40	-0.5
2,464,809	+		DZA65_RS11535	0.40	-0.2
2,464,809	+		DZA65_RS11535	0.40	-0.3
2,464,809	+		DZA65_RS11535	0.40	+0.2
2,464,809	+		DZA65_RS11535	0.40	-0.1
2,464,809	+		DZA65_RS11535	0.40	+0.5
2,464,809	+		DZA65_RS11535	0.40	+1.9
2,464,809	+		DZA65_RS11535	0.40	-0.3
2,464,810	-		DZA65_RS11535	0.40	-0.1
2,464,810	-		DZA65_RS11535	0.40	-1.1
2,464,810	-		DZA65_RS11535	0.40	-0.5
2,464,810	-		DZA65_RS11535	0.40	-0.0
2,464,810	-		DZA65_RS11535	0.40	-0.5
2,464,810	-		DZA65_RS11535	0.40	+0.5
2,464,810	-		DZA65_RS11535	0.40	+0.7
2,464,810	-		DZA65_RS11535	0.40	-0.5
2,464,810	-		DZA65_RS11535	0.40	-0.3
2,464,810	-		DZA65_RS11535	0.40	+0.3
2,464,810	-		DZA65_RS11535	0.40	-2.0
2,464,810	-		DZA65_RS11535	0.40	+0.9
2,464,884	+		DZA65_RS11535	0.47	-0.5
2,464,884	+		DZA65_RS11535	0.47	-0.0
2,464,924	-		DZA65_RS11535	0.50	-0.5
2,464,956	+		DZA65_RS11535	0.53	+0.1
2,464,956	+		DZA65_RS11535	0.53	+0.2
2,464,974	-		DZA65_RS11535	0.55	+0.8
2,464,974	-		DZA65_RS11535	0.55	+1.9
2,464,977	+		DZA65_RS11535	0.55	+0.8
2,465,022	+		DZA65_RS11535	0.59	-2.5
2,465,022	+		DZA65_RS11535	0.59	+1.0
2,465,026	+		DZA65_RS11535	0.59	-1.0
2,465,027	-		DZA65_RS11535	0.59	+0.1
2,465,036	+		DZA65_RS11535	0.60	+0.8
2,465,036	+		DZA65_RS11535	0.60	+0.8
2,465,037	-		DZA65_RS11535	0.60	-0.7
2,465,070	+		DZA65_RS11535	0.63	+2.5
2,465,071	-		DZA65_RS11535	0.63	+0.1
2,465,071	-		DZA65_RS11535	0.63	-1.8
2,465,220	+		DZA65_RS11535	0.76	-0.2
2,465,278	+		DZA65_RS11535	0.82	-0.6
2,465,282	+				-0.1
2,465,283	-		DZA65_RS11535	0.82	+0.7
2,465,308	-		DZA65_RS11535	0.84	+1.0
2,465,315	+		DZA65_RS11535	0.85	+2.8
2,465,315	+		DZA65_RS11535	0.85	+0.1
2,465,316	-		DZA65_RS11535	0.85	-0.0
2,465,325	+		DZA65_RS11535	0.86	+0.5
2,465,325	+		DZA65_RS11535	0.86	-0.4
2,465,326	-		DZA65_RS11535	0.86	-0.5
2,465,326	-		DZA65_RS11535	0.86	-0.0
2,465,409	+				-0.5
2,465,410	-				-1.5
2,465,481	+				+0.1
2,465,481	+				-0.3
2,465,481	+				-0.3
2,465,482	-				-1.6
2,465,482	-				+1.9
2,465,493	+				-1.5
2,465,493	+				+0.2
2,465,493	+				+0.3
2,465,493	+				+0.2
2,465,493	+				+0.5
2,465,493	+				-0.5
2,465,493	+				-0.8
2,465,493	+				-0.7
2,465,493	+				-0.0
2,465,494	-				-0.4
2,465,494	-				-0.5
2,465,494	-				-0.1
2,465,494	-				+1.0
2,465,494	-				+0.2
2,465,526	-				+0.2
2,465,734	+				-1.5
2,465,734	+				+0.0
2,465,735	-				+0.8
2,465,759	+		DZA65_RS11540	0.10	-0.1
2,465,770	+		DZA65_RS11540	0.11	-3.0
2,465,771	-		DZA65_RS11540	0.11	+0.7
2,465,818	+		DZA65_RS11540	0.15	+1.2
2,465,989	-		DZA65_RS11540	0.29	+1.2
