Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07965

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,663,247	-		DZA65_RS07955	0.43	+0.3
1,663,293	-		DZA65_RS07955	0.53	-0.5
1,663,298	+		DZA65_RS07955	0.54	+1.3
1,663,298	+		DZA65_RS07955	0.54	-0.6
1,663,298	+		DZA65_RS07955	0.54	+0.5
1,663,299	-		DZA65_RS07955	0.54	-1.7
1,663,299	-		DZA65_RS07955	0.54	+1.1
1,663,299	-		DZA65_RS07955	0.54	-0.2
1,663,299	-		DZA65_RS07955	0.54	-0.9
1,663,381	+		DZA65_RS07955	0.72	+1.7
1,663,382	-		DZA65_RS07955	0.73	-1.0
1,663,385	+		DZA65_RS07955	0.73	-0.5
1,663,385	+		DZA65_RS07955	0.73	-0.1
1,663,385	+		DZA65_RS07955	0.73	-1.4
1,663,386	-		DZA65_RS07955	0.74	+0.1
1,663,386	-		DZA65_RS07955	0.74	-1.2
1,663,386	-		DZA65_RS07955	0.74	-0.7
1,663,386	-		DZA65_RS07955	0.74	-0.1
1,663,386	-		DZA65_RS07955	0.74	-1.2
1,663,452	+		DZA65_RS07955	0.88	-0.6
1,663,478	-				+1.4
1,663,496	-				-1.1
1,663,969	+		DZA65_RS07960	0.81	-1.2
1,664,020	-				-0.7
1,664,055	+				-0.8
1,664,055	+				+0.2
1,664,056	-				+1.1
1,664,056	-				-0.7
1,664,079	+				-0.2
1,664,079	+				-0.7
1,664,079	+				-2.3
1,664,079	+				+0.5
1,664,079	+				-0.9
1,664,079	+				-1.1
1,664,079	+				+0.1
1,664,079	+				+0.4
1,664,079	+				+1.9
1,664,079	+				-1.2
1,664,079	+				+0.2
1,664,079	+				-0.3
1,664,079	+				-0.4
1,664,080	-				-0.4
1,664,080	-				-1.5
1,664,080	-				-1.2
1,664,080	-				-0.6
1,664,080	-				-0.1
1,664,080	-				-0.0
1,664,080	-				-0.8
1,664,080	-				-0.5
1,664,080	-				+0.7
1,664,080	-				-0.6
1,664,128	+				+1.2
1,664,128	+				-0.1
1,664,128	+				-0.8
1,664,128	+				+0.1
1,664,129	-				+0.6
1,664,235	-		DZA65_RS07965	0.15	-0.8
1,664,238	+		DZA65_RS07965	0.15	+0.5
1,664,239	-		DZA65_RS07965	0.15	+1.2
1,664,239	-		DZA65_RS07965	0.15	-0.3
1,664,387	+		DZA65_RS07965	0.28	-1.3
1,664,388	-		DZA65_RS07965	0.29	-0.7
1,664,400	+		DZA65_RS07965	0.30	+0.2
1,664,400	+		DZA65_RS07965	0.30	-0.0
1,664,400	+		DZA65_RS07965	0.30	+1.2
1,664,400	+		DZA65_RS07965	0.30	-1.3
1,664,401	-		DZA65_RS07965	0.30	+0.2
1,664,401	-		DZA65_RS07965	0.30	-0.5
1,664,401	-		DZA65_RS07965	0.30	-1.9
1,664,439	+		DZA65_RS07965	0.33	-0.3
1,664,439	+		DZA65_RS07965	0.33	-0.6
1,664,439	+		DZA65_RS07965	0.33	+0.6
1,664,439	+		DZA65_RS07965	0.33	-0.3
1,664,439	+		DZA65_RS07965	0.33	+0.3
1,664,439	+		DZA65_RS07965	0.33	-0.3
1,664,439	+		DZA65_RS07965	0.33	-1.7
1,664,439	+		DZA65_RS07965	0.33	-0.9
1,664,440	-		DZA65_RS07965	0.33	-0.0
1,664,440	-		DZA65_RS07965	0.33	+0.8
1,664,440	-		DZA65_RS07965	0.33	-0.8
1,664,440	-		DZA65_RS07965	0.33	-1.9
1,664,440	-		DZA65_RS07965	0.33	-0.7
1,664,440	-		DZA65_RS07965	0.33	-2.5
1,664,440	-		DZA65_RS07965	0.33	-0.6
1,664,440	-		DZA65_RS07965	0.33	-0.6
1,664,440	-		DZA65_RS07965	0.33	+0.9
1,664,440	-		DZA65_RS07965	0.33	-0.9
1,664,440	-		DZA65_RS07965	0.33	-0.7
1,664,440	-		DZA65_RS07965	0.33	-0.1
1,664,440	-		DZA65_RS07965	0.33	-2.2
1,664,440	-		DZA65_RS07965	0.33	+0.4
