Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05825

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,198,970	+		DZA65_RS05820	0.72	+1.1
1,198,970	+		DZA65_RS05820	0.72	-0.5
1,198,970	+		DZA65_RS05820	0.72	+0.2
1,198,971	-		DZA65_RS05820	0.73	+0.8
1,198,971	-		DZA65_RS05820	0.73	+0.2
1,198,971	-		DZA65_RS05820	0.73	-1.2
1,199,015	+		DZA65_RS05820	0.77	-2.2
1,199,015	+		DZA65_RS05820	0.77	+0.1
1,199,015	+		DZA65_RS05820	0.77	-0.5
1,199,016	-		DZA65_RS05820	0.77	+0.5
1,199,016	-		DZA65_RS05820	0.77	-0.2
1,199,016	-		DZA65_RS05820	0.77	+0.8
1,199,016	-		DZA65_RS05820	0.77	+0.0
1,199,016	-		DZA65_RS05820	0.77	+0.5
1,199,024	+		DZA65_RS05820	0.78	-0.8
1,199,030	+		DZA65_RS05820	0.79	-1.5
1,199,030	+		DZA65_RS05820	0.79	-0.8
1,199,030	+		DZA65_RS05820	0.79	-0.6
1,199,031	-		DZA65_RS05820	0.79	-1.1
1,199,036	+		DZA65_RS05820	0.79	+1.2
1,199,036	+		DZA65_RS05820	0.79	-1.5
1,199,036	+		DZA65_RS05820	0.79	+0.2
1,199,036	+		DZA65_RS05820	0.79	+0.2
1,199,036	+		DZA65_RS05820	0.79	+0.0
1,199,036	+		DZA65_RS05820	0.79	-0.8
1,199,036	+		DZA65_RS05820	0.79	-0.5
1,199,036	+		DZA65_RS05820	0.79	-1.2
1,199,036	+		DZA65_RS05820	0.79	-0.5
1,199,036	+		DZA65_RS05820	0.79	-0.5
1,199,037	-		DZA65_RS05820	0.79	+0.7
1,199,044	+				+0.8
1,199,045	-		DZA65_RS05820	0.80	-0.7
1,199,138	+		DZA65_RS05820	0.90	-1.8
1,199,138	+		DZA65_RS05820	0.90	+0.8
1,199,139	-				-0.5
1,199,353	+				+0.1
1,199,357	+				+1.5
1,199,358	-				-0.4
1,199,382	+				-0.3
1,199,383	-				+0.3
1,199,383	-				+0.2
1,199,389	+				-0.2
1,199,714	-		DZA65_RS05825	0.23	-1.5
1,199,714	-		DZA65_RS05825	0.23	+1.3
1,199,768	+		DZA65_RS05825	0.28	-0.2
1,199,769	-		DZA65_RS05825	0.28	-0.1
1,199,769	-				-0.2
1,199,769	-		DZA65_RS05825	0.28	-0.8
1,199,769	-		DZA65_RS05825	0.28	-1.3
1,199,907	+		DZA65_RS05825	0.41	+0.7
1,199,908	-		DZA65_RS05825	0.41	-0.5
1,199,947	+		DZA65_RS05825	0.44	+0.6
1,199,948	-		DZA65_RS05825	0.44	-0.4
1,199,995	+		DZA65_RS05825	0.49	-1.6
1,199,995	+		DZA65_RS05825	0.49	-0.8
1,199,995	+		DZA65_RS05825	0.49	-3.6
1,199,996	-		DZA65_RS05825	0.49	-0.0
1,199,996	-		DZA65_RS05825	0.49	-0.5
1,199,996	-		DZA65_RS05825	0.49	+0.1
1,199,996	-		DZA65_RS05825	0.49	+0.7
1,199,996	-		DZA65_RS05825	0.49	-1.8
1,200,030	+		DZA65_RS05825	0.52	+1.2
1,200,031	-		DZA65_RS05825	0.52	+1.2
1,200,043	+		DZA65_RS05825	0.53	+0.1
1,200,043	+		DZA65_RS05825	0.53	-0.5
1,200,043	+		DZA65_RS05825	0.53	+3.1
1,200,044	-		DZA65_RS05825	0.53	+0.7
1,200,044	-		DZA65_RS05825	0.53	+0.1
1,200,044	-		DZA65_RS05825	0.53	+0.1
1,200,044	-		DZA65_RS05825	0.53	-0.8
1,200,044	-		DZA65_RS05825	0.53	-0.9
1,200,115	+		DZA65_RS05825	0.59	-0.1
1,200,115	+		DZA65_RS05825	0.59	+2.2
1,200,115	+		DZA65_RS05825	0.59	+1.1
1,200,115	+		DZA65_RS05825	0.59	+1.1
1,200,115	+		DZA65_RS05825	0.59	+0.1
1,200,116	-		DZA65_RS05825	0.59	+1.1
1,200,116	-		DZA65_RS05825	0.59	+0.1
1,200,116	-		DZA65_RS05825	0.59	-0.8
1,200,116	-		DZA65_RS05825	0.59	-0.8
1,200,116	-		DZA65_RS05825	0.59	+0.8
1,200,223	+		DZA65_RS05825	0.69	-0.0
1,200,284	-		DZA65_RS05825	0.75	+0.2
1,200,401	+		DZA65_RS05825	0.85	+1.6
1,200,401	+		DZA65_RS05825	0.85	+0.2
1,200,401	+		DZA65_RS05825	0.85	-1.8
1,200,412	-		DZA65_RS05825	0.86	+0.7
1,200,412	-		DZA65_RS05825	0.86	-1.8
