Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10895

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,305,684	+		DZA65_RS10890	0.69	+0.1
2,305,684	+		DZA65_RS10890	0.69	-0.4
2,305,686	+		DZA65_RS10890	0.69	-2.1
2,305,686	+		DZA65_RS10890	0.69	+2.1
2,305,686	+		DZA65_RS10890	0.69	-1.8
2,305,687	-		DZA65_RS10890	0.69	-0.8
2,305,687	-		DZA65_RS10890	0.69	+1.7
2,305,687	-		DZA65_RS10890	0.69	+0.1
2,305,687	-		DZA65_RS10890	0.69	-0.2
2,305,687	-		DZA65_RS10890	0.69	-2.2
2,305,687	-		DZA65_RS10890	0.69	-1.1
2,305,687	-		DZA65_RS10890	0.69	+0.5
2,305,687	-		DZA65_RS10890	0.69	-0.2
2,305,705	+		DZA65_RS10890	0.71	-1.0
2,305,706	-		DZA65_RS10890	0.71	-0.5
2,305,738	+		DZA65_RS10890	0.73	+0.4
2,305,739	-		DZA65_RS10890	0.73	-1.0
2,305,739	-		DZA65_RS10890	0.73	+1.1
2,305,739	-		DZA65_RS10890	0.73	+0.3
2,305,873	-		DZA65_RS10890	0.82	-0.1
2,305,964	+		DZA65_RS10890	0.88	+0.2
2,305,971	+		DZA65_RS10890	0.89	+0.2
2,305,972	-		DZA65_RS10890	0.89	+0.5
2,305,999	+				-1.5
2,306,000	-				-0.1
2,306,000	-				-1.1
2,306,002	-				+0.5
2,306,002	-				-1.5
2,306,065	+				-0.4
2,306,065	+				-0.8
2,306,068	+				-1.5
2,306,088	+				-0.9
2,306,088	+				-0.4
2,306,102	+				-0.4
2,306,114	+				+0.5
2,306,115	-				-0.5
2,306,119	+				-2.0
2,306,120	-				+1.1
2,306,121	+				-1.5
2,306,121	+				-1.1
2,306,121	+				+0.1
2,306,121	+				-0.1
2,306,121	+				-0.8
2,306,122	-				+1.0
2,306,122	-				+0.2
2,306,135	-				+0.5
2,306,137	+				-0.5
2,306,138	-				-0.3
2,306,184	-				-2.2
2,306,184	-				+0.3
2,306,223	+				+0.2
2,306,224	-				-1.1
2,306,226	+				+0.5
2,306,226	+				+0.7
2,306,226	+				+0.2
2,306,226	+				+0.5
2,306,226	+				+0.8
2,306,227	-				+0.3
2,306,227	-				+0.5
2,306,227	-				+0.5
2,306,227	-				-0.7
2,306,227	-				-0.2
2,306,227	-				+1.1
2,306,227	-				-0.7
2,306,228	+				+0.2
2,306,228	+				+0.6
2,306,228	+				+1.3
2,306,228	+				-0.4
2,306,229	-				+1.1
2,306,229	-				-0.8
2,306,229	-				-1.4
2,306,229	-				-1.4
2,306,229	-				-0.5
2,306,236	-				-0.1
2,306,299	+				-0.2
2,306,299	+				+0.5
2,306,299	+				+0.5
2,306,299	+				-0.4
2,306,299	+				-1.4
2,306,299	+				+1.2
2,306,299	+				-0.1
2,306,300	-				+1.3
2,306,300	-				+0.1
2,306,300	-				-1.8
2,306,300	-				-0.3
2,306,300	-				+0.8
2,306,300	-				+0.1
2,306,300	-				+0.5
2,306,301	+				+2.3
2,306,301	+				-0.1
2,306,301	+				-0.1
2,306,302	-				-1.1
2,306,302	-				-0.8
2,306,323	+				+0.6
2,306,323	+				+0.2
2,306,323	+				-0.7
2,306,323	+				+1.0
2,306,323	+				+0.5
2,306,324	-				+0.5
2,306,324	-				+0.3
2,306,326	+				-0.8
2,306,326	+				+0.5
2,306,413	+		DZA65_RS22880	0.20	-1.8
2,306,479	+		DZA65_RS22880	0.57	+0.5
2,306,527	-		DZA65_RS22880	0.84	-1.5
2,306,531	+		DZA65_RS22880	0.86	-0.1
2,306,531	+		DZA65_RS22880	0.86	-1.1
2,306,531	+		DZA65_RS22880	0.86	-0.4
