Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06725

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Atlantic
				remove
1,393,895	-			-0.8
1,393,898	+			+1.3
1,393,898	+			+0.1
1,393,898	+			-0.2
1,393,898	+			-1.7
1,393,899	-			-0.2
1,393,899	-			-0.6
1,393,899	-			-0.5
1,393,899	-			+0.4
1,393,899	-			+0.4
1,393,904	+			+0.3
1,393,906	+			+0.4
1,393,906	+			+0.4
1,393,906	+			+0.0
1,393,906	+			-1.9
1,393,906	+			+2.6
1,393,906	+			-0.1
1,393,906	+			+0.2
1,393,906	+			+0.5
1,393,906	+			+1.8
1,393,906	+			+1.6
1,393,907	-			+0.8
1,393,907	-			+1.5
1,393,910	+			-0.3
1,393,910	+			+1.4
1,393,910	+			-1.4
1,393,910	+			-1.2
1,393,911	-			-1.0
1,393,911	-			+0.5
1,393,911	-			+0.7
1,393,911	-			-2.2
1,393,911	-			+0.1
1,393,911	-			-0.0
1,393,911	-			+0.8
1,393,911	-			+0.2
1,393,911	-			+0.8
1,394,541	-			+0.4
1,394,569	+			-1.1
1,394,569	+			-0.2
1,394,569	+			-0.2
1,394,570	-			+0.5
1,394,597	-			+1.1
1,394,597	-			-3.0
1,394,597	-			-2.4
1,394,634	-			-0.7
1,394,658	+			-1.1
1,394,669	+			+0.6
1,394,670	-			-0.2
1,394,685	+			-0.1
1,394,685	+			+0.9
1,394,686	-			-1.0
1,394,689	+			+0.2
1,394,689	+			-1.3
1,394,689	+			-0.8
1,394,689	+			-0.8
1,394,690	-			-0.1
1,394,690	-			-1.2
1,394,690	-			+1.8
1,394,690	-			-1.5
1,394,690	-			-1.4
1,394,692	-			-0.1
1,394,692	-			-0.2
1,394,733	+			+0.1
1,394,733	+			-0.1
1,394,734	-			-0.4
1,394,738	+			+0.5
1,394,753	+			+0.8
1,394,754	-			-1.4
1,394,754	-			-1.8
1,394,754	-			-0.8
1,394,787	+			-1.1
1,394,787	+			-0.2
1,394,788	-			-0.2
1,394,788	-			-0.8
1,394,794	-			+0.0
1,394,814	+			+0.5
1,394,815	-			+0.7
1,394,841	+			-0.0
1,394,841	+			-0.8
1,394,842	-			+0.3
1,394,842	-			-0.1
1,394,842	-			+0.6
1,394,842	-			+1.0
1,394,858	+			+0.2
1,394,858	+			-1.0
1,394,873	+			+0.5
1,394,873	+			-0.8
1,394,873	+			+0.2
1,394,874	-			+0.8
1,394,874	-			+2.7
1,394,882	+			+0.5
1,394,882	+			+0.2
1,394,883	-			+1.8
1,394,883	-			+0.9
1,394,894	+			+0.1
1,394,894	+			+1.8
1,394,895	-			+0.6
1,394,895	-			+0.6
1,394,895	-			-1.2
1,394,895	-			-0.8
1,394,936	-			+0.5
1,394,983	-			-0.4
1,394,983	-			-0.5
1,394,991	+			+0.5
1,394,991	+			+0.2
1,394,991	+			-0.2
1,394,991	+			-0.7
1,394,991	+			+1.7
1,394,991	+			-1.4
1,394,991	+			+1.4
1,394,991	+			-0.3
1,394,991	+			+0.8
1,394,991	+			-1.2
1,394,991	+			-0.2
1,394,991	+			-0.8
1,394,991	+			-0.5
1,394,991	+			-0.8
1,394,991	+			+0.2
1,394,991	+			-2.0
1,394,992	-			-1.5
1,394,992	-			+0.4
1,394,992	-			-1.2
1,394,992	-			+0.0
1,394,992	-			+0.2
1,394,992	-			+0.7
1,394,992	-			-1.4
