Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10930

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,311,279	+		DZA65_RS10920	0.36	-0.5
2,311,280	-		DZA65_RS10920	0.36	+0.5
2,311,292	+		DZA65_RS10920	0.37	+0.5
2,311,320	-		DZA65_RS10920	0.41	-0.1
2,311,377	-		DZA65_RS10920	0.49	+0.3
2,311,377	-		DZA65_RS10920	0.49	+0.2
2,311,445	+		DZA65_RS10920	0.58	-1.5
2,311,445	+		DZA65_RS10920	0.58	-0.8
2,311,555	+		DZA65_RS10920	0.72	+1.5
2,311,595	+		DZA65_RS10920	0.78	+1.0
2,311,595	+		DZA65_RS10920	0.78	+1.5
2,311,595	+		DZA65_RS10920	0.78	+0.7
2,311,595	+		DZA65_RS10920	0.78	-0.7
2,311,595	+		DZA65_RS10920	0.78	-1.6
2,311,596	-		DZA65_RS10920	0.78	+0.1
2,311,596	-		DZA65_RS10920	0.78	+0.8
2,311,596	-		DZA65_RS10920	0.78	-0.7
2,311,596	-		DZA65_RS10920	0.78	-0.4
2,311,596	-		DZA65_RS10920	0.78	+0.1
2,311,600	+		DZA65_RS10920	0.78	+0.5
2,311,600	+		DZA65_RS10920	0.78	+0.2
2,311,600	+		DZA65_RS10920	0.78	+0.1
2,311,600	+		DZA65_RS10920	0.78	-0.5
2,311,613	+		DZA65_RS10920	0.80	-1.1
2,311,613	+		DZA65_RS10920	0.80	-0.7
2,311,613	+		DZA65_RS10920	0.80	-0.3
2,311,614	-		DZA65_RS10920	0.80	-0.1
2,311,614	-		DZA65_RS10920	0.80	-0.1
2,311,614	-		DZA65_RS10920	0.80	-1.1
2,311,640	-		DZA65_RS10920	0.84	+0.0
2,311,690	+				+0.7
2,311,691	-				+1.5
2,311,738	-				+0.5
2,311,738	-				+0.8
2,311,739	+				+0.5
2,311,739	+				+0.2
2,311,740	-				+0.5
2,311,740	-				+0.6
2,311,756	+				-0.2
2,311,790	-				-0.3
2,311,798	+				+1.2
2,311,799	-				+0.6
2,311,799	-				-0.6
2,311,824	+				-0.8
2,311,824	+				-0.2
2,311,952	+				-1.1
2,311,953	-				+0.8
2,311,953	-				-2.1
2,311,978	-				+0.2
2,311,978	-				-0.7
2,312,021	+				-0.8
2,312,048	+				-0.4
2,312,048	+				-0.1
2,312,093	+				+0.8
2,312,093	+				-1.1
2,312,093	+				-2.3
2,312,093	+				+1.6
2,312,094	-				-0.5
2,312,227	-				-2.7
2,312,235	+				-1.1
2,312,235	+				-1.5
2,312,236	-				+2.1
2,312,236	-				+0.4
2,312,248	+				+0.9
2,312,290	+				+0.3
2,312,299	+				+1.2
2,312,300	-				-0.5
2,312,320	+				+0.1
2,312,356	+		DZA65_RS10930	0.13	+0.5
2,312,356	+		DZA65_RS10930	0.13	-0.5
2,312,356	+		DZA65_RS10930	0.13	-0.4
2,312,356	+		DZA65_RS10930	0.13	-0.0
2,312,356	+		DZA65_RS10930	0.13	+1.3
2,312,356	+		DZA65_RS10930	0.13	+0.3
2,312,356	+		DZA65_RS10930	0.13	+1.2
2,312,356	+		DZA65_RS10930	0.13	-1.1
2,312,356	+		DZA65_RS10930	0.13	+0.1
2,312,356	+				+0.1
2,312,356	+		DZA65_RS10930	0.13	-0.3
2,312,357	-		DZA65_RS10930	0.13	-1.9
2,312,357	-		DZA65_RS10930	0.13	-0.5
2,312,357	-		DZA65_RS10930	0.13	-2.1
2,312,357	-		DZA65_RS10930	0.13	+1.7
2,312,357	-		DZA65_RS10930	0.13	+0.9
2,312,357	-		DZA65_RS10930	0.13	-0.5
2,312,357	-		DZA65_RS10930	0.13	+0.5
2,312,377	+		DZA65_RS10930	0.16	+0.2