2,306,531	+		DZA65_RS22880	0.86	+0.5
2,306,531	+		DZA65_RS22880	0.86	+1.5
2,306,531	+		DZA65_RS22880	0.86	-0.7
2,306,532	-		DZA65_RS22880	0.87	+0.1
2,306,532	-		DZA65_RS22880	0.87	+0.3
2,306,543	+				-0.5
2,306,543	+				-0.6
2,306,552	+				+0.5
2,306,563	+				+1.1
2,306,564	-				+0.1
2,306,624	+				-0.1
2,306,624	+				+0.1
2,306,624	+				-1.7
2,306,624	+				-0.7
2,306,657	+				+1.8
2,306,658	-				-0.8
2,306,658	-				-0.5
2,306,658	-				+0.6
2,306,769	+				+0.0
2,306,770	-				-2.0
2,306,868	+		DZA65_RS10895	0.14	+2.1
2,306,869	-		DZA65_RS10895	0.14	-0.7
2,306,893	-		DZA65_RS10895	0.16	-3.2
2,307,045	+		DZA65_RS10895	0.25	-1.1
2,307,147	+		DZA65_RS10895	0.31	+1.0
2,307,148	-				+1.1
2,307,148	-				+0.9
2,307,148	-		DZA65_RS10895	0.31	+0.2
2,307,216	+		DZA65_RS10895	0.35	-0.5
2,307,271	-		DZA65_RS10895	0.38	+1.1
2,307,312	-		DZA65_RS10895	0.41	-1.5
2,307,476	-		DZA65_RS10895	0.50	+0.8
2,307,484	+		DZA65_RS10895	0.51	-0.8
2,307,516	+		DZA65_RS10895	0.52	-0.4
2,307,516	+		DZA65_RS10895	0.52	+1.2
2,307,520	+		DZA65_RS10895	0.53	+2.6
2,307,616	-		DZA65_RS10895	0.58	+0.0
2,307,616	-		DZA65_RS10895	0.58	-0.4
2,307,640	+		DZA65_RS10895	0.60	-1.3
2,307,640	+		DZA65_RS10895	0.60	+0.6
2,307,640	+		DZA65_RS10895	0.60	-0.3
2,307,641	-		DZA65_RS10895	0.60	+0.8
2,307,641	-		DZA65_RS10895	0.60	+0.2
2,307,721	-		DZA65_RS10895	0.65	+1.1
2,307,806	+		DZA65_RS10895	0.70	+0.8
2,307,887	+		DZA65_RS10895	0.74	-0.3
2,307,903	+		DZA65_RS10895	0.75	-0.7
2,307,903	+		DZA65_RS10895	0.75	-0.7
2,307,904	-		DZA65_RS10895	0.75	-0.2
2,307,904	-		DZA65_RS10895	0.75	+0.7
2,307,971	+		DZA65_RS10895	0.79	-0.2
2,307,971	+		DZA65_RS10895	0.79	+0.0
2,307,971	+		DZA65_RS10895	0.79	+0.8
2,307,972	-		DZA65_RS10895	0.79	-0.5
2,307,972	-		DZA65_RS10895	0.79	+1.3
2,307,972	-		DZA65_RS10895	0.79	-0.1
2,307,972	-		DZA65_RS10895	0.79	+0.8
2,307,972	-		DZA65_RS10895	0.79	+0.2
2,307,972	-		DZA65_RS10895	0.79	+0.2
2,307,972	-		DZA65_RS10895	0.79	-0.7
2,308,017	+		DZA65_RS10895	0.82	-0.7
2,308,017	+		DZA65_RS10895	0.82	-0.2
2,308,017	+		DZA65_RS10895	0.82	+0.3
2,308,061	+		DZA65_RS10895	0.85	-0.2
2,308,061	+		DZA65_RS10895	0.85	+1.7
2,308,061	+		DZA65_RS10895	0.85	-0.4
2,308,062	-		DZA65_RS10895	0.85	-0.2
2,308,062	-		DZA65_RS10895	0.85	+2.8
2,308,083	+		DZA65_RS10895	0.86	-0.5
2,308,084	-		DZA65_RS10895	0.86	-1.3
2,308,202	-				+0.5
2,308,241	-				+2.3
2,308,338	+				-0.3
2,308,339	-				-0.7
2,308,339	-				+0.5
2,308,340	+				-0.4
2,308,340	+				-1.3
2,308,340	+				+0.2
2,308,340	+				+0.0
2,308,340	+				-0.5
2,308,340	+				-0.3
2,308,341	-				-0.1
2,308,341	-				-2.3
2,308,341	-				+0.1
2,308,345	-				+0.1
2,308,360	+				+0.0
2,308,360	+				+1.0
2,308,360	+				+0.5
2,308,361	-				-0.4
2,308,361	-				-0.3
2,308,361	-				+0.1
2,308,361	-				-0.0
2,308,361	-				+0.3
2,308,369	+				-0.8
2,308,382	+				+1.0
