Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09585

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,014,456	+				+0.7
2,014,456	+				+1.5
2,014,475	+				-0.6
2,014,476	-				-0.0
2,014,476	-				+0.1
2,014,566	-		DZA65_RS09580	0.13	+0.2
2,014,589	+		DZA65_RS09580	0.15	-1.2
2,014,589	+		DZA65_RS09580	0.15	-0.5
2,014,590	-		DZA65_RS09580	0.15	+0.3
2,014,592	+		DZA65_RS09580	0.16	+0.2
2,014,592	+		DZA65_RS09580	0.16	-0.9
2,014,593	-		DZA65_RS09580	0.16	-3.0
2,014,593	-		DZA65_RS09580	0.16	+0.2
2,014,593	-		DZA65_RS09580	0.16	+1.3
2,014,594	+		DZA65_RS09580	0.16	+1.0
2,014,594	+		DZA65_RS09580	0.16	-0.3
2,014,594	+		DZA65_RS09580	0.16	-1.0
2,014,594	+		DZA65_RS09580	0.16	-0.9
2,014,594	+		DZA65_RS09580	0.16	-0.0
2,014,594	+		DZA65_RS09580	0.16	+0.1
2,014,594	+		DZA65_RS09580	0.16	+0.3
2,014,594	+		DZA65_RS09580	0.16	-0.8
2,014,594	+		DZA65_RS09580	0.16	+0.1
2,014,594	+		DZA65_RS09580	0.16	-0.2
2,014,594	+		DZA65_RS09580	0.16	-0.8
2,014,594	+		DZA65_RS09580	0.16	+1.2
2,014,594	+		DZA65_RS09580	0.16	+1.9
2,014,595	-		DZA65_RS09580	0.16	+0.5
2,014,595	-		DZA65_RS09580	0.16	+1.0
2,014,595	-		DZA65_RS09580	0.16	-0.5
2,014,595	-		DZA65_RS09580	0.16	+0.3
2,014,595	-		DZA65_RS09580	0.16	+0.5
2,014,595	-		DZA65_RS09580	0.16	+0.7
2,014,595	-		DZA65_RS09580	0.16	+0.5
2,014,595	-		DZA65_RS09580	0.16	-0.1
2,014,595	-		DZA65_RS09580	0.16	-0.8
2,014,595	-		DZA65_RS09580	0.16	+0.5
2,014,595	-		DZA65_RS09580	0.16	+0.5
2,014,595	-		DZA65_RS09580	0.16	+0.8
2,014,595	-		DZA65_RS09580	0.16	+0.9
2,014,595	-		DZA65_RS09580	0.16	+3.5
2,014,603	-		DZA65_RS09580	0.17	-0.9
2,014,943	+		DZA65_RS09580	0.56	-0.1
2,015,080	-		DZA65_RS09580	0.71	-1.3
2,015,080	-		DZA65_RS09580	0.71	-0.8
2,015,116	+		DZA65_RS09580	0.75	-1.6
2,015,117	-		DZA65_RS09580	0.76	+0.9
2,015,117	-		DZA65_RS09580	0.76	+0.0
2,015,117	-		DZA65_RS09580	0.76	-1.3
2,015,117	-		DZA65_RS09580	0.76	-0.5
2,015,117	-		DZA65_RS09580	0.76	+1.4
2,015,117	-		DZA65_RS09580	0.76	-1.0
2,015,155	+		DZA65_RS09580	0.80	+0.5
2,015,155	+				+0.1
2,015,235	-		DZA65_RS09580	0.89	+0.0
2,015,323	+				+1.1
2,015,323	+				+2.3
2,015,323	+				-1.0
2,015,323	+				-0.2
2,015,323	+				-1.5
2,015,323	+				-0.1
2,015,324	-				-0.5
2,015,324	-				-0.5
2,015,324	-				-1.3
2,015,324	-				-2.5
2,015,324	-				-0.7
2,015,345	+				-1.2
2,015,345	+				+0.7
2,015,345	+				+1.4
2,015,346	-				+1.0
2,015,346	-				+1.3
2,015,358	+				+1.7
2,015,358	+				+0.5
2,015,359	-				+0.2
2,015,359	-				+0.5
2,015,359	-				+2.4
2,015,359	-				-0.9
2,015,384	+				-0.0
2,015,384	+				+0.2
2,015,384	+				+0.5
2,015,385	-				-0.0
2,015,402	-				+1.3
2,015,402	-				-0.5
2,015,402	-				-1.0
2,015,402	-				-0.8
2,015,419	-				-1.8
2,015,431	-				+0.5
2,015,431	-				-1.2
2,015,576	+		DZA65_RS09585	0.15	-0.1
2,015,792	+		DZA65_RS09585	0.35	+0.1
2,015,792	+		DZA65_RS09585	0.35	-1.0
2,015,867	-		DZA65_RS09585	0.42	-0.8
2,015,867	-		DZA65_RS09585	0.42	+0.3
2,015,867	-		DZA65_RS09585	0.42	-1.3
2,015,867	-		DZA65_RS09585	0.42	+1.1
2,015,889	-		DZA65_RS09585	0.44	-1.5
2,015,892	+		DZA65_RS09585	0.44	+1.0
2,015,892	+		DZA65_RS09585	0.44	+2.0