2,312,433	-				+0.1
2,312,433	-		DZA65_RS10930	0.25	-0.5
2,312,439	-		DZA65_RS10930	0.26	+0.7
2,312,459	+		DZA65_RS10930	0.29	+1.1
2,312,459	+		DZA65_RS10930	0.29	+0.2
2,312,459	+		DZA65_RS10930	0.29	+0.7
2,312,459	+		DZA65_RS10930	0.29	+1.6
2,312,459	+		DZA65_RS10930	0.29	+1.5
2,312,459	+		DZA65_RS10930	0.29	-2.0
2,312,460	-		DZA65_RS10930	0.29	-0.7
2,312,460	-		DZA65_RS10930	0.29	-1.1
2,312,460	-		DZA65_RS10930	0.29	-1.5
2,312,463	+		DZA65_RS10930	0.30	+1.1
2,312,463	+		DZA65_RS10930	0.30	-1.1
2,312,463	+		DZA65_RS10930	0.30	-0.2
2,312,463	+		DZA65_RS10930	0.30	-0.4
2,312,463	+		DZA65_RS10930	0.30	+0.7
2,312,463	+		DZA65_RS10930	0.30	+0.7
2,312,463	+		DZA65_RS10930	0.30	-2.1
2,312,464	-		DZA65_RS10930	0.30	-2.7
2,312,464	-		DZA65_RS10930	0.30	+0.5
2,312,464	-		DZA65_RS10930	0.30	+0.8
2,312,464	-		DZA65_RS10930	0.30	+0.7
2,312,464	-		DZA65_RS10930	0.30	-0.8
2,312,464	-		DZA65_RS10930	0.30	-0.4
2,312,464	-		DZA65_RS10930	0.30	+1.0
2,312,464	-		DZA65_RS10930	0.30	-3.2
2,312,464	-		DZA65_RS10930	0.30	-1.5
2,312,465	+		DZA65_RS10930	0.30	+1.3
2,312,465	+		DZA65_RS10930	0.30	-0.5
2,312,465	+		DZA65_RS10930	0.30	+0.1
2,312,466	-		DZA65_RS10930	0.30	+0.5
2,312,494	+		DZA65_RS10930	0.35	-1.1
2,312,495	-		DZA65_RS10930	0.35	+0.2
2,312,519	+		DZA65_RS10930	0.39	+1.8
2,312,531	-		DZA65_RS10930	0.41	-0.3
2,312,589	+		DZA65_RS10930	0.50	+0.5
2,312,589	+		DZA65_RS10930	0.50	+0.0
2,312,592	+		DZA65_RS10930	0.50	+0.3
2,312,593	-		DZA65_RS10930	0.50	-1.4
2,312,593	-		DZA65_RS10930	0.50	+0.5
2,312,625	+		DZA65_RS10930	0.55	-0.6
2,312,626	-		DZA65_RS10930	0.56	+0.5
2,312,626	-		DZA65_RS10930	0.56	+0.4
2,312,626	-		DZA65_RS10930	0.56	+0.1
2,312,646	+		DZA65_RS10930	0.59	-1.3
2,312,646	+		DZA65_RS10930	0.59	+0.3
2,312,646	+		DZA65_RS10930	0.59	-0.7
2,312,646	+		DZA65_RS10930	0.59	-0.7
2,312,647	-		DZA65_RS10930	0.59	-0.9
2,312,647	-		DZA65_RS10930	0.59	+0.2
2,312,647	-		DZA65_RS10930	0.59	+1.5
2,312,647	-		DZA65_RS10930	0.59	-1.3
2,312,647	-		DZA65_RS10930	0.59	+0.7
2,312,647	-		DZA65_RS10930	0.59	-1.1
2,312,647	-		DZA65_RS10930	0.59	-0.4
2,312,698	+		DZA65_RS10930	0.67	+0.6
2,312,708	+		DZA65_RS10930	0.69	+0.5
2,312,708	+		DZA65_RS10930	0.69	-0.1
2,312,709	-		DZA65_RS10930	0.69	-1.5
2,312,754	+		DZA65_RS10930	0.76	+1.5
2,312,755	-		DZA65_RS10930	0.76	-1.0
2,312,755	-		DZA65_RS10930	0.76	-0.3
2,312,766	-		DZA65_RS10930	0.78	+1.2
2,312,779	+				-0.1
2,312,779	+		DZA65_RS10930	0.80	-0.5
2,312,779	+		DZA65_RS10930	0.80	-0.5
2,312,780	-		DZA65_RS10930	0.80	-2.1
2,312,783	+		DZA65_RS10930	0.80	+0.5
2,312,783	+		DZA65_RS10930	0.80	+1.1
2,312,783	+		DZA65_RS10930	0.80	-0.7
2,312,783	+		DZA65_RS10930	0.80	-1.5
2,312,783	+		DZA65_RS10930	0.80	-0.0
