Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04795 and DZA65_RS04800 are separated by 140 nucleotides DZA65_RS04800 and DZA65_RS04805 are separated by 267 nucleotides
DZA65_RS04795: DZA65_RS04795 - hypothetical protein, at 995,164 to 995,352
_RS04795
DZA65_RS04800: DZA65_RS04800 - integrase arm-type DNA-binding domain-containing protein, at 995,493 to 996,692
_RS04800
DZA65_RS04805: DZA65_RS04805 - ParA family protein, at 996,960 to 997,847
_RS04805
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 994.497 kb on - strand at 994.497 kb on - strand at 994.549 kb on + strand at 994.549 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.666 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.800 kb on + strand at 994.800 kb on + strand at 994.801 kb on - strand at 994.801 kb on - strand at 994.801 kb on - strand at 995.013 kb on - strand at 995.013 kb on - strand at 995.057 kb on - strand at 995.081 kb on + strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.091 kb on - strand at 995.120 kb on + strand at 995.120 kb on + strand at 995.120 kb on + strand at 995.139 kb on + strand at 995.142 kb on + strand at 995.170 kb on - strand at 995.206 kb on + strand, within DZA65_RS04795 at 995.213 kb on + strand, within DZA65_RS04795 at 995.214 kb on - strand, within DZA65_RS04795 at 995.226 kb on - strand, within DZA65_RS04795 at 995.226 kb on - strand, within DZA65_RS04795 at 995.267 kb on + strand, within DZA65_RS04795 at 995.268 kb on - strand, within DZA65_RS04795 at 995.371 kb on - strand at 995.385 kb on + strand at 995.389 kb on - strand at 995.421 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.648 kb on + strand, within DZA65_RS04800 at 995.655 kb on + strand, within DZA65_RS04800 at 995.656 kb on - strand, within DZA65_RS04800 at 995.698 kb on + strand, within DZA65_RS04800 at 995.699 kb on - strand, within DZA65_RS04800 at 995.699 kb on - strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.757 kb on - strand, within DZA65_RS04800 at 995.757 kb on - strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.928 kb on - strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.038 kb on - strand, within DZA65_RS04800 at 996.038 kb on - strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.230 kb on + strand, within DZA65_RS04800 at 996.397 kb on + strand, within DZA65_RS04800 at 996.397 kb on + strand, within DZA65_RS04800 at 996.397 kb on + strand, within DZA65_RS04800 at 996.398 kb on - strand, within DZA65_RS04800 at 996.398 kb on - strand, within DZA65_RS04800 at 996.518 kb on + strand, within DZA65_RS04800 at 996.518 kb on + strand, within DZA65_RS04800 at 996.518 kb on + strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.580 kb on + strand at 996.580 kb on + strand at 996.581 kb on - strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.602 kb on + strand at 996.602 kb on + strand at 996.602 kb on + strand at 996.602 kb on + strand at 996.606 kb on + strand at 996.606 kb on + strand at 996.616 kb on + strand at 996.617 kb on - strand at 996.617 kb on - strand at 996.617 kb on - strand at 996.644 kb on - strand at 996.687 kb on + strand at 996.687 kb on + strand at 996.802 