Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08360 and DZA65_RS08365 are separated by 219 nucleotides DZA65_RS08365 and DZA65_RS08370 are separated by 268 nucleotides
DZA65_RS08360: DZA65_RS08360 - LysR family transcriptional regulator, at 1,762,831 to 1,763,757
_RS08360
DZA65_RS08365: DZA65_RS08365 - CDP-diacylglycerol diphosphatase, at 1,763,977 to 1,764,741
_RS08365
DZA65_RS08370: DZA65_RS08370 - LysR family transcriptional regulator, at 1,765,010 to 1,765,909
_RS08370
Position (kb) 1763
1764
1765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1762.981 kb on + strand, within DZA65_RS08360 at 1762.981 kb on + strand, within DZA65_RS08360 at 1762.982 kb on - strand, within DZA65_RS08360 at 1762.982 kb on - strand, within DZA65_RS08360 at 1763.063 kb on - strand, within DZA65_RS08360 at 1763.078 kb on + strand, within DZA65_RS08360 at 1763.078 kb on + strand, within DZA65_RS08360 at 1763.078 kb on + strand, within DZA65_RS08360 at 1763.078 kb on + strand, within DZA65_RS08360 at 1763.078 kb on + strand, within DZA65_RS08360 at 1763.078 kb on + strand, within DZA65_RS08360 at 1763.078 kb on + strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.079 kb on - strand, within DZA65_RS08360 at 1763.162 kb on + strand, within DZA65_RS08360 at 1763.162 kb on + strand, within DZA65_RS08360 at 1763.163 kb on - strand, within DZA65_RS08360 at 1763.282 kb on - strand, within DZA65_RS08360 at 1763.345 kb on - strand, within DZA65_RS08360 at 1763.345 kb on - strand at 1763.381 kb on + strand, within DZA65_RS08360 at 1763.382 kb on - strand, within DZA65_RS08360 at 1763.382 kb on - strand, within DZA65_RS08360 at 1763.382 kb on - strand, within DZA65_RS08360 at 1763.541 kb on + strand, within DZA65_RS08360 at 1763.541 kb on + strand, within DZA65_RS08360 at 1763.541 kb on + strand, within DZA65_RS08360 at 1763.541 kb on + strand, within DZA65_RS08360 at 1763.542 kb on - strand, within DZA65_RS08360 at 1763.542 kb on - strand, within DZA65_RS08360 at 1763.743 kb on + strand at 1763.743 kb on + strand at 1763.743 kb on + strand at 1763.743 kb on + strand at 1763.743 kb on + strand at 1763.744 kb on - strand at 1763.744 kb on - strand at 1763.836 kb on + strand at 1763.837 kb on - strand at 1763.847 kb on - strand at 1763.889 kb on + strand at 1763.890 kb on - strand at 1763.890 kb on - strand at 1763.890 kb on - strand at 1763.890 kb on - strand at 1763.890 kb on - strand at 1763.890 kb on - strand at 1763.901 kb on + strand at 1763.901 kb on + strand at 1763.902 kb on - strand at 1763.902 kb on - strand at 1763.902 kb on - strand at 1763.902 kb on - strand at 1763.902 kb on - strand at 1763.926 kb on + strand at 1763.927 kb on - strand at 1763.978 