Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05775

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,185,049	-				+0.6
1,185,060	+				-0.8
1,185,060	+				+1.5
1,185,060	+				+1.2
1,185,060	+				+0.1
1,185,060	+				+0.6
1,185,060	+				-0.8
1,185,060	+				-0.3
1,185,061	-				+1.8
1,185,061	-				-0.5
1,185,061	-				+0.5
1,185,061	-				-1.5
1,185,061	-				+0.5
1,185,061	-				-2.5
1,185,119	-				-0.5
1,185,134	+				-1.5
1,185,154	+				-0.6
1,185,154	+				-0.3
1,185,154	+				-0.8
1,185,155	-				-2.7
1,185,155	-				-1.0
1,185,165	-				-0.6
1,185,179	-				-2.2
1,185,179	-				+0.2
1,185,259	-				-1.2
1,185,259	-				-0.8
1,185,268	+				+0.4
1,185,268	+				+0.4
1,185,269	-				-1.3
1,185,277	+				-0.5
1,185,278	-				-0.0
1,185,278	-				+1.1
1,185,278	-				-0.8
1,185,278	-				-0.8
1,185,278	-				-0.4
1,185,278	-				+2.2
1,185,278	-				-1.2
1,185,278	-				-0.3
1,185,350	+				-2.0
1,185,385	-				+2.4
1,185,449	-		DZA65_RS05770	0.16	-1.2
1,185,474	+		DZA65_RS05770	0.20	-0.0
1,185,474	+		DZA65_RS05770	0.20	+0.4
1,185,475	-		DZA65_RS05770	0.21	-0.4
1,185,475	-		DZA65_RS05770	0.21	-0.3
1,185,475	-		DZA65_RS05770	0.21	-1.8
1,185,483	+		DZA65_RS05770	0.22	-0.9
1,185,483	+		DZA65_RS05770	0.22	+1.7
1,185,483	+		DZA65_RS05770	0.22	-1.0
1,185,484	-		DZA65_RS05770	0.22	-0.7
1,185,484	-		DZA65_RS05770	0.22	+0.8
1,185,484	-		DZA65_RS05770	0.22	-1.8
1,185,484	-		DZA65_RS05770	0.22	-0.2
1,185,637	-		DZA65_RS05770	0.52	+0.5
1,185,637	-		DZA65_RS05770	0.52	-2.5
1,185,657	+		DZA65_RS05770	0.56	-1.7
1,185,658	-		DZA65_RS05770	0.56	-0.5
1,185,658	-		DZA65_RS05770	0.56	+0.3
1,185,661	+		DZA65_RS05770	0.56	+1.6
1,185,662	-		DZA65_RS05770	0.57	-0.3
1,185,662	-		DZA65_RS05770	0.57	+0.7
1,185,793	+		DZA65_RS05770	0.82	+0.8
1,185,793	+		DZA65_RS05770	0.82	-1.1
1,185,811	+		DZA65_RS05770	0.85	+1.2
1,185,811	+		DZA65_RS05770	0.85	+0.3
1,185,811	+				-1.8
1,185,811	+		DZA65_RS05770	0.85	+0.3
1,185,811	+		DZA65_RS05770	0.85	+0.5
1,185,811	+		DZA65_RS05770	0.85	+1.1
1,185,812	-		DZA65_RS05770	0.85	+0.5
1,185,812	-		DZA65_RS05770	0.85	-0.6
1,185,812	-		DZA65_RS05770	0.85	+0.6
1,185,812	-		DZA65_RS05770	0.85	+0.3
1,185,812	-		DZA65_RS05770	0.85	+0.2
1,185,812	-		DZA65_RS05770	0.85	+0.4
1,185,812	-		DZA65_RS05770	0.85	-0.3
1,185,924	+				-0.6
1,185,925	-				+1.5
1,185,925	-				-1.5
1,185,936	-				-0.2
1,185,959	+		DZA65_RS05775	0.12	-1.2
1,185,959	+		DZA65_RS05775	0.12	-1.2
1,185,959	+		DZA65_RS05775	0.12	+0.1
1,186,027	+		DZA65_RS05775	0.36	+0.8
1,186,027	+		DZA65_RS05775	0.36	-0.6
1,186,027	+		DZA65_RS05775	0.36	-1.8
1,186,028	-		DZA65_RS05775	0.36	+0.9
1,186,029	+		DZA65_RS05775	0.36	-1.4
1,186,030	-		DZA65_RS05775	0.37	-0.7
1,186,030	-		DZA65_RS05775	0.37	-0.6
1,186,030	-		DZA65_RS05775	0.37	-2.0
1,186,030	-		DZA65_RS05775	0.37	-1.5
1,186,064	+		DZA65_RS05775	0.49	+0.8
