Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09210

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,943,224	+				-0.3
1,943,224	+				-2.2
1,943,224	+				-0.2
1,943,224	+				+0.1
1,943,225	-				+0.5
1,943,225	-				-0.9
1,943,377	+		DZA65_RS09205	0.37	+0.2
1,943,621	+		DZA65_RS09205	0.85	-0.2
1,943,654	+				-1.0
1,943,654	+				+0.7
1,943,676	+				+0.4
1,943,677	-				-1.0
1,943,691	-				-0.6
1,943,691	-				+0.9
1,943,696	+				+0.1
1,943,697	-				+0.8
1,943,697	-				+0.8
1,943,697	-				-1.8
1,943,697	-				-1.8
1,943,697	-				+0.2
1,943,697	-				-1.4
1,943,697	-				-1.4
1,943,699	+				-0.2
1,943,699	+				-0.2
1,943,699	+				-1.2
1,943,700	-				-0.6
1,943,700	-				+1.0
1,943,700	-				+0.6
1,943,700	-				-0.0
1,943,711	+				-1.8
1,943,712	-				+0.9
1,943,723	+				-0.4
1,943,760	+				+0.1
1,943,761	-				-0.1
1,943,797	+				-1.0
1,943,797	+				-0.1
1,943,797	+				+0.8
1,943,798	-				-2.9
1,943,798	-				-1.0
1,943,798	-				-0.1
1,943,800	+				-0.4
1,943,808	+				+0.1
1,943,808	+				+0.9
1,943,808	+				-1.0
1,943,847	+				+1.6
1,943,847	+				-1.8
1,943,848	-				-0.4
1,943,848	-				-0.4
1,943,870	+				+0.6
1,943,905	+				-0.7
1,943,910	+				-0.3
1,943,953	+				+0.1
1,943,971	-				-0.4
1,943,999	+				-0.0
1,943,999	+				-0.0
1,944,014	-				-0.4
1,944,046	+				+1.1
1,944,079	+				+0.4
1,944,111	-				+0.7
1,944,192	-				-0.8
1,944,194	+				-0.0
1,944,338	+		DZA65_RS09210	0.24	+1.6
1,944,339	-		DZA65_RS09210	0.24	-0.6
1,944,339	-		DZA65_RS09210	0.24	-0.4
1,944,442	+		DZA65_RS09210	0.35	-0.0
1,944,443	-		DZA65_RS09210	0.36	+1.0
1,944,521	+		DZA65_RS09210	0.44	+1.3
1,944,521	+		DZA65_RS09210	0.44	+0.6
1,944,521	+		DZA65_RS09210	0.44	-1.6
1,944,521	+		DZA65_RS09210	0.44	+0.4
1,944,521	+		DZA65_RS09210	0.44	-0.1
1,944,521	+		DZA65_RS09210	0.44	+0.6
1,944,522	-		DZA65_RS09210	0.45	+0.3
1,944,522	-		DZA65_RS09210	0.45	-1.0
1,944,522	-		DZA65_RS09210	0.45	+1.9
1,944,522	-		DZA65_RS09210	0.45	+1.4
1,944,522	-		DZA65_RS09210	0.45	-0.2
1,944,522	-		DZA65_RS09210	0.45	+0.3
1,944,522	-		DZA65_RS09210	0.45	+1.3
1,944,522	-		DZA65_RS09210	0.45	-2.8
1,944,524	-		DZA65_RS09210	0.45	-0.8
1,944,524	-		DZA65_RS09210	0.45	+0.1
1,944,581	+		DZA65_RS09210	0.51	-0.8
1,944,754	+				-0.0
1,944,754	+		DZA65_RS09210	0.71	+0.9
1,944,754	+		DZA65_RS09210	0.71	+0.0
1,944,754	+		DZA65_RS09210	0.71	+0.8
1,944,755	-		DZA65_RS09210	0.71	+1.9
1,944,755	-		DZA65_RS09210	0.71	+0.1
1,944,755	-		DZA65_RS09210	0.71	+1.0
1,944,755	-		DZA65_RS09210	0.71	-0.0
1,944,755	-		DZA65_RS09210	0.71	+1.0
1,944,782	-		DZA65_RS09210	0.74	-0.2
1,944,859	-		DZA65_RS09210	0.83	+1.4
1,944,966	+				-0.6
1,944,967	-				-1.0
1,944,967	-				-1.3
1,944,976	-				+0.3
1,944,978	+				-0.3
1,945,029	+				+0.3
1,945,029	+				-1.6
1,945,030	-				-0.6
1,945,030	-				-0.0
1,945,032	-				+0.9
1,945,032	-				+0.9
