Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11245

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,383,934	+		DZA65_RS11240	0.34	+0.1
2,383,934	+		DZA65_RS11240	0.34	-0.0
2,383,934	+		DZA65_RS11240	0.34	-2.1
2,383,934	+		DZA65_RS11240	0.34	+0.6
2,383,934	+		DZA65_RS11240	0.34	+0.6
2,383,935	-		DZA65_RS11240	0.34	+0.2
2,383,935	-		DZA65_RS11240	0.34	+1.2
2,383,935	-		DZA65_RS11240	0.34	+1.5
2,384,038	-		DZA65_RS11240	0.42	-0.3
2,384,063	+		DZA65_RS11240	0.44	-0.2
2,384,064	-		DZA65_RS11240	0.44	-1.5
2,384,080	+		DZA65_RS11240	0.46	-0.1
2,384,081	-		DZA65_RS11240	0.46	-0.2
2,384,181	+		DZA65_RS11240	0.53	+1.5
2,384,181	+		DZA65_RS11240	0.53	+1.0
2,384,181	+		DZA65_RS11240	0.53	-1.0
2,384,181	+		DZA65_RS11240	0.53	-0.2
2,384,181	+		DZA65_RS11240	0.53	-0.7
2,384,181	+		DZA65_RS11240	0.53	+0.8
2,384,181	+		DZA65_RS11240	0.53	-1.4
2,384,181	+		DZA65_RS11240	0.53	+0.3
2,384,181	+				+0.5
2,384,181	+		DZA65_RS11240	0.53	+0.1
2,384,182	-		DZA65_RS11240	0.54	-0.8
2,384,182	-		DZA65_RS11240	0.54	+0.4
2,384,182	-		DZA65_RS11240	0.54	-0.9
2,384,182	-		DZA65_RS11240	0.54	+1.3
2,384,182	-		DZA65_RS11240	0.54	+0.0
2,384,182	-		DZA65_RS11240	0.54	+1.1
2,384,182	-		DZA65_RS11240	0.54	-1.7
2,384,182	-		DZA65_RS11240	0.54	-1.7
2,384,182	-		DZA65_RS11240	0.54	-1.5
2,384,182	-		DZA65_RS11240	0.54	-1.0
2,384,182	-		DZA65_RS11240	0.54	+0.1
2,384,185	+		DZA65_RS11240	0.54	-1.5
2,384,185	+		DZA65_RS11240	0.54	-0.5
2,384,186	-		DZA65_RS11240	0.54	+0.9
2,384,354	+		DZA65_RS11240	0.67	-0.6
2,384,354	+		DZA65_RS11240	0.67	+0.8
2,384,354	+		DZA65_RS11240	0.67	+1.1
2,384,354	+		DZA65_RS11240	0.67	-0.5
2,384,354	+		DZA65_RS11240	0.67	+1.8
2,384,354	+		DZA65_RS11240	0.67	-1.8
2,384,354	+		DZA65_RS11240	0.67	-0.1
2,384,355	-		DZA65_RS11240	0.67	+0.1
2,384,355	-		DZA65_RS11240	0.67	+0.6
2,384,355	-		DZA65_RS11240	0.67	+0.2
2,384,355	-		DZA65_RS11240	0.67	+0.4
2,384,490	+		DZA65_RS11240	0.77	+1.2
2,384,490	+		DZA65_RS11240	0.77	+0.7
2,384,490	+		DZA65_RS11240	0.77	+0.5
2,384,491	-		DZA65_RS11240	0.77	-0.2
2,384,491	-		DZA65_RS11240	0.77	+0.4
2,384,816	+				+0.2
2,384,816	+				-0.1
2,384,816	+				-1.1
2,384,817	-				+1.4
2,384,817	-				-2.1
2,384,817	-				+1.3
2,384,817	-				+0.6
2,384,818	+				-2.0
2,384,819	-				-1.5
2,384,819	-				+0.5
2,384,819	-				+0.8
2,384,824	+				+0.5
2,385,130	+		DZA65_RS11245	0.16	+0.2
2,385,130	+		DZA65_RS11245	0.16	+1.8
2,385,130	+		DZA65_RS11245	0.16	+0.8
2,385,131	-		DZA65_RS11245	0.16	+0.5
