Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09970

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,106,651	+		DZA65_RS09965	0.62	+0.7
2,106,690	+		DZA65_RS09965	0.66	+0.4
2,106,694	-		DZA65_RS09965	0.66	-1.4
2,106,798	-		DZA65_RS09965	0.78	+1.7
2,106,862	+		DZA65_RS09965	0.85	+0.3
2,106,887	+		DZA65_RS09965	0.87	-1.6
2,106,888	-		DZA65_RS09965	0.87	-0.1
2,106,895	+		DZA65_RS09965	0.88	-1.1
2,106,895	+		DZA65_RS09965	0.88	-1.5
2,106,895	+		DZA65_RS09965	0.88	-1.9
2,106,896	-		DZA65_RS09965	0.88	-0.4
2,106,898	+		DZA65_RS09965	0.88	-0.5
2,106,967	+				+0.5
2,106,994	-				-0.3
2,107,006	-				-1.1
2,107,026	-				-1.3
2,107,026	-				+0.1
2,107,026	-				+0.5
2,107,034	-				+0.1
2,107,041	+				+0.3
2,107,042	-				-0.3
2,107,064	-				-1.3
2,107,072	+				-0.5
2,107,072	+				-0.8
2,107,084	-				-0.7
2,107,084	-				-1.5
2,107,084	-				-0.5
2,107,108	+				-0.4
2,107,120	-				-0.5
2,107,120	-				-1.7
2,107,129	+				-0.0
2,107,129	+				-0.5
2,107,129	+				+0.7
2,107,129	+				-0.4
2,107,130	-				+0.3
2,107,130	-				-0.2
2,107,139	+				+1.1
2,107,139	+				+0.5
2,107,188	+				-2.7
2,107,194	+				-1.3
2,107,194	+				-1.8
2,107,195	-				+0.5
2,107,203	+				-1.2
2,107,204	-				-1.1
2,107,205	+				+0.1
2,107,205	+				+0.5
2,107,205	+				-0.4
2,107,205	+				+1.3
2,107,205	+				-0.2
2,107,205	+				+0.4
2,107,205	+				+0.5
2,107,205	+				-2.1
2,107,205	+				+1.0
2,107,205	+				+0.0
2,107,205	+				-0.1
2,107,205	+				-0.1
2,107,205	+				+0.5
2,107,205	+				+1.4
2,107,205	+				+1.1
2,107,206	-				-0.5
2,107,206	-				-1.1
2,107,206	-				-0.3
2,107,206	-				+0.0
2,107,206	-				+0.1
2,107,206	-				-1.1
2,107,206	-				-0.1
2,107,206	-				-0.2
2,107,206	-				-2.9
2,107,206	-				-0.2
2,107,218	+				-0.7
2,107,219	-				-0.4
2,107,275	+				-0.5
2,107,275	+				+0.4
2,107,292	-				-0.2
2,107,302	+				+1.1
2,107,302	+				-0.3
2,107,302	+				+0.1
2,107,307	+				+0.4
2,107,308	-				+0.5
2,107,318	+				+0.4
2,107,318	+				-1.5
2,107,318	+				+0.7
2,107,318	+				-0.0
2,107,319	-				+1.7
2,107,323	+				-0.2
2,107,324	-				+0.2
2,107,324	-				-0.6
2,107,360	+				+0.5
2,107,360	+				-0.5
2,107,360	+				+0.8
2,107,360	+				+1.5
2,107,360	+				+0.4
2,107,360	+				+0.8
2,107,361	-				-1.5
2,107,361	-				+0.1
2,107,361	-				-1.4
2,107,361	-				-0.7
2,107,361	-				-0.9
2,107,361	-				-0.1
2,107,361	-				+0.5
2,107,361	-				+1.4
2,107,361	-				+0.2
2,107,361	-				-0.2
2,107,361	-				-0.5
2,107,386	+				-0.6
2,107,386	+				-1.5
2,107,387	-				-0.2
2,107,387	-				+0.8
2,107,387	-				+1.7
2,107,387	-				+0.9