kb on - strand at 996.802 kb on - strand at 996.820 kb on - strand at 996.840 kb on - strand at 996.908 kb on + strand at 996.908 kb on + strand at 996.909 kb on - strand at 996.909 kb on - strand at 996.909 kb on - strand at 996.928 kb on + strand at 996.928 kb on + strand at 996.937 kb on - strand at 996.948 kb on - strand at 996.967 kb on + strand at 996.977 kb on + strand at 996.978 kb on - strand at 997.001 kb on + strand at 997.001 kb on + strand at 997.002 kb on - strand at 997.002 kb on - strand at 997.052 kb on + strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.078 kb on - strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.098 kb on - strand, within DZA65_RS04805 at 997.098 kb on - strand, within DZA65_RS04805 at 997.104 kb on + strand, within DZA65_RS04805 at 997.104 kb on + strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.179 kb on - strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.187 kb on - strand, within DZA65_RS04805 at 997.187 kb on - strand, within DZA65_RS04805 at 997.193 kb on + strand, within DZA65_RS04805 at 997.194 kb on - strand, within DZA65_RS04805 at 997.194 kb on - strand, within DZA65_RS04805 at 997.194 kb on - strand at 997.194 kb on - strand, within DZA65_RS04805 at 997.194 kb on - strand, within DZA65_RS04805 at 997.200 kb on - strand, within DZA65_RS04805 at 997.200 kb on - strand, within DZA65_RS04805 at 997.246 kb on + strand, within DZA65_RS04805 at 997.247 kb on - strand, within DZA65_RS04805 at 997.247 kb on - strand, within DZA65_RS04805 at 997.250 kb on + strand, within DZA65_RS04805 at 997.250 kb on + strand, within DZA65_RS04805 at 997.251 kb on - strand, within DZA65_RS04805 at 997.251 kb on - strand, within DZA65_RS04805 at 997.292 kb on + strand, within DZA65_RS04805 at 997.293 kb on - strand, within DZA65_RS04805 at 997.293 kb on - strand, within DZA65_RS04805 at 997.293 kb on - strand, within DZA65_RS04805 at 997.323 kb on + strand, within DZA65_RS04805 at 997.324 kb on - strand, within DZA65_RS04805 at 997.324 kb on - strand, within DZA65_RS04805 at 997.344 kb on - strand, within DZA65_RS04805 at 997.346 kb on + strand, within DZA65_RS04805 at 997.347 kb on - strand, within DZA65_RS04805 at 997.347 kb on - strand, within DZA65_RS04805 at 997.364 kb on - strand, within DZA65_RS04805 at 997.469 kb on - strand, within DZA65_RS04805 at 997.486 kb on + strand, within DZA65_RS04805 at 997.487 kb on - strand, within DZA65_RS04805 at 997.494 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.515 kb on - strand, within DZA65_RS04805 at 997.649 kb on - strand, within DZA65_RS04805 at 997.649 kb on - strand, within DZA65_RS04805 at 997.649 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 994,497 - -0.2 994,497 - -1.0 994,549 + +0.3 994,549 + +0.5 994,559 + -0.3 994,559 + -0.6 994,559 + +0.3 994,560 - -0.1 994,560 - -0.3 994,560 - +0.1 994,560 - +0.0 994,666 - -0.5 994,766 - +0.8 994,766 - +0.8 994,766 - -0.2 994,800 + +0.3 994,800 + -1.3 994,801 - +0.6 994,801 - -0.5 994,801 - +0.2 995,013 - -0.3 995,013 - -0.2 995,057 - +0.8 995,081 + +0.3 995,082 - -1.9 995,082 - -0.2 995,082 - -1.2 995,082 - -0.4 995,085 + -0.4 995,085 + +3.1 995,085 + +1.4 995,086 - -2.2 995,086 - -0.5 995,086 - -2.6 995,086 - -1.3 995,086 - +0.3 995,091 - -1.2 995,120 + +0.4 995,120 + -0.5 995,120 + -0.6 995,139 + +0.2 995,142 + -0.7 995,170 - -0.3 995,206 + DZA65_RS04795 0.22 +0.1 995,213 + DZA65_RS04795 0.26 +0.3 995,214 - DZA65_RS04795 0.26 -0.7 995,226 - DZA65_RS04795 0.33 -2.2 995,226 - DZA65_RS04795 0.33 +1.5 995,267 + DZA65_RS04795 0.54 -0.6 995,268 - DZA65_RS04795 0.55 -0.7 995,371 - -1.3 995,385 + +1.1 995,389 - -0.5 995,421 - +1.8 995,559 - -2.2 995,559 - -0.9 995,559 - -0.5 995,561 - -1.4 995,561 - -1.0 995,561 - +0.4 995,648 + DZA65_RS04800 0.13 +0.4 995,655 + DZA65_RS04800 0.14 +1.5 995,656 - DZA65_RS04800 0.14 -0.4 995,698 + DZA65_RS04800 0.17 -0.0 995,699 - DZA65_RS04800 0.17 +0.1 995,699 - DZA65_RS04800 0.17 +0.1 995,756 + DZA65_RS04800 0.22 -1.7 995,756 + DZA65_RS04800 0.22 -0.8 995,756 + DZA65_RS04800 0.22 +0.0 995,757 - DZA65_RS04800 0.22 -0.7 995,757 - DZA65_RS04800 0.22 +0.8 995,927 + DZA65_RS04800 0.36 -1.7 995,927 + DZA65_RS04800 0.36 +1.2 995,927 + DZA65_RS04800 0.36 -0.0 995,928 - DZA65_RS04800 0.36 +0.3 995,929 + DZA65_RS04800 0.36 -0.3 995,929 + DZA65_RS04800 0.36 -3.0 995,929 + DZA65_RS04800 0.36 -0.7 995,929 + DZA65_RS04800 0.36 -1.5 995,929 + DZA65_RS04800 0.36 +0.4 995,929 + DZA65_RS04800 0.36 -0.2 995,929 + DZA65_RS04800 0.36 +0.8 995,929 + DZA65_RS04800 0.36 -0.2 995,929 + DZA65_RS04800 0.36 +0.1 995,929 + DZA65_RS04800 0.36 -2.0 995,929 + DZA65_RS04800 0.36 -0.6 995,929 + DZA65_RS04800 0.36 -0.6 995,929 + DZA65_RS04800 0.36 -0.7 995,930 - DZA65_RS04800 0.36 +0.1 995,930 - DZA65_RS04800 0.36 -0.7 995,930 - DZA65_RS04800 0.36 +0.0 995,930 - DZA65_RS04800 0.36 +1.8 995,930 - DZA65_RS04800 0.36 -0.2 996,037 + DZA65_RS04800 0.45 +0.3 996,037 + DZA65_RS04800 0.45 -0.0 996,037 + DZA65_RS04800 0.45 -1.3 996,037 + DZA65_RS04800 0.45 -1.2 996,037 + DZA65_RS04800 0.45 +0.5 996,037 + DZA65_RS04800 0.45 -1.2 996,037 + DZA65_RS04800 0.45 +0.0 996,037 + DZA65_RS04800 0.45 +0.1 996,038 - DZA65_RS04800 0.45 -0.8 996,038 - DZA65_RS04800 0.45 -0.5 996,145 + DZA65_RS04800 0.54 -2.3 996,145 + DZA65_RS04800 0.54 -0.4 996,145 + DZA65_RS04800 0.54 -0.5 996,145 + DZA65_RS04800 0.54 +1.4 996,230 + DZA65_RS04800 0.61 +0.1 996,397 + DZA65_RS04800 0.75 -0.5 996,397 + DZA65_RS04800 0.75 +0.1 996,397 + DZA65_RS04800 0.75 -0.7 996,398 - DZA65_RS04800 0.75 -0.5 996,398 - DZA65_RS04800 0.75 -0.4 996,518 + DZA65_RS04800 0.85 +0.3 996,518 + DZA65_RS04800 0.85 -0.2 996,518 + DZA65_RS04800 0.85 +0.4 996,519 - DZA65_RS04800 0.85 +0.1 996,519 - DZA65_RS04800 0.85 +0.3 996,519 - DZA65_RS04800 0.85 -1.3 996,519 - DZA65_RS04800 0.85 +0.1 996,519 - DZA65_RS04800 0.85 +0.8 996,580 + +1.0 996,580 + +0.0 996,581 - +0.5 996,585 + -1.2 996,585 + +0.0 996,585 + +0.5 996,585 + -0.5 996,585 + +0.1 996,585 + -0.3 996,585 + +1.1 996,586 - -0.2 996,586 - -1.0 996,586 - -0.0 996,586 - +0.6 996,586 - +1.1 996,586 - +0.0 996,586 - -0.4 996,586 - -1.7 996,586 - -0.5 996,586 - -0.0 996,586 - +0.3 996,586 - -0.3 996,586 - -1.0 996,586 - -0.9 996,586 - -0.7 996,586 - -0.4 996,602 + -0.2 996,602 + -0.2 996,602 + -2.3 996,602 + +0.5 996,606 + -0.1 996,606 + +0.9 996,616 + +0.8 996,617 - +0.5 996,617 - +0.2 