2,385,131	-		DZA65_RS11245	0.16	+0.3
2,385,131	-		DZA65_RS11245	0.16	-0.1
2,385,131	-		DZA65_RS11245	0.16	+0.3
2,385,208	+		DZA65_RS11245	0.21	+0.5
2,385,324	-		DZA65_RS11245	0.28	-2.1
2,385,349	+		DZA65_RS11245	0.29	+1.6
2,385,350	-		DZA65_RS11245	0.29	-2.1
2,385,528	-		DZA65_RS11245	0.39	+0.7
2,385,820	-		DZA65_RS11245	0.56	+1.0
2,385,827	+		DZA65_RS11245	0.57	+1.5
2,385,835	+		DZA65_RS11245	0.57	-1.7
2,385,835	+		DZA65_RS11245	0.57	-1.5
2,385,836	-		DZA65_RS11245	0.57	-0.9
2,385,893	+		DZA65_RS11245	0.61	+0.8
2,385,893	+		DZA65_RS11245	0.61	+0.5
2,385,894	-		DZA65_RS11245	0.61	+0.2
2,386,120	-		DZA65_RS11245	0.74	-0.7
2,386,120	-		DZA65_RS11245	0.74	+0.7
2,386,334	+		DZA65_RS11245	0.86	+0.7
2,386,334	+		DZA65_RS11245	0.86	+0.8
2,386,335	-		DZA65_RS11245	0.86	-0.0
2,386,359	-		DZA65_RS11245	0.88	-0.2
2,386,404	+				+0.0
2,386,404	+				-0.3
2,386,405	-				-0.3
2,386,405	-				+1.3
2,386,406	+				-0.2
2,386,406	+				+0.5
2,386,406	+				-0.4
2,386,407	-				-0.9
2,386,407	-				+0.8
2,386,435	+				-0.0
2,386,435	+				-0.8
2,386,435	+				-0.1
2,386,435	+				+0.5
2,386,448	+				-0.4
2,386,448	+				-0.7
2,386,448	+				+0.2
2,386,448	+				+0.2
2,386,448	+				-0.1
2,386,448	+				+0.0
2,386,448	+				+0.9
2,386,448	+				+0.9
2,386,448	+				-1.1
2,386,448	+				-0.5
2,386,448	+				+0.7
2,386,448	+				+0.8
2,386,448	+				-0.4
2,386,448	+				+0.2
2,386,448	+				+0.3
2,386,448	+				-1.2
2,386,448	+				-1.5
2,386,448	+				+0.5
2,386,448	+				-0.1
2,386,448	+				+0.2
2,386,448	+				+0.8
2,386,448	+				-0.5
2,386,448	+				-0.4
2,386,448	+				-0.5
2,386,449	-				+0.2
2,386,449	-				+0.1
2,386,449	-				+0.2
2,386,449	-				+0.2
2,386,449	-				+0.2
2,386,449	-				+1.4
2,386,449	-				+0.5
2,386,449	-				-1.1
2,386,449	-				-0.5
2,386,449	-				+0.3
2,386,449	-				+1.1
2,386,449	-				-0.5
2,386,449	-				+0.5
2,386,449	-				+0.5
2,386,449	-				+0.5
2,386,450	+				+0.2
2,386,450	+				-0.3
2,386,450	+				-1.5
2,386,450	+				-0.5
2,386,450	+				-0.5
2,386,450	+				-1.8
2,386,450	+				-0.5
2,386,450	+				-0.8
2,386,450	+				+1.7
2,386,450	+				+1.0
2,386,451	-				+0.2
2,386,451	-				-0.5
2,386,451	-				-0.8
2,386,451	-				-0.2
2,386,451	-				-2.0
2,386,451	-				+0.1
2,386,451	-				-1.4
2,386,451	-				-0.8
2,386,451	-				+0.8
2,386,451	-				-0.8
2,386,451	-				-1.2
2,386,451	-				+0.5
2,386,451	-				+0.1
2,386,452	+				-1.8
2,386,452	+				+0.5
2,386,452	+				-1.5
2,386,453	-				-0.5
2,386,453	-				+1.5