kb on + strand at 1763.978 kb on + strand at 1763.979 kb on - strand at 1763.979 kb on - strand at 1764.107 kb on + strand, within DZA65_RS08365 at 1764.108 kb on - strand at 1764.140 kb on + strand, within DZA65_RS08365 at 1764.140 kb on + strand, within DZA65_RS08365 at 1764.140 kb on + strand, within DZA65_RS08365 at 1764.140 kb on + strand, within DZA65_RS08365 at 1764.140 kb on + strand, within DZA65_RS08365 at 1764.140 kb on + strand, within DZA65_RS08365 at 1764.141 kb on - strand, within DZA65_RS08365 at 1764.141 kb on - strand, within DZA65_RS08365 at 1764.141 kb on - strand, within DZA65_RS08365 at 1764.141 kb on - strand, within DZA65_RS08365 at 1764.141 kb on - strand, within DZA65_RS08365 at 1764.141 kb on - strand, within DZA65_RS08365 at 1764.206 kb on + strand, within DZA65_RS08365 at 1764.206 kb on + strand, within DZA65_RS08365 at 1764.206 kb on + strand, within DZA65_RS08365 at 1764.207 kb on - strand, within DZA65_RS08365 at 1764.207 kb on - strand, within DZA65_RS08365 at 1764.207 kb on - strand, within DZA65_RS08365 at 1764.207 kb on - strand, within DZA65_RS08365 at 1764.207 kb on - strand, within DZA65_RS08365 at 1764.285 kb on - strand, within DZA65_RS08365 at 1764.285 kb on - strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.309 kb on + strand, within DZA65_RS08365 at 1764.310 kb on - strand, within DZA65_RS08365 at 1764.310 kb on - strand, within DZA65_RS08365 at 1764.310 kb on - strand, within DZA65_RS08365 at 1764.310 kb on - strand, within DZA65_RS08365 at 1764.437 kb on + strand, within DZA65_RS08365 at 1764.437 kb on + strand, within DZA65_RS08365 at 1764.438 kb on - strand, within DZA65_RS08365 at 1764.438 kb on - strand, within DZA65_RS08365 at 1764.545 kb on + strand, within DZA65_RS08365 at 1764.545 kb on + strand, within DZA65_RS08365 at 1764.545 kb on + strand, within DZA65_RS08365 at 1764.545 kb on + strand, within DZA65_RS08365 at 1764.545 kb on + strand, within DZA65_RS08365 at 1764.545 kb on + strand, within DZA65_RS08365 at 1764.546 kb on - strand, within DZA65_RS08365 at 1764.546 kb on - strand, within DZA65_RS08365 at 1764.546 kb on - strand, within DZA65_RS08365 at 1764.546 kb on - strand, within DZA65_RS08365 at 1764.546 kb on - strand, within DZA65_RS08365 at 1764.546 kb on - strand, within DZA65_RS08365 at 1764.546 kb on - strand, within DZA65_RS08365 at 1764.673 kb on + strand at 1764.673 kb on + strand at 1764.673 kb on + strand at 1764.673 kb on + strand at 1764.673 kb on + strand at 1764.673 kb on + strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.674 kb on - strand at 1764.677 kb on + strand at 1764.677 kb on + strand at 1764.677 kb on + strand at 1764.677 kb on + strand at 