2,107,387	-				+0.2
2,107,387	-				+0.1
2,107,387	-				+0.5
2,107,413	+				+1.1
2,107,414	-				+0.3
2,107,419	+				-1.1
2,107,419	+				-0.8
2,107,420	-				-1.2
2,107,420	-				+0.3
2,107,480	+				+3.1
2,107,480	+				-1.5
2,107,480	+				+1.1
2,107,480	+				+0.5
2,107,480	+				+0.3
2,107,480	+				-0.3
2,107,480	+				+3.1
2,107,481	-				+1.0
2,107,481	-				+1.5
2,107,481	-				-0.7
2,107,607	+				+0.2
2,107,607	+				+0.5
2,107,607	+				-0.2
2,107,607	+				-0.5
2,107,607	+				+1.5
2,107,607	+				+0.1
2,107,608	-				+0.0
2,107,608	-				-0.5
2,107,608	-				-0.1
2,107,608	-				+0.4
2,107,608	-				-1.5
2,107,608	-				+1.0
2,107,608	-				+1.2
2,107,608	-				-1.1
2,107,638	+				-0.7
2,107,639	-				-0.5
2,107,639	-				+0.5
2,107,694	+		DZA65_RS09970	0.12	-0.7
2,107,694	+		DZA65_RS09970	0.12	-1.1
2,107,694	+		DZA65_RS09970	0.12	+1.2
2,107,694	+		DZA65_RS09970	0.12	+1.1
2,107,695	-		DZA65_RS09970	0.12	-0.6
2,107,695	-		DZA65_RS09970	0.12	+0.3
2,107,695	-		DZA65_RS09970	0.12	+0.5
2,107,841	+		DZA65_RS09970	0.32	+0.2
2,107,842	-		DZA65_RS09970	0.32	-2.1
2,107,842	-		DZA65_RS09970	0.32	-1.3
2,107,842	-		DZA65_RS09970	0.32	-0.6
2,107,842	-		DZA65_RS09970	0.32	+1.2
2,107,896	+		DZA65_RS09970	0.40	-0.1
2,107,897	-		DZA65_RS09970	0.40	+0.2
2,107,962	+		DZA65_RS09970	0.48	-1.1
2,107,963	-		DZA65_RS09970	0.49	-0.7
2,108,040	+		DZA65_RS09970	0.59	+0.0
2,108,040	+		DZA65_RS09970	0.59	-0.7
2,108,040	+		DZA65_RS09970	0.59	-0.2
2,108,040	+		DZA65_RS09970	0.59	-2.1
2,108,040	+		DZA65_RS09970	0.59	+0.5
2,108,040	+		DZA65_RS09970	0.59	-0.9
2,108,041	-		DZA65_RS09970	0.59	-2.1
2,108,041	-		DZA65_RS09970	0.59	-1.1
2,108,041	-		DZA65_RS09970	0.59	-1.1
2,108,041	-		DZA65_RS09970	0.59	-0.2
2,108,041	-		DZA65_RS09970	0.59	-2.8
2,108,041	-		DZA65_RS09970	0.59	-0.6
2,108,043	+		DZA65_RS09970	0.59	-1.4
2,108,043	+		DZA65_RS09970	0.59	-2.1
2,108,044	-		DZA65_RS09970	0.60	-0.5
2,108,044	-		DZA65_RS09970	0.60	+0.1
2,108,100	+		DZA65_RS09970	0.67	-1.1
2,108,101	-		DZA65_RS09970	0.67	-0.6
2,108,145	+		DZA65_RS09970	0.73	-0.3
2,108,146	-		DZA65_RS09970	0.73	-1.3
2,108,156	+		DZA65_RS09970	0.75	-1.3
2,108,156	+		DZA65_RS09970	0.75	-0.7
2,108,156	+		DZA65_RS09970	0.75	+0.8
2,108,238	-		DZA65_RS09970	0.86	-1.1
2,108,274	+				+0.5
2,108,296	+				-2.3
2,108,296	+				-0.3
2,108,334	+				-0.7
2,108,424	+				-1.5
2,108,424	+				-0.9
2,108,424	+				-1.8
2,108,424	+				+2.5
2,108,424	+				+0.5
2,108,425	-				-0.1
2,108,425	-				-0.9
2,108,591	+				-0.7
2,108,591	+				+0.5
2,108,593	+				-0.3
2,108,621	+				-1.3
2,108,622	-				-1.3
2,108,622	-				+0.6
