Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05165

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05155 and DZA65_RS05165 are separated by 224 nucleotidesDZA65_RS05165 and DZA65_RS05170 are separated by 4 nucleotidesDZA65_RS05170 and DZA65_RS05175 are separated by 54 nucleotides DZA65_RS05155: DZA65_RS05155 - DUF2786 domain-containing protein, at 1,062,831 to 1,063,523 _RS05155 DZA65_RS05165: DZA65_RS05165 - hypothetical protein, at 1,063,748 to 1,064,080 _RS05165 DZA65_RS05170: DZA65_RS05170 - hypothetical protein, at 1,064,085 to 1,064,849 _RS05170 DZA65_RS05175: DZA65_RS05175 - hypothetical protein, at 1,064,904 to 1,065,356 _RS05175 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1062.751 kb on + strandat 1062.756 kb on + strandat 1062.757 kb on - strandat 1062.757 kb on - strandat 1062.762 kb on + strandat 1062.768 kb on - strandat 1062.818 kb on + strandat 1062.818 kb on + strandat 1062.833 kb on - strandat 1062.833 kb on - strandat 1062.876 kb on + strandat 1062.876 kb on + strandat 1062.876 kb on + strandat 1062.877 kb on - strandat 1062.877 kb on - strandat 1062.901 kb on + strand, within DZA65_RS05155at 1062.901 kb on + strand, within DZA65_RS05155at 1062.913 kb on + strand, within DZA65_RS05155at 1062.914 kb on - strand, within DZA65_RS05155at 1062.914 kb on - strand, within DZA65_RS05155at 1062.957 kb on + strand, within DZA65_RS05155at 1062.966 kb on - strand, within DZA65_RS05155at 1062.966 kb on - strand, within DZA65_RS05155at 1062.966 kb on - strand, within DZA65_RS05155at 1062.988 kb on + strand, within DZA65_RS05155at 1062.989 kb on - strand, within DZA65_RS05155at 1062.991 kb on + strand, within DZA65_RS05155at 1062.991 kb on + strand, within DZA65_RS05155at 1062.991 kb on + strand, within DZA65_RS05155at 1062.991 kb on + strand, within DZA65_RS05155at 1062.991 kb on + strand, within DZA65_RS05155at 1062.992 kb on - strand, within DZA65_RS05155at 1062.992 kb on - strand, within DZA65_RS05155at 1062.992 kb on - strand, within DZA65_RS05155at 1062.992 kb on - strand, within DZA65_RS05155at 1063.029 kb on - strand, within DZA65_RS05155at 1063.029 kb on - strand, within DZA65_RS05155at 1063.103 kb on + strand, within DZA65_RS05155at 1063.104 kb on - strand, within DZA65_RS05155at 1063.118 kb on + strand, within DZA65_RS05155at 1063.119 kb on - strand, within DZA65_RS05155at 1063.156 kb on - strand, within DZA65_RS05155at 1063.168 kb on - strand, within DZA65_RS05155at 1063.168 kb on - strand, within DZA65_RS05155at 1063.170 kb on + strand, within DZA65_RS05155at 1063.170 kb on + strand, within DZA65_RS05155at 1063.171 kb on - strand, within DZA65_RS05155at 1063.171 kb on - strand, within DZA65_RS05155at 1063.171 kb on - strand, within DZA65_RS05155at 1063.184 kb on - strand, within DZA65_RS05155at 1063.217 kb on - strand, within DZA65_RS05155at 1063.226 kb on + strand, within DZA65_RS05155at 1063.227 kb on - strand, within DZA65_RS05155at 1063.227 kb on - strand, within DZA65_RS05155at 1063.255 kb on + strand, within DZA65_RS05155at 1063.255 kb on + strand, within DZA65_RS05155at 1063.255 kb on + strand, within DZA65_RS05155at 1063.255 kb on + strand, within DZA65_RS05155at 1063.256 kb on - strand, within DZA65_RS05155at 1063.256 kb on - strand, within DZA65_RS05155at 1063.258 kb on + strand, within DZA65_RS05155at 1063.259 kb on - strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.309 