2,312,784	-		DZA65_RS10930	0.81	-0.5
2,312,784	-				+1.1
2,312,784	-		DZA65_RS10930	0.81	+0.8
2,312,784	-		DZA65_RS10930	0.81	-0.2
2,312,784	-		DZA65_RS10930	0.81	-0.4
2,312,875	+				-0.5
2,312,875	+				-1.8
2,312,876	-				-0.3
2,312,876	-				+2.5
2,312,907	+				+0.3
2,312,916	+				-0.1
2,312,962	+				+0.7
2,312,962	+				-2.3
2,312,962	+				+1.1
2,312,962	+				-0.3
2,312,962	+				+0.2
2,312,962	+				-0.5
2,312,963	-				-0.5
2,312,964	+				-0.5
2,312,964	+				-0.6
2,312,964	+				+0.3
2,312,964	+				-0.1
2,312,965	-				-1.1
2,312,965	-				+0.7
2,313,006	+				+0.7
2,313,007	-				+0.5
2,313,007	-				-0.8
2,313,013	+				+1.1
2,313,014	-				-3.2
2,313,014	-				+0.4
2,313,025	+				-0.4
2,313,025	+				-1.8
2,313,026	-				+0.9
2,313,043	+				+0.3
2,313,101	+		DZA65_RS10935	0.12	-0.5
2,313,101	+		DZA65_RS10935	0.12	-2.0
2,313,103	+		DZA65_RS10935	0.12	+0.1
2,313,103	+		DZA65_RS10935	0.12	-1.1
2,313,103	+		DZA65_RS10935	0.12	+0.3
2,313,104	-		DZA65_RS10935	0.12	-0.7
2,313,104	-		DZA65_RS10935	0.12	+0.4
2,313,175	+		DZA65_RS10935	0.22	+0.4
2,313,176	-		DZA65_RS10935	0.22	-0.3
2,313,179	+		DZA65_RS10935	0.22	+0.9
2,313,179	+		DZA65_RS10935	0.22	+2.1
2,313,180	-		DZA65_RS10935	0.23	+1.2
2,313,180	-		DZA65_RS10935	0.23	+1.3
2,313,181	+		DZA65_RS10935	0.23	-0.0
2,313,204	-		DZA65_RS10935	0.26	-0.1
2,313,227	-		DZA65_RS10935	0.29	-2.3
2,313,273	-		DZA65_RS10935	0.35	-0.3
2,313,273	-		DZA65_RS10935	0.35	-0.3
2,313,278	+		DZA65_RS10935	0.36	-0.3
2,313,278	+		DZA65_RS10935	0.36	-2.2
2,313,279	-		DZA65_RS10935	0.36	+0.2
2,313,290	+		DZA65_RS10935	0.38	-0.3
2,313,332	+		DZA65_RS10935	0.43	-0.0
2,313,332	+		DZA65_RS10935	0.43	-1.0
2,313,333	-		DZA65_RS10935	0.43	-2.3
2,313,333	-		DZA65_RS10935	0.43	-0.8
2,313,334	+		DZA65_RS10935	0.44	-0.1
2,313,367	+		DZA65_RS10935	0.48	+0.2
2,313,367	+		DZA65_RS10935	0.48	-0.5
2,313,370	+		DZA65_RS10935	0.48	+0.5
2,313,371	-		DZA65_RS10935	0.49	-0.3
2,313,371	-		DZA65_RS10935	0.49	+0.1
2,313,371	-		DZA65_RS10935	0.49	+0.8
2,313,371	-		DZA65_RS10935	0.49	-0.7
2,313,375	-		DZA65_RS10935	0.49	-0.0
2,313,391	-		DZA65_RS10935	0.51	+0.9
2,313,406	+		DZA65_RS10935	0.53	-0.7
2,313,407	-		DZA65_RS10935	0.54	-0.0
2,313,419	+		DZA65_RS10935	0.55	+0.9
2,313,420	-		DZA65_RS10935	0.55	+0.5
2,313,483	-		DZA65_RS10935	0.64	-2.1
2,313,548	+		DZA65_RS10935	0.73	-1.7
2,313,548	+		DZA65_RS10935	0.73	-2.8
2,313,702	-				-0.3
2,313,702	-				+0.1
2,313,702	-				+1.5
2,313,702	-				+2.1
2,313,705	+				+0.1
2,313,705	+				-0.6
2,313,705	+				+0.7
2,313,706	-				-0.4
2,313,706	-				-0.1
2,313,706	-				+1.0
2,313,750	+				-0.3
2,313,769	-				-1.1
2,313,772	+				-3.0
2,313,902	+				+0.9
2,313,902	+				+0.2
2,313,902	+				-0.6
2,313,906	+				-0.6