2,308,406	+				-1.1
2,308,407	-				+0.3
2,308,414	-				-0.7
2,308,414	-				+0.9
2,308,423	+				+1.0
2,308,440	+				+0.1
2,308,440	+				-0.7
2,308,441	-				-0.5
2,308,444	+				-0.1
2,308,444	+				+0.2
2,308,494	-		DZA65_RS10900	0.14	-3.5
2,308,494	-		DZA65_RS10900	0.14	-0.3
2,308,511	+		DZA65_RS10900	0.20	+0.1
2,308,511	+		DZA65_RS10900	0.20	+0.1
2,308,511	+		DZA65_RS10900	0.20	+1.5
2,308,511	+		DZA65_RS10900	0.20	+0.3
2,308,512	-		DZA65_RS10900	0.20	-0.8
2,308,512	-		DZA65_RS10900	0.20	+0.1
2,308,512	-		DZA65_RS10900	0.20	+0.5
2,308,512	-		DZA65_RS10900	0.20	+2.1
2,308,512	-		DZA65_RS10900	0.20	-2.3
2,308,512	-		DZA65_RS10900	0.20	-1.0
2,308,572	+		DZA65_RS10900	0.40	-0.2
2,308,733	+				+0.2
2,308,734	-				+0.5
2,308,734	-				+0.5
2,308,734	-				+0.0
2,308,734	-				-1.1
2,308,742	+				-0.3
2,308,742	+				+0.3
2,308,742	+				+0.1
2,308,742	+				+0.2
2,308,742	+				-0.2
2,308,742	+				+0.1
2,308,742	+				-1.3
2,308,742	+				-0.7
2,308,743	-				-0.3
2,308,743	-				+0.7
2,308,743	-				+0.7
2,308,743	-				-0.5
2,308,752	+				+0.8
2,308,753	-				+0.3
2,308,796	+				-1.1
2,308,797	-				+1.0
2,308,827	+				+1.8
2,308,844	+				+0.3
2,308,844	+				+0.0
2,308,844	+				+0.2
2,308,844	+				-0.2
2,308,844	+				+1.5
2,308,845	-				+0.5
2,308,845	-				-0.2
2,308,845	-				+0.5
2,308,849	+				+0.3
2,308,849	+				-1.2
2,308,850	-				-0.8
2,308,850	-				-0.3
2,308,853	-				-0.5
2,308,853	-				-1.1
2,308,951	+				-2.4
2,308,951	+				-0.1
2,308,951	+				-1.1
2,308,951	+				-0.2
2,308,951	+				+0.5
2,308,951	+				-1.8
2,308,952	-				+0.1
2,308,952	-				-1.8
2,308,952	-				+0.1
2,308,952	-				-2.2
2,308,952	-				-1.1
2,308,952	-				-2.0
2,308,953	+				+0.8
2,308,953	+				+0.5
2,308,953	+				-0.7
2,308,953	+				-0.1
2,308,953	+				+0.1
2,308,953	+				-1.0
2,308,953	+				-1.5
2,308,953	+				+0.3
2,308,953	+				-1.0
2,308,953	+				-2.3
2,308,954	-				-1.5
2,308,954	-				-0.9
2,308,954	-				+0.1
2,308,954	-				-1.1
2,308,954	-				+0.0
2,308,954	-				-1.8
2,308,954	-				-0.8
2,308,954	-				-2.2
2,308,954	-				-1.8
2,308,957	+				+0.3
2,308,958	-				-2.2
2,308,958	-				-2.5
2,308,958	-				+0.2
2,309,002	+				-1.5
2,309,002	+				-1.8
2,309,003	-				-1.5
2,309,003	-				-0.8
2,309,062	+		DZA65_RS10905	0.14	-1.3
2,309,063	-		DZA65_RS10905	0.14	-3.0
2,309,063	-		DZA65_RS10905	0.14	-2.5
2,309,063	-		DZA65_RS10905	0.14	-1.5
2,309,065	+		DZA65_RS10905	0.14	-0.8
2,309,065	+		DZA65_RS10905	0.14	-1.8
2,309,066	-		DZA65_RS10905	0.14	-2.3
2,309,066	-		DZA65_RS10905	0.14	-0.5
2,309,066	-		DZA65_RS10905	0.14	-1.5
2,309,066	-		DZA65_RS10905	0.14	-2.8
2,309,066	-		DZA65_RS10905	0.14	+1.1
2,309,066	-		DZA65_RS10905	0.14	-2.1
2,309,282	-		DZA65_RS10905	0.43	-2.1
2,309,282	-		DZA65_RS10905	0.43	-2.5
2,309,299	+		DZA65_RS10905	0.45	-2.3
2,309,300	-		DZA65_RS10905	0.45	-1.5