996,617 - -0.5 996,644 - +1.4 996,687 + -1.2 996,687 + +4.2 996,802 - +0.8 996,802 - +0.8 996,820 - -0.4 996,840 - -0.2 996,908 + +0.3 996,908 + +0.8 996,909 - +0.4 996,909 - -0.3 996,909 - -1.5 996,928 + -1.5 996,928 + -0.7 996,937 - -0.1 996,948 - -1.2 996,967 + -0.4 996,977 + +0.0 996,978 - -0.5 997,001 + -0.4 997,001 + +0.4 997,002 - -0.4 997,002 - +0.2 997,052 + DZA65_RS04805 0.10 +0.3 997,053 - DZA65_RS04805 0.10 +0.1 997,053 - DZA65_RS04805 0.10 -0.3 997,053 - DZA65_RS04805 0.10 -1.3 997,053 - DZA65_RS04805 0.10 -0.3 997,054 + DZA65_RS04805 0.11 -0.3 997,054 + DZA65_RS04805 0.11 -0.3 997,054 + DZA65_RS04805 0.11 -0.3 997,054 + DZA65_RS04805 0.11 -0.5 997,054 + DZA65_RS04805 0.11 +1.3 997,054 + DZA65_RS04805 0.11 -1.3 997,055 - DZA65_RS04805 0.11 -0.2 997,055 - DZA65_RS04805 0.11 +1.2 997,055 - DZA65_RS04805 0.11 -1.4 997,055 - DZA65_RS04805 0.11 +0.8 997,055 - DZA65_RS04805 0.11 -0.2 997,078 - DZA65_RS04805 0.13 +0.3 997,097 + DZA65_RS04805 0.15 -0.2 997,097 + DZA65_RS04805 0.15 -0.4 997,097 + DZA65_RS04805 0.15 +0.3 997,097 + DZA65_RS04805 0.15 +1.8 997,098 - DZA65_RS04805 0.16 +0.4 997,098 - DZA65_RS04805 0.16 +1.3 997,104 + DZA65_RS04805 0.16 -0.7 997,104 + DZA65_RS04805 0.16 +0.3 997,105 - DZA65_RS04805 0.16 -0.6 997,105 - DZA65_RS04805 0.16 +0.1 997,105 - DZA65_RS04805 0.16 -1.5 997,105 - DZA65_RS04805 0.16 -0.2 997,105 - DZA65_RS04805 0.16 +0.3 997,179 - DZA65_RS04805 0.25 -2.5 997,186 + DZA65_RS04805 0.25 +1.7 997,186 + DZA65_RS04805 0.25 +0.2 997,186 + DZA65_RS04805 0.25 -1.5 997,186 + DZA65_RS04805 0.25 -0.7 997,187 - DZA65_RS04805 0.26 +1.5 997,187 - DZA65_RS04805 0.26 +0.8 997,193 + DZA65_RS04805 0.26 -2.0 997,194 - DZA65_RS04805 0.26 -0.3 997,194 - DZA65_RS04805 0.26 +0.3 997,194 - -1.2 997,194 - DZA65_RS04805 0.26 -0.4 997,194 - DZA65_RS04805 0.26 +2.0 997,200 - DZA65_RS04805 0.27 +0.0 997,200 - DZA65_RS04805 0.27 -0.2 997,246 + DZA65_RS04805 0.32 -0.5 997,247 - DZA65_RS04805 0.32 -0.7 997,247 - DZA65_RS04805 0.32 -0.9 997,250 + DZA65_RS04805 0.33 -0.2 997,250 + DZA65_RS04805 0.33 +0.0 997,251 - DZA65_RS04805 0.33 -0.3 997,251 - DZA65_RS04805 0.33 +1.0 997,292 + DZA65_RS04805 0.37 -2.6 997,293 - DZA65_RS04805 0.38 -0.2 997,293 - DZA65_RS04805 0.38 +0.2 997,293 - DZA65_RS04805 0.38 -1.2 997,323 + DZA65_RS04805 0.41 +0.0 997,324 - DZA65_RS04805 0.41 -1.2 997,324 - DZA65_RS04805 0.41 +0.5 997,344 - DZA65_RS04805 0.43 +0.5 997,346 + DZA65_RS04805 0.43 +0.8 997,347 - DZA65_RS04805 0.44 -1.2 997,347 - DZA65_RS04805 0.44 -0.7 997,364 - DZA65_RS04805 0.45 +0.3 997,469 - DZA65_RS04805 0.57 +0.1 997,486 + DZA65_RS04805 0.59 -2.6 997,487 - DZA65_RS04805 0.59 -2.5 997,494 + DZA65_RS04805 0.60 -0.2 997,514 + DZA65_RS04805 0.62 -1.3 997,514 + DZA65_RS04805 0.62 +1.4 997,514 + DZA65_RS04805 0.62 +1.1 997,514 + DZA65_RS04805 0.62 -0.3 997,514 + DZA65_RS04805 0.62 -0.7 997,514 + DZA65_RS04805 0.62 -1.0 997,515 - DZA65_RS04805 0.62 -1.6 997,649 - DZA65_RS04805 0.78 +0.2 997,649 - DZA65_RS04805 0.78 -0.4 997,649 - DZA65_RS04805 0.78 -0.9 997,666 - DZA65_RS04805 0.80 +1.5 997,666 - DZA65_RS04805 0.80 +0.4 997,666 - DZA65_RS04805 0.80 -1.5 997,666 - DZA65_RS04805 0.80 +0.0
Or see this region's nucleotide sequence