2,465,989	-		DZA65_RS11540	0.29	-0.0
2,465,989	-		DZA65_RS11540	0.29	-0.3
2,465,989	-		DZA65_RS11540	0.29	+1.1
2,465,990	+		DZA65_RS11540	0.29	-2.1
2,465,990	+		DZA65_RS11540	0.29	-1.5
2,465,990	+		DZA65_RS11540	0.29	+2.3
2,465,991	-		DZA65_RS11540	0.29	+0.3
2,465,991	-		DZA65_RS11540	0.29	+0.5
2,465,991	-		DZA65_RS11540	0.29	+0.7
2,465,991	-				-0.5
2,466,082	-		DZA65_RS11540	0.36	+0.2
2,466,114	-		DZA65_RS11540	0.39	-1.7
2,466,134	+		DZA65_RS11540	0.40	-1.7
2,466,134	+		DZA65_RS11540	0.40	-0.5
2,466,135	-		DZA65_RS11540	0.40	-0.8
2,466,167	+		DZA65_RS11540	0.43	-0.5
2,466,167	+		DZA65_RS11540	0.43	+1.5
2,466,167	+		DZA65_RS11540	0.43	+0.2
2,466,167	+		DZA65_RS11540	0.43	+0.2
2,466,168	-		DZA65_RS11540	0.43	-0.4
2,466,168	-		DZA65_RS11540	0.43	-0.2
2,466,168	-		DZA65_RS11540	0.43	-0.0
2,466,193	+		DZA65_RS11540	0.45	-0.5
2,466,193	+		DZA65_RS11540	0.45	-0.3
2,466,193	+		DZA65_RS11540	0.45	+0.5
2,466,193	+		DZA65_RS11540	0.45	-0.2
2,466,194	-		DZA65_RS11540	0.45	-0.1
2,466,194	-		DZA65_RS11540	0.45	-0.3
2,466,194	-		DZA65_RS11540	0.45	+0.3
2,466,194	-		DZA65_RS11540	0.45	-0.8
2,466,232	+		DZA65_RS11540	0.48	-0.5
2,466,390	-		DZA65_RS11540	0.61	-1.1
2,466,390	-		DZA65_RS11540	0.61	-0.2
2,466,434	+		DZA65_RS11540	0.64	+0.9
2,466,434	+		DZA65_RS11540	0.64	-0.9
2,466,434	+		DZA65_RS11540	0.64	-1.1
2,466,434	+		DZA65_RS11540	0.64	-0.5
2,466,435	-		DZA65_RS11540	0.64	-1.5
2,466,435	-		DZA65_RS11540	0.64	-0.1
2,466,435	-		DZA65_RS11540	0.64	-0.7
2,466,435	-		DZA65_RS11540	0.64	-1.6
2,466,441	-		DZA65_RS11540	0.65	+0.9
2,466,507	+		DZA65_RS11540	0.70	-0.3
2,466,508	-		DZA65_RS11540	0.70	+1.1
2,466,540	-		DZA65_RS11540	0.73	-1.1
2,466,540	-		DZA65_RS11540	0.73	+1.2
2,466,827	+				+0.4
2,466,828	-				-1.6
2,466,850	-				-0.9
2,466,921	-				-0.5
2,466,921	-				+0.7
2,466,937	+				-0.2
2,466,941	+				+1.5
2,466,941	+				+0.9
2,466,942	-				-1.8
2,466,942	-				+0.8
2,466,942	-				-0.3
2,466,949	+				-0.3
2,466,950	-				+0.5
2,466,957	+				+1.1
2,466,958	-				-0.8
2,466,976	+				+0.3
2,466,976	+				+0.9
2,466,977	-				-0.1
2,466,996	+				-0.7
2,466,997	-				-1.4
2,466,998	+				+0.2
2,466,998	+				-0.0
2,466,998	+				-1.1
2,466,998	+				-0.4
2,466,998	+				-1.1
2,466,998	+				+0.2
2,466,998	+				+0.3
2,466,999	-				+0.4
2,467,009	+				-0.5
2,467,009	+				+0.1
2,467,010	-				-1.1
2,467,010	-				+0.5
2,467,010	-				+0.7
2,467,013	-				+1.1
2,467,036	+				-0.2
2,467,036	+				-0.7
2,467,036	+				+0.5
2,467,036	+				-2.3
2,467,036	+				+0.5
2,467,037	-				+0.5
2,467,037	-				+1.1