1,394,992	-			-0.6
1,394,992	-			-0.2
1,395,047	+			-0.4
1,395,079	-	DZA65_RS06725	0.11	+1.1
1,395,079	-	DZA65_RS06725	0.11	-1.2
1,395,117	+	DZA65_RS06725	0.13	+0.7
1,395,117	+	DZA65_RS06725	0.13	-0.0
1,395,185	-	DZA65_RS06725	0.17	+0.9
1,395,299	+	DZA65_RS06725	0.24	-2.0
1,395,299	+	DZA65_RS06725	0.24	-0.5
1,395,299	+	DZA65_RS06725	0.24	-0.4
1,395,299	+	DZA65_RS06725	0.24	+0.1
1,395,299	+	DZA65_RS06725	0.24	-2.2
1,395,299	+	DZA65_RS06725	0.24	+0.5
1,395,299	+	DZA65_RS06725	0.24	-2.2
1,395,299	+	DZA65_RS06725	0.24	-1.1
1,395,300	-	DZA65_RS06725	0.24	-1.0
1,395,300	-	DZA65_RS06725	0.24	+0.1
1,395,300	-	DZA65_RS06725	0.24	-0.1
1,395,300	-	DZA65_RS06725	0.24	-0.7
1,395,300	-	DZA65_RS06725	0.24	-1.7
1,395,300	-	DZA65_RS06725	0.24	+0.8
1,395,336	+	DZA65_RS06725	0.26	-0.6
1,395,336	+	DZA65_RS06725	0.26	-0.4
1,395,336	+	DZA65_RS06725	0.26	-0.0
1,395,336	+	DZA65_RS06725	0.26	-1.2
1,395,337	-	DZA65_RS06725	0.26	+0.3
1,395,356	+	DZA65_RS06725	0.27	-0.3
1,395,356	+	DZA65_RS06725	0.27	-1.0
1,395,357	-	DZA65_RS06725	0.27	+0.6
1,395,357	-	DZA65_RS06725	0.27	+1.3
1,395,404	+	DZA65_RS06725	0.30	-0.5
1,395,405	-	DZA65_RS06725	0.30	-0.4
1,395,405	-	DZA65_RS06725	0.30	-1.1
1,395,405	-	DZA65_RS06725	0.30	+0.8
1,395,455	+	DZA65_RS06725	0.33	-0.6
1,395,455	+			+0.8
1,395,456	-	DZA65_RS06725	0.33	-2.2
1,395,476	+	DZA65_RS06725	0.34	-0.0
1,395,531	+	DZA65_RS06725	0.38	+0.2
1,395,531	+	DZA65_RS06725	0.38	-1.2
1,395,726	+	DZA65_RS06725	0.49	+0.3
1,395,727	-	DZA65_RS06725	0.49	+1.8
1,395,727	-	DZA65_RS06725	0.49	-0.1
1,395,727	-	DZA65_RS06725	0.49	-0.5
1,395,944	+	DZA65_RS06725	0.62	-1.1
1,395,944	+	DZA65_RS06725	0.62	-0.2
1,395,944	+	DZA65_RS06725	0.62	+0.5
1,395,945	-	DZA65_RS06725	0.62	-0.5
1,395,945	-	DZA65_RS06725	0.62	-1.0
1,395,945	-	DZA65_RS06725	0.62	-2.2
1,395,995	-	DZA65_RS06725	0.65	+1.0
1,395,995	-	DZA65_RS06725	0.65	-1.5
1,396,103	-	DZA65_RS06725	0.72	+1.2
1,396,168	+	DZA65_RS06725	0.75	+0.4
1,396,256	+	DZA65_RS06725	0.81	-0.2
1,396,256	+	DZA65_RS06725	0.81	-0.9
1,396,256	+	DZA65_RS06725	0.81	-0.2
1,396,259	+	DZA65_RS06725	0.81	+0.4
1,396,259	+	DZA65_RS06725	0.81	-1.2
1,396,259	+	DZA65_RS06725	0.81	-0.8
1,396,259	+	DZA65_RS06725	0.81	-0.7
1,396,260	-	DZA65_RS06725	0.81	+0.1
1,396,260	-	DZA65_RS06725	0.81	-0.8
1,396,260	-	DZA65_RS06725	0.81	-0.6
1,396,260	-	DZA65_RS06725	0.81	-0.9
1,396,260	-	DZA65_RS06725	0.81	-0.4
1,396,260	-	DZA65_RS06725	0.81	-0.8
1,396,260	-	DZA65_RS06725	0.81	-0.4
1,396,295	+	DZA65_RS06725	0.83	-2.2
1,396,295	+	DZA65_RS06725	0.83	-2.2
1,396,296	-	DZA65_RS06725	0.83	+0.2