kb on + strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strandat 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.310 kb on - strand, within DZA65_RS05155at 1063.311 kb on + strand, within DZA65_RS05155at 1063.311 kb on + strand, within DZA65_RS05155at 1063.404 kb on - strand, within DZA65_RS05155at 1063.460 kb on + strandat 1063.461 kb on - strandat 1063.616 kb on - strandat 1063.702 kb on - strandat 1063.846 kb on + strand, within DZA65_RS05165at 1063.861 kb on + strand, within DZA65_RS05165at 1063.955 kb on - strand, within DZA65_RS05165at 1064.149 kb on + strandat 1064.230 kb on + strand, within DZA65_RS05170at 1064.230 kb on + strand, within DZA65_RS05170at 1064.230 kb on + strand, within DZA65_RS05170at 1064.231 kb on - strand, within DZA65_RS05170at 1064.231 kb on - strand, within DZA65_RS05170at 1064.231 kb on - strand, within DZA65_RS05170at 1064.249 kb on + strand, within DZA65_RS05170at 1064.294 kb on - strand, within DZA65_RS05170at 1064.294 kb on - strand, within DZA65_RS05170at 1064.305 kb on - strand, within DZA65_RS05170at 1064.305 kb on - strand, within DZA65_RS05170at 1064.344 kb on - strand, within DZA65_RS05170at 1064.382 kb on + strand, within DZA65_RS05170at 1064.467 kb on + strand, within DZA65_RS05170at 1064.467 kb on + strand, within DZA65_RS05170at 1064.467 kb on + strand, within DZA65_RS05170at 1064.468 kb on - strand, within DZA65_RS05170at 1064.468 kb on - strand, within DZA65_RS05170at 1064.468 kb on - strand, within DZA65_RS05170at 1064.526 kb on + strand, within DZA65_RS05170at 1064.527 kb on - strand, within DZA65_RS05170at 1064.554 kb on + strand, within DZA65_RS05170at 1064.554 kb on + strand, within DZA65_RS05170at 1064.554 kb on + strand, within DZA65_RS05170at 1064.554 kb on + strand, within DZA65_RS05170at 1064.554 kb on + strand, within DZA65_RS05170at 1064.555 kb on - strand, within DZA65_RS05170at 1064.555 kb on - strand, within DZA65_RS05170at 1064.555 kb on - strand, within DZA65_RS05170at 1064.555 kb on - strand, within DZA65_RS05170at 1064.568 kb on - strand, within DZA65_RS05170at 1064.615 kb on + strandat 1064.673 kb on - strand, within DZA65_RS05170at 1064.834 kb on + strandat 1064.839 kb on - strandat 1064.867 kb on + strandat 1064.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,062,751 + -0.3
1,062,756 + +0.5
1,062,757 - +0.8
1,062,757 - +0.4
1,062,762 + -1.7
1,062,768 - +1.0
1,062,818 + +0.8
1,062,818 + -2.5
1,062,833 - -1.0
1,062,833 - +0.5
1,062,876 + -1.1
1,062,876 + -0.5
1,062,876 + -1.7
1,062,877 - +0.2
1,062,877 - -0.2
1,062,901 + DZA65_RS05155 0.10 +0.2
1,062,901 + DZA65_RS05155 0.10 +1.0
1,062,913 + DZA65_RS05155 0.12 -0.4
1,062,914 - DZA65_RS05155 0.12 +0.8
1,062,914 - DZA65_RS05155 0.12 -0.8
1,062,957 + DZA65_RS05155 0.18 +0.0
1,062,966 - DZA65_RS05155 0.19 +0.5
1,062,966 - DZA65_RS05155 0.19 -1.2
1,062,966 - DZA65_RS05155 0.19 +1.6
1,062,988 + DZA65_RS05155 0.23 +0.7
1,062,989 - DZA65_RS05155 0.23 -0.6
1,062,991 + DZA65_RS05155 0.23 +1.3
1,062,991 + DZA65_RS05155 0.23 +0.3
1,062,991 + DZA65_RS05155 0.23 -1.5
1,062,991 + DZA65_RS05155 0.23 +0.8
1,062,991 + DZA65_RS05155 0.23 +1.0
1,062,992 - DZA65_RS05155 0.23 -0.0
1,062,992 - DZA65_RS05155 0.23 +0.1
1,062,992 - DZA65_RS05155 0.23 +0.4
1,062,992 - DZA65_RS05155 0.23 +0.3
1,063,029 - DZA65_RS05155 0.29 +0.3
1,063,029 - DZA65_RS05155 0.29 -0.7
1,063,103 + DZA65_RS05155 0.39 +3.3