1,200,430	+		DZA65_RS05825	0.88	-0.8
1,200,430	+		DZA65_RS05825	0.88	-0.4
1,200,430	+		DZA65_RS05825	0.88	+1.1
1,200,430	+		DZA65_RS05825	0.88	-2.0
1,200,430	+		DZA65_RS05825	0.88	+2.1
1,200,431	-		DZA65_RS05825	0.88	+0.8
1,200,431	-		DZA65_RS05825	0.88	+1.0
1,200,431	-		DZA65_RS05825	0.88	-0.4
1,200,431	-		DZA65_RS05825	0.88	-0.2
1,200,431	-		DZA65_RS05825	0.88	-1.8
1,200,432	+		DZA65_RS05825	0.88	-1.0
1,200,432	+		DZA65_RS05825	0.88	+0.2
1,200,432	+		DZA65_RS05825	0.88	+2.4
1,200,432	+		DZA65_RS05825	0.88	+1.5
1,200,433	-		DZA65_RS05825	0.88	+1.5
1,200,433	-		DZA65_RS05825	0.88	+1.1
1,200,433	-		DZA65_RS05825	0.88	+0.5
1,200,433	-		DZA65_RS05825	0.88	-0.2
1,200,598	+				+1.2
1,200,611	+				-0.5
1,200,633	+				-0.4
1,200,634	-				+1.0
1,200,635	+				-0.7
1,200,635	+				-1.2
1,200,635	+				+0.4
1,200,636	-				+1.1
1,200,636	-				+1.3
1,200,644	-				+1.4
1,200,653	-				+1.0
1,200,656	+				+0.1
1,200,656	+				+1.3
1,200,684	-				-1.1
1,200,707	+				+0.1
1,200,708	-				-0.3
1,200,708	-				-1.5
1,200,708	-				+1.3
1,200,723	+				+0.2
1,200,724	-				-1.0
1,200,724	-				+1.4
1,200,725	+				-0.2
1,200,750	+				+1.1
1,200,772	+				-0.1
1,200,772	+				-0.8
1,200,781	-				-1.0
1,200,781	-				-0.2
1,200,805	-				+0.1
1,200,805	-				-0.4
1,200,814	+				-0.7
1,200,814	+				-0.4
1,200,814	+				-0.5
1,200,815	-				+1.2
1,200,815	-				+0.1
1,200,815	-				+1.1
1,200,815	-				-0.2
1,200,815	-				-2.2
1,200,815	-				+0.2
1,200,815	-				-0.7
1,200,823	-				-0.7
1,200,832	-				-3.6
1,200,858	+				+0.7
1,200,968	+				+0.5
1,200,969	-				+0.8
1,200,969	-				+0.6
1,201,011	-				-1.2
1,201,011	-				-0.2
1,201,031	+				-0.6
1,201,031	+				-0.4
1,201,031	+				-0.2
1,201,031	+				+1.0
1,201,031	+				+1.8
1,201,033	+				-1.3
1,201,033	+				-2.0
1,201,033	+				+0.2
1,201,033	+				-0.8
1,201,033	+				+1.8
1,201,033	+				+0.1
1,201,033	+				+1.0
1,201,033	+				-2.0
1,201,033	+				+1.5
1,201,033	+				+0.5
1,201,033	+				-0.3
1,201,034	-				-0.6
1,201,034	-				+1.2
1,201,034	-				-0.9
1,201,034	-				-0.3
1,201,034	-				+0.6
1,201,034	-				-1.1
1,201,034	-				-0.4
1,201,034	-				+0.8
1,201,034	-				+2.1
1,201,034	-				-0.9
1,201,034	-				-0.8
1,201,034	-				-0.6
1,201,034	-				-1.5
1,201,034	-				-1.1
1,201,034	-				-0.2
1,201,034	-				-0.4
1,201,034	-				-1.2
1,201,034	-				-0.1
1,201,065	+				+0.0
1,201,065	+				-0.3
1,201,065	+				+1.1
1,201,066	-				-0.1
1,201,119	+				-1.1
1,201,119	+				+0.6
1,201,120	-				-2.4
1,201,120	-				-0.5
1,201,120	-				-1.2
1,201,220	+		DZA65_RS05830	0.14	-0.2
1,201,251	+		DZA65_RS05830	0.16	-0.5
1,201,289	+		DZA65_RS05830	0.19	-0.3
1,201,290	-		DZA65_RS05830	0.19	+0.4
1,201,290	-		DZA65_RS05830	0.19	+0.8
1,201,306	+		DZA65_RS05830	0.20	-0.5
1,201,307	-		DZA65_RS05830	0.20	-1.5
1,201,307	-		DZA65_RS05830	0.20	+0.2
1,201,307	-		DZA65_RS05830	0.20	+0.5
1,201,347	+		DZA65_RS05830	0.23	-0.5
1,201,411	+		DZA65_RS05830	0.28	-1.6
1,201,412	-		DZA65_RS05830	0.28	+0.8
1,201,423	+		DZA65_RS05830	0.29	-1.8
1,201,423	+				+0.8
1,201,423	+		DZA65_RS05830	0.29	-1.0
1,201,453	+		DZA65_RS05830	0.31	-0.8
1,201,473	+		DZA65_RS05830	0.33	+0.3
1,201,485	+		DZA65_RS05830	0.34	+0.8
1,201,485	+		DZA65_RS05830	0.34	-0.2
1,201,486	-		DZA65_RS05830	0.34	-0.2
1,201,486	-		DZA65_RS05830	0.34	-1.0