1,396,296	-	DZA65_RS06725	0.83	+2.0
1,396,296	-	DZA65_RS06725	0.83	-0.5
1,396,296	-	DZA65_RS06725	0.83	-0.4
1,396,296	-	DZA65_RS06725	0.83	-1.5
1,396,296	-	DZA65_RS06725	0.83	+0.6
1,396,302	-	DZA65_RS06725	0.83	-0.5
1,396,302	-	DZA65_RS06725	0.83	-0.4
1,396,565	+			+1.2
1,396,565	+			+1.0
1,396,566	-			-0.3
1,396,586	+			-1.0
1,396,586	+			-1.0
1,396,586	+			-1.2
1,396,586	+			-0.6
1,396,587	-			+0.0
1,396,587	-			+0.3
1,396,603	+			-0.2
1,396,603	+			+3.8
1,396,604	-			-0.4
1,396,604	-			-1.2
1,396,604	-			+0.0
1,396,604	-			+0.3
1,396,604	-			-0.6
1,396,604	-			-0.6
1,396,604	-			+0.4
1,396,606	+			-1.2
1,396,607	-			-0.2
1,396,607	-			-1.2
1,396,607	-			-1.7
1,396,607	-			+1.4
1,396,607	-			-1.0
1,396,676	+			+0.1
1,396,676	+			+0.8
1,396,676	+			+2.2
1,396,676	+			-0.2
1,396,676	+			-0.8
1,396,677	-			+2.8
1,396,677	-			-0.5
1,396,677	-			+1.2
1,396,813	+	DZA65_RS06730	0.59	-0.2
1,396,814	-	DZA65_RS06730	0.59	-0.2
1,396,814	-	DZA65_RS06730	0.59	-0.4
1,396,824	-	DZA65_RS06730	0.63	+0.1
1,396,924	+			+0.5
1,396,924	+			+0.2
1,396,924	+			+0.8
1,396,924	+			+1.0
1,396,924	+			-0.8
1,396,924	+			+0.4
1,396,924	+			+2.1
1,396,924	+			-1.5
1,396,924	+			+0.5
1,396,925	-			-2.0
1,396,925	-			+0.2
1,396,925	-			-0.8
1,396,925	-			-1.8
1,396,925	-			-1.0
1,396,928	+			+2.0
1,396,928	+			+1.0
1,396,928	+			-1.2
1,396,928	+			+0.0
1,396,928	+			-1.4
1,396,928	+			+0.3
1,396,928	+			+0.8
1,396,929	-			+0.5
1,396,929	-			+1.4
1,396,980	-			-1.2
1,396,980	-			-0.9
1,396,980	-			+0.7
1,396,980	-			-0.2
1,397,073	+			-0.5
1,397,073	+			-0.0
1,397,074	-			+0.3
1,397,074	-			+3.8
1,397,074	-			+0.0
1,397,087	+			-1.5
1,397,088	-			-0.4
1,397,091	-			+0.1
1,397,121	-			-0.7
1,397,142	-			-0.1
1,397,142	-			-0.2
1,397,206	+			+1.9
1,397,206	+			+0.3
1,397,206	+			+0.6
1,397,206	+			-0.0
1,397,206	+			-0.5
1,397,206	+			-0.2
1,397,206	+			-0.8
1,397,206	+			-0.4
1,397,206	+			+0.8
1,397,206	+			-0.2
1,397,206	+			+0.8
1,397,206	+			-1.2
1,397,206	+			-0.1
1,397,206	+			+0.6
1,397,207	-			+0.9
1,397,207	-			+1.0
1,397,207	-			-0.4
1,397,207	-			+0.6
1,397,207	-			-0.6
1,397,207	-			+0.5
1,397,207	-			+0.5
1,397,207	-			-0.5
1,397,342	-	DZA65_RS06735	0.17	-0.3
1,397,345	+	DZA65_RS06735	0.17	-0.1
1,397,345	+	DZA65_RS06735	0.17	-2.0
1,397,345	+	DZA65_RS06735	0.17	+1.4
1,397,346	-	DZA65_RS06735	0.18	-1.8
1,397,356	+	DZA65_RS06735	0.19	+0.0
1,397,448	+	DZA65_RS06735	0.31	-0.6
1,397,527	+	DZA65_RS06735	0.41	+0.0
1,397,528	-	DZA65_RS06735	0.41	-1.1

Or see this region's nucleotide sequence