2,015,892	+		DZA65_RS09585	0.44	-0.5
2,015,893	-		DZA65_RS09585	0.44	+0.5
2,015,893	-		DZA65_RS09585	0.44	+2.0
2,015,903	+		DZA65_RS09585	0.45	-1.5
2,015,905	+		DZA65_RS09585	0.46	-0.3
2,015,906	-		DZA65_RS09585	0.46	-0.9
2,015,906	-		DZA65_RS09585	0.46	+0.5
2,015,906	-		DZA65_RS09585	0.46	-0.9
2,015,923	+		DZA65_RS09585	0.47	+1.9
2,015,923	+		DZA65_RS09585	0.47	-1.3
2,016,135	-		DZA65_RS09585	0.67	-0.0
2,016,200	+		DZA65_RS09585	0.73	+0.5
2,016,201	-		DZA65_RS09585	0.73	+1.5
2,016,201	-		DZA65_RS09585	0.73	+0.1
2,016,215	-		DZA65_RS09585	0.74	-0.6
2,016,293	-		DZA65_RS09585	0.81	-1.0
2,016,384	+		DZA65_RS09585	0.90	+1.3
2,016,385	-		DZA65_RS09585	0.90	+0.4
2,016,385	-		DZA65_RS09585	0.90	+2.9
2,016,385	-		DZA65_RS09585	0.90	+0.3
2,016,385	-		DZA65_RS09585	0.90	+0.1
2,016,385	-		DZA65_RS09585	0.90	-0.5
2,016,387	+				+0.2
2,016,387	+				-2.0
2,016,387	+				-0.2
2,016,387	+				+1.0
2,016,387	+				-0.8
2,016,388	-				+0.5
2,016,388	-				-0.7
2,016,388	-				+1.0
2,016,466	-				-1.0
2,016,488	+				-1.0
2,016,488	+				-0.2
2,016,489	-				-0.6
2,016,489	-				+1.1
2,016,528	-				+0.8
2,016,528	-				-0.5
2,016,528	-				+0.1
2,016,528	-				-2.8
2,016,573	+				-0.6
2,016,575	+				-0.3
2,016,604	+				-0.0
2,016,604	+				-0.9
2,016,604	+				+1.3
2,016,605	-				-1.0
2,016,605	-				-1.1
2,016,605	-				-0.5
2,016,605	-				-0.0
2,016,605	-				-0.3
2,016,607	+				+2.1
2,016,607	+				+1.2
2,016,607	+				-0.0
2,016,607	+				-0.2
2,016,608	-				-0.2
2,016,608	-				-0.0
2,016,608	-				-0.5
2,016,612	+				+0.6
2,016,612	+				+0.9
2,016,613	-				-0.9
2,016,738	+		DZA65_RS09590	0.16	-0.0
2,016,738	+		DZA65_RS09590	0.16	-0.6
2,016,739	-		DZA65_RS09590	0.16	-0.1
2,016,739	-		DZA65_RS09590	0.16	+0.1
2,016,797	+		DZA65_RS09590	0.23	+1.8
2,016,878	+		DZA65_RS09590	0.32	-0.5
2,016,878	+		DZA65_RS09590	0.32	-0.5
2,016,879	-		DZA65_RS09590	0.32	+0.1
2,016,879	-		DZA65_RS09590	0.32	-0.2
2,016,879	-		DZA65_RS09590	0.32	+0.1
2,016,879	-		DZA65_RS09590	0.32	+0.2
2,016,879	-		DZA65_RS09590	0.32	+0.5
2,016,879	-		DZA65_RS09590	0.32	-0.8
2,016,889	+		DZA65_RS09590	0.33	+2.0
2,016,889	+		DZA65_RS09590	0.33	+0.1
2,016,903	-		DZA65_RS09590	0.35	+0.2
2,016,903	-		DZA65_RS09590	0.35	+1.1
2,016,965	+		DZA65_RS09590	0.42	-1.6
2,016,965	+		DZA65_RS09590	0.42	-0.1
2,016,965	+		DZA65_RS09590	0.42	-0.8
2,016,965	+		DZA65_RS09590	0.42	-0.3
2,016,965	+		DZA65_RS09590	0.42	-0.9
2,016,965	+		DZA65_RS09590	0.42	-1.3
2,016,965	+		DZA65_RS09590	0.42	+0.1
2,016,966	-				+0.5
2,016,966	-		DZA65_RS09590	0.42	-1.0
2,016,966	-		DZA65_RS09590	0.42	-1.0
2,016,966	-		DZA65_RS09590	0.42	+0.7
2,016,976	+		DZA65_RS09590	0.43	-1.1
2,016,976	+		DZA65_RS09590	0.43	+0.1
2,016,976	+		DZA65_RS09590	0.43	+0.8
2,017,387	+		DZA65_RS09590	0.90	+1.5
2,017,388	-		DZA65_RS09590	0.90	+0.7
2,017,388	-		DZA65_RS09590	0.90	-1.5
2,017,388	-		DZA65_RS09590	0.90	-0.5
2,017,394	+				-0.2
2,017,394	+				-0.5
2,017,394	+				+0.1
2,017,394	+				+0.8
2,017,395	-				-1.3
2,017,395	-				-2.0
2,017,472	-				+0.5
2,017,472	-				+0.7
2,017,472	-				+0.4
2,017,475	+				+0.3
2,017,475	+				-0.0
2,017,476	-				-0.4
2,017,476	-				-0.0
2,017,476	-				-0.0