1764.677 kb on + strand at 1764.677 kb on + strand at 1764.677 kb on + strand at 1764.678 kb on - strand at 1764.678 kb on - strand at 1764.678 kb on - strand at 1764.705 kb on + strand at 1764.705 kb on + strand at 1764.725 kb on + strand at 1764.725 kb on + strand at 1764.726 kb on - strand at 1764.726 kb on - strand at 1764.726 kb on - strand at 1764.726 kb on - strand at 1764.726 kb on - strand at 1764.726 kb on - strand at 1764.736 kb on + strand at 1764.736 kb on + strand at 1764.737 kb on - strand at 1764.804 kb on + strand at 1764.804 kb on + strand at 1764.805 kb on - strand at 1764.805 kb on - strand at 1764.873 kb on + strand at 1764.873 kb on + strand at 1764.873 kb on + strand at 1764.873 kb on + strand at 1764.873 kb on + strand at 1764.874 kb on - strand at 1764.874 kb on - strand at 1764.874 kb on - strand at 1764.879 kb on + strand at 1764.889 kb on + strand at 1764.895 kb on + strand at 1764.895 kb on + strand at 1764.911 kb on + strand at 1764.912 kb on - strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.920 kb on + strand at 1764.921 kb on - strand at 1764.921 kb on - strand at 1764.921 kb on - strand at 1764.921 kb on - strand at 1764.921 kb on - strand at 1764.921 kb on - strand at 1764.933 kb on - strand at 1764.933 kb on - strand at 1764.952 kb on + strand at 1764.963 kb on + strand at 1764.963 kb on + strand at 1764.963 kb on + strand at 1764.964 kb on - strand at 1765.057 kb on + strand at 1765.057 kb on + strand at 1765.111 kb on - strand, within DZA65_RS08370 at 1765.174 kb on + strand, within DZA65_RS08370 at 1765.280 kb on - strand, within DZA65_RS08370 at 1765.280 kb on - strand, within DZA65_RS08370 at 1765.531 kb on + strand, within DZA65_RS08370 at 1765.531 kb on + strand, within DZA65_RS08370 at 1765.532 kb on - strand, within DZA65_RS08370 at 1765.532 kb on - strand, within DZA65_RS08370 at 1765.686 kb on + strand, within DZA65_RS08370 at 1765.687 kb on - strand, within DZA65_RS08370 at 1765.714 kb on + strand, within DZA65_RS08370 at 1765.714 kb on + strand, within DZA65_RS08370 at 1765.715 kb on - strand, within DZA65_RS08370 at 1765.715 kb on - strand, within DZA65_RS08370 at 1765.715 kb on - strand, within DZA65_RS08370 at 1765.715 kb on - strand, within DZA65_RS08370
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,762,981 + DZA65_RS08360 0.16 +0.0 1,762,981 + DZA65_RS08360 0.16 -0.7 1,762,982 - DZA65_RS08360 0.16 -0.7 1,762,982 - DZA65_RS08360 0.16 -1.0 1,763,063 - DZA65_RS08360 0.25 +0.6 1,763,078 + DZA65_RS08360 0.27 -0.1 1,763,078 + DZA65_RS08360 0.27 -0.8 1,763,078 + DZA65_RS08360 0.27 -0.5 1,763,078 + DZA65_RS08360 0.27 +0.0 1,763,078 + DZA65_RS08360 0.27 -0.7 1,763,078 + DZA65_RS08360 0.27 -1.0 1,763,078 + DZA65_RS08360 0.27 +0.4 1,763,079 - DZA65_RS08360 0.27 -0.4 1,763,079 - DZA65_RS08360 0.27 +0.2 1,763,079 - DZA65_RS08360 0.27 +2.0 1,763,079 - DZA65_RS08360 0.27 -1.2 1,763,079 - DZA65_RS08360 0.27 -0.6 1,763,079 - DZA65_RS08360 0.27 +0.2 1,763,079 - DZA65_RS08360 0.27 +1.6 1,763,079 - DZA65_RS08360 0.27 -0.0 1,763,079 - DZA65_RS08360 0.27 -0.4 1,763,162 + DZA65_RS08360 0.36 -2.0 1,763,162 + DZA65_RS08360 0.36 -0.2 1,763,163 - DZA65_RS08360 0.36 +0.8 1,763,282 - DZA65_RS08360 0.49 +0.6 1,763,345 - DZA65_RS08360 0.55 +0.8 1,763,345 - -0.1 1,763,381 + DZA65_RS08360 0.59 -2.2 1,763,382 - DZA65_RS08360 0.59 -0.6 1,763,382 - DZA65_RS08360 0.59 +1.5 1,763,382 - DZA65_RS08360 0.59 -0.1 1,763,541 + DZA65_RS08360 0.77 -0.6 1,763,541 + DZA65_RS08360 0.77 +0.2 1,763,541 + DZA65_RS08360 0.77 -0.7 1,763,541 + DZA65_RS08360 0.77 -0.1 1,763,542 - DZA65_RS08360 0.77 -1.6 1,763,542 - DZA65_RS08360 0.77 +0.6 1,763,743 + +0.1 1,763,743 + -0.1 1,763,743 + +1.6 1,763,743 + -0.1 1,763,743 + -0.1 1,763,744 - -1.4 1,763,744 - -0.4 1,763,836 + -2.8 1,763,837 - -0.1 1,763,847 - +0.8 1,763,889 + -0.4 1,763,890 - -1.2 1,763,890 - +0.0 1,763,890 - -1.2 1,763,890 - +5.1 1,763,890 - +0.8 1,763,890 - +0.9 1,763,901 + -0.4 1,763,901 + +1.0 1,763,902 - +0.4 1,763,902 - -0.4 1,763,902 - +1.8 1,763,902 - +0.0 1,763,902 - +0.6 1,763,926 + +1.6 1,763,927 - +0.6 1,763,978 + +1.4 1,763,978 + -0.7 1,763,979 - -0.6 1,763,979 - -0.1 1,764,107 + DZA65_RS08365 0.17 +0.1 1,764,108 - +0.2 1,764,140 + DZA65_RS08365 0.21 -1.5 1,764,140 + DZA65_RS08365 0.21 -0.6 1,764,140 + DZA65_RS08365 0.21 -0.6 1,764,140 + DZA65_RS08365 0.21 -0.5 1,764,140 + DZA65_RS08365 0.21 -0.7 1,764,140 + DZA65_RS08365 0.21 +0.9 1,764,141 - DZA65_RS08365 0.21 -0.4 1,764,141 - DZA65_RS08365 0.21 +0.3 1,764,141 - DZA65_RS08365 0.21 -1.2 1,764,141 - DZA65_RS08365 0.21 -1.7 1,764,141 - DZA65_RS08365 0.21 -0.7 1,764,141 - DZA65_RS08365 0.21 -1.7 1,764,206 + DZA65_RS08365 0.30 +0.4 1,764,206 + DZA65_RS08365 0.30 -0.4 1,764,206 + DZA65_RS08365 0.30 +0.6 1,764,207 - DZA65_RS08365 0.30 -1.0 1,764,207 - DZA65_RS08365 0.30 +0.9 1,764,207 - DZA65_RS08365 0.30 +0.2 1,764,207 - DZA65_RS08365 0.30 -2.0 1,764,207 - DZA65_RS08365 0.30 +0.2 1,764,285 - DZA65_RS08365 0.40 -0.4 1,764,285 - DZA65_RS08365 0.40 +0.5 1,764,309 + DZA65_RS08365 0.43 -1.4 1,764,309 + DZA65_RS08365 0.43 -1.4 1,764,309 + DZA65_RS08365 0.43 +2.2 1,764,309 + DZA65_RS08365 0.43 +0.1 1,764,309 + DZA65_RS08365 0.43 -0.4 1,764,309 + DZA65_RS08365 0.43 -0.4 1,764,309 + DZA65_RS08365 0.43 -0.4 1,764,309 + DZA65_RS08365 0.43 +0.1 1,764,309 + DZA65_RS08365 0.43 +0.5 1,764,309 + DZA65_RS08365 0.43 -2.6 1,764,310 - DZA65_RS08365 0.44 -0.8 1,764,310 - DZA65_RS08365 