1,186,137	+		DZA65_RS05775	0.74	+1.8
1,186,189	+				-0.6
1,186,189	+				-0.8
1,186,190	-				+0.1
1,186,190	-				+1.1
1,186,202	-				+0.2
1,186,219	+				+0.6
1,186,272	+				-0.7
1,186,272	+				+0.3
1,186,272	+				+0.0
1,186,273	-				-0.5
1,186,273	-				+2.7
1,186,275	+				+1.6
1,186,275	+				+2.8
1,186,276	-				-0.9
1,186,294	+				-0.4
1,186,295	-				-0.5
1,186,297	-				-1.9
1,186,297	-				-1.0
1,186,315	-				-0.5
1,186,316	+				-0.1
1,186,316	+				-2.5
1,186,317	-				+0.8
1,186,317	-				-0.3
1,186,334	+				+1.3
1,186,335	-				+0.1
1,186,336	+				-1.2
1,186,337	-				-0.4
1,186,337	-				-1.2
1,186,337	-				-0.2
1,186,337	-				-0.2
1,186,407	+				-1.2
1,186,407	+				-2.4
1,186,408	-				+2.4
1,186,429	+				-0.5
1,186,439	+				+1.2
1,186,493	+				+1.2
1,186,497	+				-0.2
1,186,497	+				+1.1
1,186,497	+				+0.3
1,186,498	-				+0.8
1,186,498	-				-0.1
1,186,511	+				+0.2
1,186,525	+				-0.8
1,186,525	+				-0.0
1,186,525	+				-0.5
1,186,585	-				-0.8
1,186,585	-				-0.2
1,186,585	-				+0.4
1,186,707	+				-2.0
1,186,718	+				+1.5
1,186,718	+				+0.2
1,186,719	-				-1.1
1,186,719	-				-0.4
1,186,719	-				+0.8
1,186,719	-				-0.2
1,186,733	+				-1.2
1,186,791	+				-2.8
1,186,833	+				-1.2
1,186,848	+				-0.5
1,186,848	+				+0.8
1,186,848	+				+0.1
1,186,849	-				+1.1
1,186,849	-				+2.0
1,186,849	-				-0.4
1,186,849	-				+0.0
1,186,855	+				-2.7
1,186,855	+				-0.5
1,186,855	+				-0.3
1,186,855	+				+0.5
1,186,855	+				+1.5
1,186,855	+				-0.0
1,186,856	-				-2.3
1,186,856	-				+2.5
1,186,856	-				-0.8
1,186,856	-				-1.8
1,186,856	-				+0.4
1,186,881	-				+0.4
1,186,899	-				-1.2
1,186,923	+				-1.5
1,186,924	-				-0.6
1,186,928	-				-0.1
1,186,928	-				-0.5
1,186,928	-				-0.2
1,186,945	-				-2.4
1,186,948	+				+2.1
1,186,948	+				+0.8
1,186,957	-				+0.7
1,186,957	-				+1.2
1,186,959	+				-0.4
1,186,959	+				+0.7
1,186,959	+				+1.0
1,186,960	-				-0.2
1,186,965	+				-0.8
1,186,965	+				-0.1
1,186,965	+				+0.2
1,186,965	+				-1.2
1,186,966	-				-0.8
1,186,966	-				-2.3
1,186,966	-				-2.0
1,186,966	-				-1.4
1,186,989	-				-0.0
1,186,989	-				-1.2
1,186,998	+				+0.2
1,187,025	-				+1.2
1,187,028	+				-0.4
1,187,028	+				-0.3
1,187,029	-				-0.8
1,187,029	-				+0.7
1,187,062	+				-0.5
1,187,062	+				-1.2
1,187,062	+				-0.2
1,187,063	-				+0.5
1,187,063	-				+0.8
1,187,063	-				+0.1
1,187,063	-				-2.0
1,187,063	-				+0.3
1,187,063	-				+1.5
1,187,064	+				-1.6
1,187,064	+				+1.1
1,187,065	-				+0.8
1,187,082	+				+0.3
1,187,157	+		DZA65_RS05785	0.11	-0.4
1,187,157	+		DZA65_RS05785	0.11	-1.0
1,187,157	+		DZA65_RS05785	0.11	+0.3
1,187,157	+		DZA65_RS05785	0.11	+0.2
1,187,157	+		DZA65_RS05785	0.11	-0.2
1,187,158	-		DZA65_RS05785	0.11	-0.5
1,187,158	-		DZA65_RS05785	0.11	-0.7
1,187,169	+		DZA65_RS05785	0.12	-1.3