Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02605

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02600 and DZA65_RS02605 are separated by 17 nucleotidesDZA65_RS02605 and DZA65_RS02610 are separated by 94 nucleotides DZA65_RS02600: DZA65_RS02600 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 557,695 to 558,729 _RS02600 DZA65_RS02605: DZA65_RS02605 - oxidoreductase, at 558,747 to 559,787 _RS02605 DZA65_RS02610: DZA65_RS02610 - FAD-dependent urate hydroxylase HpxO, at 559,882 to 561,036 _RS02610 Position (kb) 558 559 560Strain fitness (log2 ratio) -2 -1 0 1 2at 557.846 kb on - strand, within DZA65_RS02600at 557.880 kb on + strandat 557.880 kb on + strand, within DZA65_RS02600at 557.880 kb on + strand, within DZA65_RS02600at 557.880 kb on + strand, within DZA65_RS02600at 557.880 kb on + strand, within DZA65_RS02600at 557.881 kb on - strand, within DZA65_RS02600at 557.881 kb on - strand, within DZA65_RS02600at 557.881 kb on - strand, within DZA65_RS02600at 557.881 kb on - strand, within DZA65_RS02600at 558.215 kb on + strand, within DZA65_RS02600at 558.215 kb on + strand, within DZA65_RS02600at 558.215 kb on + strand, within DZA65_RS02600at 558.215 kb on + strand, within DZA65_RS02600at 558.216 kb on - strand, within DZA65_RS02600at 558.216 kb on - strand, within DZA65_RS02600at 558.216 kb on - strand, within DZA65_RS02600at 558.216 kb on - strand, within DZA65_RS02600at 558.243 kb on + strand, within DZA65_RS02600at 558.262 kb on - strand, within DZA65_RS02600at 558.302 kb on - strand, within DZA65_RS02600at 558.319 kb on + strand, within DZA65_RS02600at 558.319 kb on + strand, within DZA65_RS02600at 558.319 kb on + strand, within DZA65_RS02600at 558.319 kb on + strand, within DZA65_RS02600at 558.319 kb on + strand, within DZA65_RS02600at 558.320 kb on - strand, within DZA65_RS02600at 558.510 kb on - strand, within DZA65_RS02600at 558.791 kb on + strandat 558.791 kb on + strandat 558.791 kb on + strandat 558.809 kb on + strandat 558.809 kb on + strandat 558.809 kb on + strandat 558.809 kb on + strandat 558.809 kb on + strandat 558.809 kb on + strandat 558.810 kb on - strandat 558.810 kb on - strandat 558.874 kb on + strand, within DZA65_RS02605at 558.874 kb on + strand, within DZA65_RS02605at 558.874 kb on + strand, within DZA65_RS02605at 558.874 kb on + strand, within DZA65_RS02605at 558.874 kb on + strand, within DZA65_RS02605at 558.875 kb on - strand, within DZA65_RS02605at 558.875 kb on - strand, within DZA65_RS02605at 558.949 kb on + strand, within DZA65_RS02605at 558.949 kb on + strand, within DZA65_RS02605at 558.949 kb on + strand, within DZA65_RS02605at 558.949 kb on + strand, within DZA65_RS02605at 558.949 kb on + strand, within DZA65_RS02605at 558.949 kb on + strand, within DZA65_RS02605at 