0.44 -0.9 1,764,310 - DZA65_RS08365 0.44 -0.4 1,764,310 - DZA65_RS08365 0.44 +1.1 1,764,437 + DZA65_RS08365 0.60 -0.6 1,764,437 + DZA65_RS08365 0.60 +0.3 1,764,438 - DZA65_RS08365 0.60 +0.2 1,764,438 - DZA65_RS08365 0.60 -0.6 1,764,545 + DZA65_RS08365 0.74 +0.2 1,764,545 + DZA65_RS08365 0.74 -0.0 1,764,545 + DZA65_RS08365 0.74 -0.5 1,764,545 + DZA65_RS08365 0.74 -1.0 1,764,545 + DZA65_RS08365 0.74 +0.2 1,764,545 + DZA65_RS08365 0.74 -0.6 1,764,546 - DZA65_RS08365 0.74 -1.6 1,764,546 - DZA65_RS08365 0.74 -0.6 1,764,546 - DZA65_RS08365 0.74 -0.4 1,764,546 - DZA65_RS08365 0.74 -1.4 1,764,546 - DZA65_RS08365 0.74 -0.8 1,764,546 - DZA65_RS08365 0.74 +1.0 1,764,546 - DZA65_RS08365 0.74 -1.4 1,764,673 + +0.4 1,764,673 + -1.7 1,764,673 + +0.4 1,764,673 + +1.8 1,764,673 + +2.4 1,764,673 + +0.3 1,764,674 - -1.0 1,764,674 - -0.4 1,764,674 - +1.0 1,764,674 - +1.6 1,764,674 - +0.5 1,764,674 - -1.6 1,764,674 - +0.4 1,764,674 - -0.0 1,764,674 - +1.5 1,764,674 - +0.0 1,764,677 + +0.3 1,764,677 + -2.7 1,764,677 + -2.0 1,764,677 + +0.5 1,764,677 + -2.3 1,764,677 + +0.6 1,764,677 + +3.6 1,764,678 - +0.4 1,764,678 - -0.1 1,764,678 - +1.4 1,764,705 + -0.6 1,764,705 + -1.0 1,764,725 + -1.4 1,764,725 + -0.0 1,764,726 - -1.0 1,764,726 - +0.0 1,764,726 - +0.5 1,764,726 - -1.0 1,764,726 - +0.7 1,764,726 - -1.4 1,764,736 + -1.4 1,764,736 + +1.4 1,764,737 - -1.4 1,764,804 + +0.6 1,764,804 + -0.1 1,764,805 - -0.6 1,764,805 - -0.6 1,764,873 + -0.4 1,764,873 + -0.0 1,764,873 + -1.4 1,764,873 + +0.6 1,764,873 + -0.2 1,764,874 - +0.3 1,764,874 - +0.3 1,764,874 - -1.7 1,764,879 + -0.2 1,764,889 + -1.4 1,764,895 + -0.7 1,764,895 + +0.1 1,764,911 + -0.6 1,764,912 - -0.7 1,764,920 + +0.5 1,764,920 + -2.0 1,764,920 + +0.8 1,764,920 + +0.6 1,764,920 + -1.4 1,764,920 + +0.0 1,764,920 + -0.8 1,764,920 + +1.2 1,764,920 + -0.4 1,764,921 - +1.4 1,764,921 - +0.3 1,764,921 - -0.2 1,764,921 - +0.6 1,764,921 - +0.1 1,764,921 - +0.2 1,764,933 - +0.7 1,764,933 - -0.4 1,764,952 + +0.3 1,764,963 + -0.8 1,764,963 + -0.4 1,764,963 + -1.6 1,764,964 - +0.4 1,765,057 + +0.6 1,765,057 + +2.0 1,765,111 - DZA65_RS08370 0.11 +0.2 1,765,174 + DZA65_RS08370 0.18 +0.6 1,765,280 - DZA65_RS08370 0.30 -0.6 1,765,280 - DZA65_RS08370 0.30 -1.0 1,765,531 + DZA65_RS08370 0.58 +1.1 1,765,531 + DZA65_RS08370 0.58 +0.0 1,765,532 - DZA65_RS08370 0.58 -0.4 1,765,532 - DZA65_RS08370 0.58 -1.8 1,765,686 + DZA65_RS08370 0.75 -1.0 1,765,687 - DZA65_RS08370 0.75 -0.1 1,765,714 + DZA65_RS08370 0.78 +0.3 1,765,714 + DZA65_RS08370 0.78 -0.4 1,765,715 - DZA65_RS08370 0.78 +0.2 1,765,715 - DZA65_RS08370 0.78 +0.0 1,765,715 - DZA65_RS08370 0.78 -0.8 1,765,715 - DZA65_RS08370 0.78 +1.1
Or see this region's nucleotide sequence