1,664,440	-		DZA65_RS07965	0.33	-1.2
1,664,440	-		DZA65_RS07965	0.33	-1.2
1,664,445	+		DZA65_RS07965	0.34	+0.7
1,664,445	+		DZA65_RS07965	0.34	-0.9
1,664,445	+		DZA65_RS07965	0.34	+0.2
1,664,445	+		DZA65_RS07965	0.34	+0.1
1,664,445	+		DZA65_RS07965	0.34	+1.0
1,664,445	+		DZA65_RS07965	0.34	-0.3
1,664,445	+		DZA65_RS07965	0.34	-0.9
1,664,446	-		DZA65_RS07965	0.34	-1.5
1,664,446	-		DZA65_RS07965	0.34	+1.2
1,664,446	-		DZA65_RS07965	0.34	-0.5
1,664,446	-		DZA65_RS07965	0.34	-0.3
1,664,446	-		DZA65_RS07965	0.34	-0.8
1,664,446	-		DZA65_RS07965	0.34	+0.4
1,664,446	-		DZA65_RS07965	0.34	-1.0
1,664,446	-		DZA65_RS07965	0.34	+0.9
1,664,446	-		DZA65_RS07965	0.34	+0.8
1,664,446	-		DZA65_RS07965	0.34	-1.3
1,664,446	-		DZA65_RS07965	0.34	-0.5
1,664,446	-		DZA65_RS07965	0.34	-0.6
1,664,448	-		DZA65_RS07965	0.34	-0.6
1,664,609	+		DZA65_RS07965	0.49	+0.3
1,664,632	-		DZA65_RS07965	0.51	-1.3
1,664,632	-		DZA65_RS07965	0.51	+0.2
1,664,722	-		DZA65_RS07965	0.59	+0.1
1,664,763	+		DZA65_RS07965	0.63	+0.8
1,664,881	-		DZA65_RS07965	0.74	+0.2
1,664,906	-		DZA65_RS07965	0.76	-0.3
1,664,906	-		DZA65_RS07965	0.76	+2.1
1,665,078	+				+0.1
1,665,078	+				+0.8
1,665,078	+				+1.1
1,665,079	-				+0.3
1,665,079	-				+0.4
1,665,079	-				+1.2
1,665,163	+				+0.7
1,665,164	-				-0.3
1,665,164	-				-0.3
1,665,165	+				+0.1
1,665,165	+				+0.5
1,665,165	+				-0.4
1,665,165	+				+0.1
1,665,166	-				-1.9
1,665,166	-				-0.2
1,665,166	-				+0.3
1,665,166	-				-1.2
1,665,166	-				-1.3
1,665,166	-				+1.0
1,665,166	-				-1.3
1,665,512	-		DZA65_RS07970	0.43	-0.6
1,665,543	+		DZA65_RS07970	0.47	+1.0
1,665,616	+		DZA65_RS07970	0.55	+0.7
1,665,616	+		DZA65_RS07970	0.55	+0.3
1,665,617	-		DZA65_RS07970	0.55	+0.1
1,665,655	+		DZA65_RS07970	0.60	-0.7
1,665,655	+		DZA65_RS07970	0.60	-0.1
1,665,655	+		DZA65_RS07970	0.60	+0.1
1,665,655	+		DZA65_RS07970	0.60	+0.2
1,665,656	-		DZA65_RS07970	0.60	+2.7
1,665,656	-		DZA65_RS07970	0.60	-0.0
1,665,656	-		DZA65_RS07970	0.60	+0.9
1,665,656	-		DZA65_RS07970	0.60	-0.0
1,665,656	-		DZA65_RS07970	0.60	-0.3
1,665,686	-		DZA65_RS07970	0.63	+0.5
1,665,686	-		DZA65_RS07970	0.63	+0.1
1,665,686	-		DZA65_RS07970	0.63	-0.3
1,665,686	-		DZA65_RS07970	0.63	+0.7
1,665,686	-		DZA65_RS07970	0.63	-0.9
1,665,785	-		DZA65_RS07970	0.75	+0.1
1,665,892	+		DZA65_RS07970	0.87	-0.2
1,665,892	+		DZA65_RS07970	0.87	-0.3
1,665,892	+		DZA65_RS07970	0.87	-0.3
1,665,893	-		DZA65_RS07970	0.87	+0.7
1,665,893	-		DZA65_RS07970	0.87	-0.3
1,665,893	-		DZA65_RS07970	0.87	+1.0
1,665,893	-		DZA65_RS07970	0.87	-1.5
1,665,893	-		DZA65_RS07970	0.87	+0.7
1,665,893	-		DZA65_RS07970	0.87	-0.1
1,665,893	-		DZA65_RS07970	0.87	-0.9
1,665,893	-		DZA65_RS07970	0.87	-0.8
1,665,955	+				-1.3
1,665,955	+				-0.9
1,666,065	+				-1.5
1,666,074	+				-0.4
1,666,094	+				+0.3
1,666,136	+				+0.6
1,666,136	+		DZA65_RS07975	0.14	-0.7
1,666,137	-		DZA65_RS07975	0.14	+0.1
1,666,137	-		DZA65_RS07975	0.14	+0.2