558.949 kb on + strand, within DZA65_RS02605at 558.950 kb on - strand, within DZA65_RS02605at 558.950 kb on - strand, within DZA65_RS02605at 558.972 kb on + strand, within DZA65_RS02605at 558.973 kb on - strand, within DZA65_RS02605at 559.008 kb on + strand, within DZA65_RS02605at 559.008 kb on + strand, within DZA65_RS02605at 559.008 kb on + strand, within DZA65_RS02605at 559.008 kb on + strand, within DZA65_RS02605at 559.008 kb on + strand, within DZA65_RS02605at 559.009 kb on - strand, within DZA65_RS02605at 559.009 kb on - strand, within DZA65_RS02605at 559.056 kb on + strand, within DZA65_RS02605at 559.056 kb on + strand, within DZA65_RS02605at 559.056 kb on + strand, within DZA65_RS02605at 559.057 kb on - strand, within DZA65_RS02605at 559.057 kb on - strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.060 kb on + strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.061 kb on - strand, within DZA65_RS02605at 559.094 kb on + strand, within DZA65_RS02605at 559.119 kb on - strand, within DZA65_RS02605at 559.140 kb on + strandat 559.141 kb on - strand, within DZA65_RS02605at 559.141 kb on - strand, within DZA65_RS02605at 559.230 kb on + strand, within DZA65_RS02605at 559.230 kb on + strand, within DZA65_RS02605at 559.230 kb on + strand, within DZA65_RS02605at 559.230 kb on + strand, within DZA65_RS02605at 559.231 kb on - strand, within DZA65_RS02605at 559.231 kb on - strand, within DZA65_RS02605at 559.231 kb on - strand, within DZA65_RS02605at 559.231 kb on - strand, within DZA65_RS02605at 559.231 kb on - strand, within DZA65_RS02605at 559.274 kb on + strand, within DZA65_RS02605at 559.275 kb on - strand, within DZA65_RS02605at 559.275 kb on - strand, within DZA65_RS02605at 559.359 kb on + strand, within DZA65_RS02605at 559.359 kb on + strand, within DZA65_RS02605at 559.359 kb on + strand, within DZA65_RS02605at 559.386 kb on + strand, within DZA65_RS02605at 559.386 kb on + strand, within DZA65_RS02605at 559.386 kb on + strand, within DZA65_RS02605at 559.386 kb on + strand, within DZA65_RS02605at 559.386 kb on + strand, within DZA65_RS02605at 559.387 kb on - strand, within DZA65_RS02605at 559.387 kb on - strand, within DZA65_RS02605at 559.387 kb on - strand, within DZA65_RS02605at 559.387 kb on - strand, within DZA65_RS02605at 559.387 kb on - strand, within DZA65_RS02605at 559.527 kb on - strand, within DZA65_RS02605at 559.591 kb on + strand, within DZA65_RS02605at 559.591 kb on + strand, within DZA65_RS02605at 559.592 kb on - strand, within DZA65_RS02605at 559.674 kb on - strand, within DZA65_RS02605at 559.674 kb on - strand, within DZA65_RS02605at 559.785 kb on + strandat 559.785 kb on + strandat 559.786 kb on - strandat 559.786 kb on - strandat 559.786 kb on - strandat 559.799 kb on + strandat 