1,063,104 - DZA65_RS05155 0.39 +0.8
1,063,118 + DZA65_RS05155 0.41 +1.2
1,063,119 - DZA65_RS05155 0.42 +1.7
1,063,156 - DZA65_RS05155 0.47 +0.8
1,063,168 - DZA65_RS05155 0.49 -2.7
1,063,168 - DZA65_RS05155 0.49 -0.5
1,063,170 + DZA65_RS05155 0.49 -0.1
1,063,170 + DZA65_RS05155 0.49 +0.1
1,063,171 - DZA65_RS05155 0.49 +1.0
1,063,171 - DZA65_RS05155 0.49 +0.5
1,063,171 - DZA65_RS05155 0.49 +0.3
1,063,184 - DZA65_RS05155 0.51 -1.7
1,063,217 - DZA65_RS05155 0.56 +1.2
1,063,226 + DZA65_RS05155 0.57 -0.0
1,063,227 - DZA65_RS05155 0.57 -0.7
1,063,227 - DZA65_RS05155 0.57 +0.8
1,063,255 + DZA65_RS05155 0.61 -0.2
1,063,255 + DZA65_RS05155 0.61 +0.4
1,063,255 + DZA65_RS05155 0.61 -1.0
1,063,255 + DZA65_RS05155 0.61 -0.0
1,063,256 - DZA65_RS05155 0.61 +0.3
1,063,256 - DZA65_RS05155 0.61 +1.8
1,063,258 + DZA65_RS05155 0.62 +0.5
1,063,259 - DZA65_RS05155 0.62 +2.8
1,063,309 + DZA65_RS05155 0.69 +1.4
1,063,309 + DZA65_RS05155 0.69 +0.8
1,063,309 + DZA65_RS05155 0.69 -1.3
1,063,309 + DZA65_RS05155 0.69 +0.6
1,063,309 + DZA65_RS05155 0.69 +0.7
1,063,309 + DZA65_RS05155 0.69 +0.6
1,063,309 + DZA65_RS05155 0.69 +0.5
1,063,309 + DZA65_RS05155 0.69 -0.2
1,063,309 + DZA65_RS05155 0.69 -0.9
1,063,309 + DZA65_RS05155 0.69 -0.7
1,063,309 + DZA65_RS05155 0.69 +0.4
1,063,309 + DZA65_RS05155 0.69 -2.7
1,063,310 - DZA65_RS05155 0.69 -1.7
1,063,310 - DZA65_RS05155 0.69 -0.5
1,063,310 - DZA65_RS05155 0.69 -0.2
1,063,310 - DZA65_RS05155 0.69 -0.2
1,063,310 - DZA65_RS05155 0.69 +0.3
1,063,310 - DZA65_RS05155 0.69 -0.3
1,063,310 - DZA65_RS05155 0.69 +0.6
1,063,310 - DZA65_RS05155 0.69 -0.3
1,063,310 - +1.8
1,063,310 - DZA65_RS05155 0.69 +0.5
1,063,310 - DZA65_RS05155 0.69 +0.2
1,063,310 - DZA65_RS05155 0.69 -1.6
1,063,310 - DZA65_RS05155 0.69 -0.2
1,063,310 - DZA65_RS05155 0.69 +1.1
1,063,310 - DZA65_RS05155 0.69 -0.3
1,063,311 + DZA65_RS05155 0.69 +0.3
1,063,311 + DZA65_RS05155 0.69 +1.1
1,063,404 - DZA65_RS05155 0.83 +0.9
1,063,460 + -0.9
1,063,461 - +1.8
1,063,616 - +0.3
1,063,702 - -1.7
1,063,846 + DZA65_RS05165 0.29 -0.5
1,063,861 + DZA65_RS05165 0.34 -2.2
1,063,955 - DZA65_RS05165 0.62 -0.7
1,064,149 + -0.7
1,064,230 + DZA65_RS05170 0.19 -0.9
1,064,230 + DZA65_RS05170 0.19 +0.3
1,064,230 + DZA65_RS05170 0.19 -0.2
1,064,231 - DZA65_RS05170 0.19 -0.2
1,064,231 - DZA65_RS05170 0.19 +0.8
1,064,231 - DZA65_RS05170 0.19 +0.4
1,064,249 + DZA65_RS05170 0.21 +0.8
1,064,294 - DZA65_RS05170 0.27 -0.7
1,064,294 - DZA65_RS05170 0.27 +0.3
1,064,305 - DZA65_RS05170 0.29 -0.1
1,064,305 - DZA65_RS05170 0.29 +1.3
1,064,344 - DZA65_RS05170 0.34 +0.1
1,064,382 + DZA65_RS05170 0.39 +0.2
1,064,467 + DZA65_RS05170 0.50 -0.3
1,064,467 + DZA65_RS05170 0.50 +0.1
1,064,467 + DZA65_RS05170 0.50 +0.2
1,064,468 - DZA65_RS05170 0.50 -0.2
1,064,468 - DZA65_RS05170 0.50 -0.4
1,064,468 - DZA65_RS05170 0.50 +0.9
1,064,526 + DZA65_RS05170 0.58 +0.8
1,064,527 - DZA65_RS05170 0.58 +2.6
1,064,554 + DZA65_RS05170 0.61 +0.0
1,064,554 + DZA65_RS05170 0.61 +1.5
1,064,554 + DZA65_RS05170 0.61 +0.5
1,064,554 + DZA65_RS05170 0.61 -0.7
1,064,554 + DZA65_RS05170 0.61 +0.4
1,064,555 - DZA65_RS05170 0.61 +0.1
1,064,555 - DZA65_RS05170 0.61 -1.2
1,064,555 - DZA65_RS05170 0.61 -2.2
1,064,555 - DZA65_RS05170 0.61 +1.2
1,064,568 - DZA65_RS05170 0.63 -1.9
1,064,615 + +0.8
1,064,673 - DZA65_RS05170 0.77 +0.8
1,064,834 + +0.2
1,064,839 - -0.6
1,064,867 + +0.4
1,064,868 - -0.7

Or see this region's nucleotide sequence