2,386,635	+		DZA65_RS11250	0.14	-1.6
2,386,635	+		DZA65_RS11250	0.14	-0.1
2,386,636	-		DZA65_RS11250	0.14	+0.3
2,386,636	-		DZA65_RS11250	0.14	-1.4
2,386,636	-		DZA65_RS11250	0.14	-0.3
2,386,636	-		DZA65_RS11250	0.14	-1.0
2,386,636	-		DZA65_RS11250	0.14	-0.2
2,386,636	-		DZA65_RS11250	0.14	-0.9
2,386,636	-		DZA65_RS11250	0.14	-0.4
2,386,636	-		DZA65_RS11250	0.14	+0.5
2,386,636	-		DZA65_RS11250	0.14	+0.5
2,386,644	-		DZA65_RS11250	0.17	-0.0
2,386,902	+				+0.5
2,386,902	+				-0.1
2,386,902	+				+1.5
2,386,903	-				+0.3
2,386,903	-				+0.3
2,386,903	-				-0.9
2,386,903	-				-2.5
2,386,903	-				-1.3
2,386,918	+				-0.4
2,386,939	-				-0.6
2,386,956	+				+0.3
2,386,956	+				-0.1
2,387,106	-				+0.9
2,387,123	+				-1.5
2,387,124	-				+0.3
2,387,193	+		DZA65_RS22890	0.16	-0.5
2,387,193	+		DZA65_RS22890	0.16	+0.4
2,387,193	+		DZA65_RS22890	0.16	+1.1
2,387,193	+		DZA65_RS22890	0.16	-0.3
2,387,193	+		DZA65_RS22890	0.16	-0.5
2,387,193	+		DZA65_RS22890	0.16	+0.5
2,387,194	-		DZA65_RS22890	0.17	+0.5
2,387,194	-		DZA65_RS22890	0.17	+0.5
2,387,237	+		DZA65_RS22890	0.34	+0.4
2,387,272	-		DZA65_RS22890	0.48	-0.2
2,387,274	-		DZA65_RS22890	0.49	-0.5
2,387,315	+		DZA65_RS22890	0.65	-0.1
2,387,315	+		DZA65_RS22890	0.65	-0.2
2,387,316	-		DZA65_RS22890	0.66	-0.8
2,387,317	+		DZA65_RS22890	0.66	+0.9
2,387,317	+		DZA65_RS22890	0.66	-0.0
2,387,318	-		DZA65_RS22890	0.67	+1.3
2,387,318	-		DZA65_RS22890	0.67	+0.1
2,387,318	-		DZA65_RS22890	0.67	+0.4
2,387,328	+		DZA65_RS22890	0.71	+0.4
2,387,328	+		DZA65_RS22890	0.71	+0.5
2,387,329	-		DZA65_RS22890	0.71	+0.8
2,387,329	-		DZA65_RS22890	0.71	+0.7
2,387,352	+		DZA65_RS22890	0.80	+1.2
2,387,353	-		DZA65_RS22890	0.81	+0.3
2,387,353	-		DZA65_RS22890	0.81	+1.5
2,387,353	-		DZA65_RS22890	0.81	-0.8
2,387,355	-		DZA65_RS22890	0.82	-1.4
2,387,364	-		DZA65_RS22890	0.85	-0.0
2,387,419	+				-0.7
2,387,466	+				+0.2
2,387,466	+				-0.8
2,387,466	+				-0.3
2,387,467	-				+2.5
2,387,475	+				+0.9
2,387,475	+				-0.1
2,387,476	-				-0.2
2,387,477	+				+1.2
2,387,477	+				-1.5
2,387,477	+				+0.3
2,387,477	+				+0.3
2,387,477	+				+0.5
2,387,477	+				-1.2
2,387,478	-				-0.2
2,387,478	-				+1.5
2,387,478	-				-0.0
2,387,478	-				-0.5
2,387,478	-				+0.1
2,387,478	-				+0.1
2,387,478	-				+0.7
2,387,478	-				-0.8
2,387,478	-				-0.2
2,387,478	-				+0.5
2,387,478	-				+0.2
2,387,478	-				-1.1
2,387,480	-				-0.8
2,387,488	+				-2.3
2,387,488	+				+0.1
2,387,489	-				-0.7
2,387,532	-				+1.2
2,387,563	-				-1.0