Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09260 and DZA65_RS09265 are separated by 31 nucleotides DZA65_RS09265 and DZA65_RS09270 are separated by 406 nucleotides DZA65_RS09270 and DZA65_RS09275 are separated by 283 nucleotides DZA65_RS09275 and DZA65_RS09280 are separated by 7 nucleotides
DZA65_RS09260: DZA65_RS09260 - allantoin permease, at 1,953,493 to 1,954,797
_RS09260
DZA65_RS09265: DZA65_RS09265 - Hsp20 family protein, at 1,954,829 to 1,954,993
_RS09265
DZA65_RS09270: DZA65_RS09270 - hypothetical protein, at 1,955,400 to 1,955,792
_RS09270
DZA65_RS09275: DZA65_RS09275 - ABC transporter ATP-binding protein, at 1,956,076 to 1,956,732
_RS09275
DZA65_RS09280: DZA65_RS09280 - ABC transporter permease, at 1,956,740 to 1,957,921
_RS09280
Position (kb) 1955
1956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.400 kb on - strand, within DZA65_RS09260 at 1954.403 kb on - strand, within DZA65_RS09260 at 1954.403 kb on - strand, within DZA65_RS09260 at 1954.498 kb on + strand, within DZA65_RS09260 at 1954.498 kb on + strand, within DZA65_RS09260 at 1954.498 kb on + strand, within DZA65_RS09260 at 1954.498 kb on + strand, within DZA65_RS09260 at 1954.499 kb on - strand, within DZA65_RS09260 at 1954.530 kb on + strand, within DZA65_RS09260 at 1954.531 kb on - strand, within DZA65_RS09260 at 1954.531 kb on - strand, within DZA65_RS09260 at 1954.596 kb on + strand, within DZA65_RS09260 at 1954.597 kb on - strand, within DZA65_RS09260 at 1954.597 kb on - strand at 1954.597 kb on - strand, within DZA65_RS09260 at 1954.597 kb on - strand, within DZA65_RS09260 at 1954.644 kb on + strand, within DZA65_RS09260 at 1954.718 kb on + strand at 1954.718 kb on + strand at 1954.718 kb on + strand at 1954.719 kb on - strand at 1954.765 kb on + strand at 1954.765 kb on + strand at 1954.765 kb on + strand at 1954.766 kb on - strand at 1954.766 kb on - strand at 1954.832 kb on + strand at 1954.832 kb on + strand at 1954.833 kb on - strand at 1954.833 kb on - strand at 1954.852 kb on + strand, within DZA65_RS09265 at 1954.852 kb on + strand, within DZA65_RS09265 at 1954.852 kb on + strand, within DZA65_RS09265 at 1954.853 kb on - strand, within DZA65_RS09265 at 1954.853 kb on - strand, within DZA65_RS09265 at 1954.853 kb on - strand, within DZA65_RS09265 at 1954.853 kb on - strand, within DZA65_RS09265 at 1954.909 kb on + strand, within DZA65_RS09265 at 1955.014 kb on - strand at 1955.151 kb on - strand at 1955.257 kb on + strand at 1955.411 kb on - strand at 1955.499 kb on + strand, within DZA65_RS09270 at 1955.499 kb on + strand, within DZA65_RS09270 at 1955.536 kb on - strand, within DZA65_RS09270 at 1955.599 kb on - strand, within DZA65_RS09270 at 1955.782 kb on + strand at 1955.782 kb on + strand at 1955.783 kb on - strand at 1955.783 kb on - strand at 1955.783 kb on - strand at 1955.914 kb on + strand at 1955.974 kb on + strand at 1955.979 kb on + strand at 1955.979 kb on + strand at 1955.979 kb on + strand at 1955.980 kb on - strand at 1955.980 kb on - strand