1,945,032	-				+0.4
1,945,047	+				-1.4
1,945,047	+				-0.4
1,945,047	+				+0.3
1,945,047	+				-0.4
1,945,047	+				+0.8
1,945,047	+				-0.7
1,945,047	+				-0.2
1,945,047	+				+0.6
1,945,047	+				-0.3
1,945,048	-				-2.0
1,945,048	-				+0.0
1,945,048	-				-0.1
1,945,048	-				+0.1
1,945,049	+				-1.5
1,945,050	-				+0.4
1,945,050	-				+1.0
1,945,050	-				-0.4
1,945,050	-				-1.2
1,945,065	+				-0.2
1,945,065	+				-1.2
1,945,065	+				-0.2
1,945,065	+				+1.0
1,945,065	+				-1.9
1,945,066	-				-0.3
1,945,066	-				+0.6
1,945,066	-				+0.6
1,945,066	-				-1.4
1,945,066	-				+0.1
1,945,066	-				+1.1
1,945,066	-				-0.2
1,945,066	-				-1.0
1,945,066	-				+0.5
1,945,066	-				+3.1
1,945,069	+				+0.6
1,945,069	+				-0.1
1,945,069	+				-0.9
1,945,069	+				-1.8
1,945,070	-				+0.8
1,945,070	-				+0.6
1,945,070	-				+1.0
1,945,070	-				-0.2
1,945,070	-				+0.1
1,945,083	+				+1.1
1,945,083	+				+0.6
1,945,083	+				+0.1
1,945,083	+				-0.1
1,945,084	-				-0.4
1,945,084	-				+0.8
1,945,084	-				+0.6
1,945,084	-				-1.0
1,945,084	-				+0.4
1,945,084	-				-1.4
1,945,087	+				-0.2
1,945,087	+				-0.2
1,945,088	-				+0.6
1,945,088	-				-0.5
1,945,088	-				-0.6
1,945,328	-				-0.1
1,945,352	-				-0.0
1,945,354	+				-0.9
1,945,388	-				+1.0
1,945,388	-				+1.1
1,945,392	-				-1.2
1,945,392	-				+0.6
1,945,400	+				+0.2
1,945,431	+				+0.3
1,945,432	-				+0.6
1,945,432	-				+0.6
1,945,432	-				+1.9
1,945,517	+		DZA65_RS09215	0.16	+0.6
1,945,517	+		DZA65_RS09215	0.16	+1.1
1,945,517	+		DZA65_RS09215	0.16	-0.6
1,945,517	+		DZA65_RS09215	0.16	-1.4
1,945,517	+		DZA65_RS09215	0.16	+0.8
1,945,517	+		DZA65_RS09215	0.16	-0.1
1,945,517	+		DZA65_RS09215	0.16	-0.4
1,945,517	+		DZA65_RS09215	0.16	-1.1
1,945,517	+		DZA65_RS09215	0.16	-2.0
1,945,518	-		DZA65_RS09215	0.16	-0.6
1,945,518	-		DZA65_RS09215	0.16	+0.4
1,945,518	-		DZA65_RS09215	0.16	+1.9
1,945,585	+		DZA65_RS09215	0.29	-1.2
1,945,586	-		DZA65_RS09215	0.29	-0.6
1,945,634	-		DZA65_RS09215	0.39	-0.1
1,945,634	-		DZA65_RS09215	0.39	-2.2
1,945,634	-		DZA65_RS09215	0.39	-0.9
1,945,634	-		DZA65_RS09215	0.39	-0.2
1,945,666	+		DZA65_RS09215	0.45	+0.6
1,945,666	+		DZA65_RS09215	0.45	+0.3
1,945,667	-		DZA65_RS09215	0.45	-0.6
1,945,681	+		DZA65_RS09215	0.48	+0.5
1,945,681	+		DZA65_RS09215	0.48	-0.8
1,945,682	-		DZA65_RS09215	0.48	-0.3
1,945,684	+		DZA65_RS09215	0.49	+0.6
1,945,684	+		DZA65_RS09215	0.49	-0.3
1,945,685	-		DZA65_RS09215	0.49	-0.7
1,945,685	-		DZA65_RS09215	0.49	-0.0
1,945,685	-		DZA65_RS09215	0.49	-1.3
1,945,685	-		DZA65_RS09215	0.49	+1.8
1,945,735	+		DZA65_RS09215	0.58	+0.2
1,945,736	-		DZA65_RS09215	0.59	+0.6
1,945,761	+		DZA65_RS09215	0.64	-1.0
1,945,879	+		DZA65_RS09215	0.87	-0.3
1,945,932	-				-0.1
1,945,945	+				+0.6
1,945,946	-				+0.6
1,945,946	-				+0.6
1,945,946	-				-0.1
1,945,956	+				-0.2
1,945,957	-				+0.8