2,467,139	+				+0.8
2,467,140	-				-0.1
2,467,145	+				+1.3
2,467,145	+				-0.5
2,467,145	+				-0.6
2,467,145	+				+0.7
2,467,149	+				-0.1
2,467,177	+				+2.2
2,467,177	+				-0.5
2,467,177	+				+0.3
2,467,179	+				-0.3
2,467,179	+				+0.5
2,467,179	+				-0.7
2,467,179	+				-0.7
2,467,179	+				-0.5
2,467,179	+				+0.7
2,467,179	+				+0.9
2,467,180	-				+3.1
2,467,180	-				-1.1
2,467,180	-				+0.5
2,467,180	-				+0.7
2,467,201	+				+0.4
2,467,201	+				-1.8
2,467,201	+				+0.5
2,467,201	+				+0.2
2,467,202	-				-0.3
2,467,202	-				-0.5
2,467,202	-				+0.3
2,467,202	-				-0.3
2,467,202	-				-0.8
2,467,202	-				+2.1
2,467,202	-				-0.9
2,467,202	-				-0.5
2,467,280	+				+0.2
2,467,280	+				-0.6
2,467,280	+				-0.3
2,467,280	+				+1.1
2,467,280	+				+0.5
2,467,281	-				-1.1
2,467,313	+				-0.1
2,467,313	+				-1.1
2,467,314	-				-2.8
2,467,328	+				+0.5
2,467,403	+		DZA65_RS11545	0.13	-1.1
2,467,403	+		DZA65_RS11545	0.13	+0.2
2,467,403	+		DZA65_RS11545	0.13	+0.6
2,467,403	+		DZA65_RS11545	0.13	-1.0
2,467,403	+		DZA65_RS11545	0.13	-1.1
2,467,403	+		DZA65_RS11545	0.13	+0.3
2,467,403	+				+0.5
2,467,404	-		DZA65_RS11545	0.14	-0.3
2,467,405	+		DZA65_RS11545	0.14	+0.3
2,467,406	-		DZA65_RS11545	0.14	+0.3
2,467,406	-		DZA65_RS11545	0.14	+1.1
2,467,406	-		DZA65_RS11545	0.14	+0.2
2,467,451	+		DZA65_RS11545	0.17	-1.1
2,467,451	+		DZA65_RS11545	0.17	+0.6
2,467,451	+		DZA65_RS11545	0.17	+2.1
2,467,451	+		DZA65_RS11545	0.17	-0.7
2,467,452	-		DZA65_RS11545	0.17	-0.3
2,467,452	-		DZA65_RS11545	0.17	-0.8
2,467,452	-		DZA65_RS11545	0.17	+2.0
2,467,452	-		DZA65_RS11545	0.17	-1.8
2,467,602	-		DZA65_RS11545	0.26	-0.1
2,467,643	+		DZA65_RS11545	0.29	-0.1
2,467,643	+		DZA65_RS11545	0.29	-0.1
2,467,643	+		DZA65_RS11545	0.29	+1.1
2,467,643	+		DZA65_RS11545	0.29	+0.5
2,467,644	-		DZA65_RS11545	0.29	-0.4
2,467,664	+		DZA65_RS11545	0.30	+0.5
2,467,665	-		DZA65_RS11545	0.31	+0.3
2,467,665	-		DZA65_RS11545	0.31	-2.3
2,467,665	-		DZA65_RS11545	0.31	+0.8
2,467,665	-		DZA65_RS11545	0.31	-0.3
2,467,665	-		DZA65_RS11545	0.31	+3.6
2,467,665	-		DZA65_RS11545	0.31	+0.7
2,467,665	-		DZA65_RS11545	0.31	+0.7
2,467,742	+		DZA65_RS11545	0.36	-2.5
2,467,742	+		DZA65_RS11545	0.36	+0.8
2,467,758	-		DZA65_RS11545	0.37	+0.7
2,467,759	+		DZA65_RS11545	0.37	+0.1
2,467,760	-		DZA65_RS11545	0.37	-0.0
2,467,821	-		DZA65_RS11545	0.41	-0.8
2,467,836	+		DZA65_RS11545	0.42	+0.2
2,467,837	-		DZA65_RS11545	0.42	+0.7
2,467,837	-		DZA65_RS11545	0.42	-3.0
2,467,837	-		DZA65_RS11545	0.42	+0.2
2,467,837	-		DZA65_RS11545	0.42	-0.2