at 1955.984 kb on - strand at 1955.984 kb on - strand at 1955.989 kb on + strand at 1956.069 kb on + strand at 1956.069 kb on + strand at 1956.069 kb on + strand at 1956.069 kb on + strand at 1956.070 kb on - strand at 1956.070 kb on - strand at 1956.070 kb on - strand at 1956.140 kb on + strand at 1956.141 kb on - strand at 1956.169 kb on - strand, within DZA65_RS09275 at 1956.198 kb on + strand, within DZA65_RS09275 at 1956.212 kb on + strand, within DZA65_RS09275 at 1956.213 kb on - strand, within DZA65_RS09275 at 1956.213 kb on - strand, within DZA65_RS09275 at 1956.234 kb on - strand, within DZA65_RS09275 at 1956.247 kb on + strand, within DZA65_RS09275 at 1956.247 kb on + strand, within DZA65_RS09275 at 1956.247 kb on + strand, within DZA65_RS09275 at 1956.247 kb on + strand, within DZA65_RS09275 at 1956.248 kb on - strand, within DZA65_RS09275 at 1956.248 kb on - strand, within DZA65_RS09275 at 1956.306 kb on + strand, within DZA65_RS09275 at 1956.357 kb on + strand, within DZA65_RS09275 at 1956.357 kb on + strand, within DZA65_RS09275 at 1956.358 kb on - strand, within DZA65_RS09275 at 1956.358 kb on - strand, within DZA65_RS09275 at 1956.391 kb on + strand, within DZA65_RS09275 at 1956.410 kb on + strand, within DZA65_RS09275 at 1956.410 kb on + strand, within DZA65_RS09275 at 1956.410 kb on + strand, within DZA65_RS09275 at 1956.411 kb on - strand, within DZA65_RS09275 at 1956.411 kb on - strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.457 kb on + strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.458 kb on - strand, within DZA65_RS09275 at 1956.615 kb on - strand, within DZA65_RS09275 at 1956.615 kb on - strand, within DZA65_RS09275 at 1956.730 kb on + strand at 1956.731 kb on - strand at 1956.731 kb on - strand at 1956.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,954,400 - DZA65_RS09260 0.70 -0.3 1,954,400 - DZA65_RS09260 0.70 +0.6 1,954,400 - DZA65_RS09260 0.70 +0.3 1,954,400 - DZA65_RS09260 0.70 -0.5 1,954,400 - DZA65_RS09260 0.70 +0.5 1,954,400 - DZA65_RS09260 0.70 -2.2 1,954,400 - DZA65_RS09260 0.70 -0.3 1,954,400 - DZA65_RS09260 0.70 -1.4 1,954,403 - DZA65_RS09260 0.70 -0.3 1,954,403 - DZA65_RS09260 0.70 -2.0 1,954,498 + DZA65_RS09260 0.77 -0.3 1,954,498 + DZA65_RS09260 0.77 +1.1 1,954,498 + DZA65_RS09260 0.77 +0.1 1,954,498 + DZA65_RS09260 0.77 +0.3 1,954,499 - DZA65_RS09260 0.77 -0.2 1,954,530 + DZA65_RS09260 0.79 -0.4 1,954,531 - DZA65_RS09260 0.80 +1.6 1,954,531 - DZA65_RS09260 0.80 +0.2 1,954,596 + DZA65_RS09260 0.85 -2.2 1,954,597 - DZA65_RS09260 0.85 -0.8 1,954,597 - +1.0 1,954,597 - DZA65_RS09260 0.85 -0.2 1,954,597 - DZA65_RS09260 0.85 -0.4 1,954,644 + DZA65_RS09260 0.88 +0.9 1,954,718 + +0.6 1,954,718 + -0.7 1,954,718 + -0.8 1,954,719 - -0.9 1,954,765 + -0.3 1,954,765 + -0.4 1,954,765 + +1.6 1,954,766 - -1.4 1,954,766 - -0.2 1,954,832 + +0.0 1,954,832 + +0.8 1,954,833 - -1.8 1,954,833 - -0.3 1,954,852 + DZA65_RS09265 0.14 +0.1 1,954,852 + DZA65_RS09265 0.14 +0.3 1,954,852 + DZA65_RS09265 0.14 -0.1 