559.799 kb on + strandat 559.800 kb on - strandat 559.800 kb on - strandat 559.855 kb on + strandat 559.867 kb on + strandat 559.867 kb on + strandat 559.868 kb on - strandat 559.898 kb on + strandat 559.898 kb on + strandat 559.898 kb on + strandat 559.898 kb on + strandat 559.899 kb on - strandat 559.899 kb on - strandat 560.098 kb on + strand, within DZA65_RS02610at 560.098 kb on + strand, within DZA65_RS02610at 560.099 kb on - strand, within DZA65_RS02610at 560.099 kb on - strand, within DZA65_RS02610at 560.099 kb on - strand, within DZA65_RS02610at 560.136 kb on + strand, within DZA65_RS02610at 560.198 kb on + strand, within DZA65_RS02610at 560.256 kb on + strand, within DZA65_RS02610at 560.256 kb on + strand, within DZA65_RS02610at 560.256 kb on + strand, within DZA65_RS02610at 560.256 kb on + strand, within DZA65_RS02610at 560.257 kb on - strand, within DZA65_RS02610at 560.257 kb on - strand, within DZA65_RS02610at 560.257 kb on - strand, within DZA65_RS02610at 560.257 kb on - strand, within DZA65_RS02610at 560.292 kb on + strand, within DZA65_RS02610at 560.292 kb on + strand, within DZA65_RS02610at 560.293 kb on - strand, within DZA65_RS02610at 560.298 kb on + strand, within DZA65_RS02610at 560.368 kb on + strand, within DZA65_RS02610at 560.368 kb on + strand, within DZA65_RS02610at 560.369 kb on - strand, within DZA65_RS02610at 560.369 kb on - strand, within DZA65_RS02610at 560.369 kb on - strand, within DZA65_RS02610at 560.408 kb on - strand, within DZA65_RS02610at 560.469 kb on + strand, within DZA65_RS02610at 560.469 kb on + strand, within DZA65_RS02610at 560.470 kb on - strand, within DZA65_RS02610at 560.470 kb on - strand, within DZA65_RS02610at 560.470 kb on - strand, within DZA65_RS02610at 560.527 kb on + strand, within DZA65_RS02610at 560.528 kb on - strand, within DZA65_RS02610at 560.528 kb on - strand, within DZA65_RS02610at 560.602 kb on + strand, within DZA65_RS02610at 560.602 kb on + strand, within DZA65_RS02610at 560.603 kb on - strand, within DZA65_RS02610at 560.639 kb on + strand, within DZA65_RS02610at 560.639 kb on + strand, within DZA65_RS02610at 560.639 kb on + strand, within DZA65_RS02610at 560.751 kb on + strand, within DZA65_RS02610at 560.751 kb on + strand, within DZA65_RS02610at 560.752 kb on - strand, within DZA65_RS02610at 560.752 kb on - strand, within DZA65_RS02610at 560.752 kb on - strand, within DZA65_RS02610at 560.752 kb on - strand, within DZA65_RS02610

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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557,846 - DZA65_RS02600 0.15 -1.3
557,880 + +1.3
557,880 + DZA65_RS02600 0.18 -1.3
557,880 + DZA65_RS02600 0.18 -0.2
557,880 + DZA65_RS02600 0.18 -0.5
557,880 + DZA65_RS02600 0.18 -1.8
557,881 - DZA65_RS02600 0.18 -0.3