2,108,622	-				+0.5
2,108,648	+				+1.5
2,108,648	+				+0.1
2,108,648	+				+0.2
2,108,649	-				+0.5
2,108,649	-				-0.7
2,108,649	-				-0.8
2,108,649	-				+0.1
2,108,652	+				-0.4
2,108,653	-				+0.9
2,108,671	+				-0.2
2,108,671	+				+3.5
2,108,671	+				-1.1
2,108,678	-				+1.5
2,108,856	+				-0.5
2,108,857	-				+0.1
2,108,857	-				+0.3
2,108,887	+		DZA65_RS09975	0.10	+0.1
2,108,888	-		DZA65_RS09975	0.10	-0.3
2,108,888	-		DZA65_RS09975	0.10	-0.2
2,108,888	-		DZA65_RS09975	0.10	+1.7
2,108,888	-		DZA65_RS09975	0.10	-0.1
2,108,891	+		DZA65_RS09975	0.11	+0.2
2,108,891	+		DZA65_RS09975	0.11	-0.8
2,108,892	-		DZA65_RS09975	0.11	-0.3
2,108,935	+		DZA65_RS09975	0.12	-2.1
2,108,935	+		DZA65_RS09975	0.12	+0.0
2,108,935	+		DZA65_RS09975	0.12	-1.2
2,108,935	+		DZA65_RS09975	0.12	-2.1
2,108,936	-		DZA65_RS09975	0.12	+0.2
2,108,936	-		DZA65_RS09975	0.12	-0.4
2,108,936	-		DZA65_RS09975	0.12	+0.9
2,108,936	-		DZA65_RS09975	0.12	-0.1
2,108,936	-		DZA65_RS09975	0.12	-0.5
2,108,936	-		DZA65_RS09975	0.12	+1.5
2,108,936	-		DZA65_RS09975	0.12	+0.5
2,108,937	+		DZA65_RS09975	0.13	-2.3
2,108,938	-		DZA65_RS09975	0.13	+0.1
2,108,938	-		DZA65_RS09975	0.13	-0.3
2,108,938	-		DZA65_RS09975	0.13	-1.1
2,108,944	+		DZA65_RS09975	0.13	-0.4
2,108,945	-		DZA65_RS09975	0.13	+1.1
2,108,945	-		DZA65_RS09975	0.13	-1.0
2,108,945	-		DZA65_RS09975	0.13	+0.1
2,108,974	+		DZA65_RS09975	0.14	-1.5
2,108,975	-		DZA65_RS09975	0.14	-1.4
2,108,975	-		DZA65_RS09975	0.14	-0.2
2,108,979	-		DZA65_RS09975	0.14	+1.9
2,109,096	+		DZA65_RS09975	0.19	-1.5
2,109,096	+		DZA65_RS09975	0.19	+0.2
2,109,096	+		DZA65_RS09975	0.19	-0.3
2,109,097	-		DZA65_RS09975	0.20	-0.1
2,109,097	-		DZA65_RS09975	0.20	+0.5
2,109,097	-		DZA65_RS09975	0.20	-1.5
2,109,097	-		DZA65_RS09975	0.20	+0.2
2,109,097	-		DZA65_RS09975	0.20	-0.5
2,109,150	+		DZA65_RS09975	0.22	-1.2
2,109,150	+		DZA65_RS09975	0.22	-0.7
2,109,151	-		DZA65_RS09975	0.22	-0.8
2,109,154	+		DZA65_RS09975	0.22	-2.5
2,109,155	-		DZA65_RS09975	0.22	-0.0
2,109,155	-		DZA65_RS09975	0.22	-1.7
2,109,155	-		DZA65_RS09975	0.22	-0.6
2,109,188	+		DZA65_RS09975	0.24	-1.3
2,109,188	+		DZA65_RS09975	0.24	-0.5
2,109,188	+		DZA65_RS09975	0.24	-0.5
2,109,188	+		DZA65_RS09975	0.24	+1.5
2,109,188	+		DZA65_RS09975	0.24	+1.5
2,109,189	-		DZA65_RS09975	0.24	-2.1
2,109,189	-		DZA65_RS09975	0.24	+1.5
2,109,189	-		DZA65_RS09975	0.24	-0.5
2,109,309	+		DZA65_RS09975	0.29	+0.8
2,109,309	+		DZA65_RS09975	0.29	-0.5
2,109,310	-		DZA65_RS09975	0.29	-0.3
2,109,310	-		DZA65_RS09975	0.29	-0.1
2,109,310	-		DZA65_RS09975	0.29	+0.8