1,954,853 - DZA65_RS09265 0.15 -0.5 1,954,853 - DZA65_RS09265 0.15 +1.3 1,954,853 - DZA65_RS09265 0.15 -0.2 1,954,853 - DZA65_RS09265 0.15 +0.4 1,954,909 + DZA65_RS09265 0.48 -0.3 1,955,014 - +0.6 1,955,151 - -0.6 1,955,257 + -0.7 1,955,411 - +0.1 1,955,499 + DZA65_RS09270 0.25 +2.0 1,955,499 + DZA65_RS09270 0.25 +0.1 1,955,536 - DZA65_RS09270 0.35 -0.5 1,955,599 - DZA65_RS09270 0.51 -0.4 1,955,782 + -0.2 1,955,782 + +0.3 1,955,783 - -0.2 1,955,783 - -0.2 1,955,783 - -1.4 1,955,914 + -0.1 1,955,974 + -0.1 1,955,979 + -0.1 1,955,979 + +1.6 1,955,979 + +0.6 1,955,980 - +0.1 1,955,980 - -0.7 1,955,984 - -1.3 1,955,984 - +0.3 1,955,989 + -0.7 1,956,069 + -0.2 1,956,069 + +0.6 1,956,069 + +0.1 1,956,069 + -1.0 1,956,070 - +1.3 1,956,070 - +0.6 1,956,070 - +1.0 1,956,140 + -0.7 1,956,141 - +1.1 1,956,169 - DZA65_RS09275 0.14 -1.0 1,956,198 + DZA65_RS09275 0.19 -1.8 1,956,212 + DZA65_RS09275 0.21 +0.6 1,956,213 - DZA65_RS09275 0.21 -1.2 1,956,213 - DZA65_RS09275 0.21 -1.4 1,956,234 - DZA65_RS09275 0.24 -1.2 1,956,247 + DZA65_RS09275 0.26 -1.0 1,956,247 + DZA65_RS09275 0.26 -0.4 1,956,247 + DZA65_RS09275 0.26 +0.0 1,956,247 + DZA65_RS09275 0.26 -0.2 1,956,248 - DZA65_RS09275 0.26 -0.8 1,956,248 - DZA65_RS09275 0.26 -0.4 1,956,306 + DZA65_RS09275 0.35 -2.2 1,956,357 + DZA65_RS09275 0.43 +0.6 1,956,357 + DZA65_RS09275 0.43 -1.6 1,956,358 - DZA65_RS09275 0.43 -0.2 1,956,358 - DZA65_RS09275 0.43 +0.9 1,956,391 + DZA65_RS09275 0.48 -0.1 1,956,410 + DZA65_RS09275 0.51 -1.4 1,956,410 + DZA65_RS09275 0.51 +0.4 1,956,410 + DZA65_RS09275 0.51 +0.9 1,956,411 - DZA65_RS09275 0.51 +0.4 1,956,411 - DZA65_RS09275 0.51 -1.3 1,956,457 + DZA65_RS09275 0.58 +0.7 1,956,457 + DZA65_RS09275 0.58 +0.4 1,956,457 + DZA65_RS09275 0.58 +1.6 1,956,457 + DZA65_RS09275 0.58 -0.4 1,956,457 + DZA65_RS09275 0.58 -1.1 1,956,457 + DZA65_RS09275 0.58 +1.1 1,956,457 + DZA65_RS09275 0.58 -0.2 1,956,457 + DZA65_RS09275 0.58 -1.4 1,956,457 + DZA65_RS09275 0.58 -0.4 1,956,457 + DZA65_RS09275 0.58 -0.1 1,956,457 + DZA65_RS09275 0.58 +0.5 1,956,457 + DZA65_RS09275 0.58 -0.0 1,956,457 + DZA65_RS09275 0.58 +0.4 1,956,457 + DZA65_RS09275 0.58 -0.0 1,956,457 + DZA65_RS09275 0.58 +0.3 1,956,457 + DZA65_RS09275 0.58 +0.1 1,956,458 - DZA65_RS09275 0.58 +0.2 1,956,458 - DZA65_RS09275 0.58 -0.2 1,956,458 - +1.1 1,956,458 - DZA65_RS09275 0.58 -0.2 1,956,458 - DZA65_RS09275 0.58 +0.6 1,956,458 - DZA65_RS09275 0.58 +0.6 1,956,458 - DZA65_RS09275 0.58 -2.2 1,956,458 - DZA65_RS09275 0.58 -0.6 1,956,458 - DZA65_RS09275 0.58 +1.0 1,956,458 - DZA65_RS09275 0.58 -0.1 1,956,458 - DZA65_RS09275 0.58 -0.7 1,956,458 - DZA65_RS09275 0.58 -2.1 1,956,458 - DZA65_RS09275 0.58 +0.6 1,956,458 - DZA65_RS09275 0.58 -0.6 1,956,458 - DZA65_RS09275 0.58 -1.6 1,956,458 - DZA65_RS09275 0.58 -0.4 1,956,458 - DZA65_RS09275 0.58 +1.0 1,956,458 - DZA65_RS09275 0.58 -0.9 1,956,615 - DZA65_RS09275 0.82 +0.0 1,956,615 - DZA65_RS09275 0.82 -0.5 1,956,730 + -1.0 1,956,731 - +0.3 1,956,731 - +0.1 1,956,731 - -1.0
Or see this region's nucleotide sequence