557,881 - DZA65_RS02600 0.18 -0.9
557,881 - DZA65_RS02600 0.18 -1.3
557,881 - DZA65_RS02600 0.18 -1.2
558,215 + DZA65_RS02600 0.50 -0.0
558,215 + DZA65_RS02600 0.50 -0.8
558,215 + DZA65_RS02600 0.50 +1.3
558,215 + DZA65_RS02600 0.50 +1.2
558,216 - DZA65_RS02600 0.50 +1.6
558,216 - DZA65_RS02600 0.50 -1.0
558,216 - DZA65_RS02600 0.50 +0.3
558,216 - DZA65_RS02600 0.50 -0.9
558,243 + DZA65_RS02600 0.53 -0.6
558,262 - DZA65_RS02600 0.55 -0.2
558,302 - DZA65_RS02600 0.59 -1.6
558,319 + DZA65_RS02600 0.60 +0.7
558,319 + DZA65_RS02600 0.60 -0.3
558,319 + DZA65_RS02600 0.60 +0.3
558,319 + DZA65_RS02600 0.60 +1.6
558,319 + DZA65_RS02600 0.60 +0.4
558,320 - DZA65_RS02600 0.60 -0.6
558,510 - DZA65_RS02600 0.79 -0.1
558,791 + -0.2
558,791 + +1.0
558,791 + +0.6
558,809 + -1.0
558,809 + -1.2
558,809 + -0.4
558,809 + -0.7
558,809 + -0.7
558,809 + -0.2
558,810 - +1.0
558,810 - +0.6
558,874 + DZA65_RS02605 0.12 +0.4
558,874 + DZA65_RS02605 0.12 -1.2
558,874 + DZA65_RS02605 0.12 -0.4
558,874 + DZA65_RS02605 0.12 -1.3
558,874 + DZA65_RS02605 0.12 -0.0
558,875 - DZA65_RS02605 0.12 -1.3
558,875 - DZA65_RS02605 0.12 +1.3
558,949 + DZA65_RS02605 0.19 -1.6
558,949 + DZA65_RS02605 0.19 -1.5
558,949 + DZA65_RS02605 0.19 -0.2
558,949 + DZA65_RS02605 0.19 -2.7
558,949 + DZA65_RS02605 0.19 -0.6
558,949 + DZA65_RS02605 0.19 -1.3
558,949 + DZA65_RS02605 0.19 -0.5
558,950 - DZA65_RS02605 0.20 -1.3
558,950 - DZA65_RS02605 0.20 -0.2
558,972 + DZA65_RS02605 0.22 -0.4
558,973 - DZA65_RS02605 0.22 +0.5
559,008 + DZA65_RS02605 0.25 -0.3
559,008 + DZA65_RS02605 0.25 -1.0
559,008 + DZA65_RS02605 0.25 -2.2
559,008 + DZA65_RS02605 0.25 +1.0
559,008 + DZA65_RS02605 0.25 -0.4
559,009 - DZA65_RS02605 0.25 -1.0
559,009 - DZA65_RS02605 0.25 -0.5
559,056 + DZA65_RS02605 0.30 -0.1
559,056 + DZA65_RS02605 0.30 -0.1
559,056 + DZA65_RS02605 0.30 -0.6
559,057 - DZA65_RS02605 0.30 +0.4
559,057 - DZA65_RS02605 0.30 +0.2
559,060 + DZA65_RS02605 0.30 -0.4
559,060 + DZA65_RS02605 0.30 +1.0
559,060 + DZA65_RS02605 0.30 +0.8
559,060 + DZA65_RS02605 0.30 +0.7
559,060 + DZA65_RS02605 0.30 -0.0
559,060 + DZA65_RS02605 0.30 -2.3
559,060 + DZA65_RS02605 0.30 -0.3
559,060 + DZA65_RS02605 0.30 +0.1
559,060 + DZA65_RS02605 0.30 +0.6
559,060 + DZA65_RS02605 0.30 -0.8
559,060 + DZA65_RS02605 0.30 -0.2
559,060 + DZA65_RS02605 0.30 -0.4
559,060 + DZA65_RS02605 0.30 -0.8
559,060 + DZA65_RS02605 0.30 +0.3
559,060 + DZA65_RS02605 0.30 -1.4
559,060 + DZA65_RS02605 0.30 -1.5
559,060 + DZA65_RS02605 0.30 +0.2
559,061 - DZA65_RS02605 0.30 +0.6
559,061 - DZA65_RS02605 0.30 +0.7
559,061 - DZA65_RS02605 0.30 +0.4
559,061 - DZA65_RS02605 0.30 -1.7
559,061 - DZA65_RS02605 0.30 +0.7
559,061 - DZA65_RS02605 0.30 +0.4
559,061 - DZA65_RS02605 0.30 -0.9
559,061 - DZA65_RS02605 0.30 -0.0
559,061 - DZA65_RS02605 0.30 +1.6
559,061 - DZA65_RS02605 0.30 +2.6
559,061 - DZA65_RS02605 0.30 +0.5
559,061 - DZA65_RS02605 0.30 +0.0
559,061 - DZA65_RS02605 0.30 -0.8
559,061 - DZA65_RS02605 0.30 +1.3
559,061 - DZA65_RS02605 0.30 -0.5
559,061 - DZA65_RS02605 0.30 -2.2
559,061 - DZA65_RS02605 0.30 -0.3
559,061 - DZA65_RS02605 0.30 -0.2
559,094 + DZA65_RS02605 0.33 -0.0
559,119 - DZA65_RS02605 0.36 -1.0
559,140 + +0.4
559,141 - DZA65_RS02605 0.38 +0.5
559,141 - DZA65_RS02605 0.38 -1.0
559,230 + DZA65_RS02605 0.46 -0.8
559,230 + DZA65_RS02605 0.46 -0.0
559,230 + DZA65_RS02605 0.46 +1.4
559,230 + DZA65_RS02605 0.46 +1.0
559,231 - DZA65_RS02605 0.46 -0.2
559,231 - DZA65_RS02605 0.46 -0.8
559,231 - DZA65_RS02605 0.46 -2.2
559,231 - DZA65_RS02605 0.46 +0.0
559,231 - DZA65_RS02605 0.46 +1.4
559,274 + DZA65_RS02605 0.51 -0.3
559,275 - DZA65_RS02605 0.51 -1.5
559,275 - DZA65_RS02605 0.51 +0.4
559,359 + DZA65_RS02605 0.59 -0.6
559,359 + DZA65_RS02605 0.59 +0.5
559,359 + DZA65_RS02605 0.59 -0.3
559,386 + DZA65_RS02605 0.61 +1.2
559,386 + DZA65_RS02605 0.61 -0.2
559,386 + DZA65_RS02605 0.61 -0.8
559,386 + DZA65_RS02605 0.61 -1.0
559,386 + DZA65_RS02605 0.61 +1.3
559,387 - DZA65_RS02605 0.61 +0.3
559,387 - DZA65_RS02605 0.61 +0.5
559,387 - DZA65_RS02605 0.61 -1.8
559,387 - DZA65_RS02605 0.61 -0.0
559,387 - DZA65_RS02605 0.61 -0.2
559,527 - DZA65_RS02605 0.75 -0.4
559,591 + DZA65_RS02605 0.81 -0.8
559,591 + DZA65_RS02605 0.81 -1.0
559,592 - DZA65_RS02605 0.81 +0.3
559,674 - DZA65_RS02605 0.89 -1.4
559,674 - DZA65_RS02605 0.89 -1.3
559,785 + +0.3
559,785 + -0.8
559,786 - -0.9
559,786 - -0.8
559,786 - -0.2
559,799 + -0.9
559,799 + -2.5
559,800 - -1.0
559,800 - +0.7
559,855 + +1.0
559,867 + -2.2
559,867 + -2.3
559,868 - -0.2
559,898 + +0.2
559,898 + +0.1
559,898 + -0.4
559,898 + +0.7
559,899 - -1.8
559,899 - +2.7
560,098 + DZA65_RS02610 0.19 +0.6
560,098 + DZA65_RS02610 0.19 -0.0
560,099 - DZA65_RS02610 0.19 -0.2
560,099 - DZA65_RS02610 0.19 +1.0
560,099 - DZA65_RS02610 0.19 +0.3
560,136 + DZA65_RS02610 0.22 -1.3
560,198 + DZA65_RS02610 0.27 +0.2
560,256 + DZA65_RS02610 0.32 -0.4
560,256 + DZA65_RS02610 0.32 +0.1
560,256 + DZA65_RS02610 0.32 -0.6
560,256 + DZA65_RS02610 0.32 +0.6
560,257 - DZA65_RS02610 0.32 -0.0
560,257 - DZA65_RS02610 0.32 -0.3
560,257 - DZA65_RS02610 0.32 +1.2
560,257 - DZA65_RS02610 0.32 +1.0
560,292 + DZA65_RS02610 0.35 +0.8
560,292 + DZA65_RS02610 0.35 +1.0
560,293 - DZA65_RS02610 0.36 +0.5
560,298 + DZA65_RS02610 0.36 +1.0
560,368 + DZA65_RS02610 0.42 -1.2
560,368 + DZA65_RS02610 0.42 +0.4
560,369 - DZA65_RS02610 0.42 +0.5
560,369 - DZA65_RS02610 0.42 +0.5
560,369 - DZA65_RS02610 0.42 -0.3
560,408 - DZA65_RS02610 0.46 +1.1
560,469 + DZA65_RS02610 0.51 -0.3
560,469 + DZA65_RS02610 0.51 -0.0
560,470 - DZA65_RS02610 0.51 -0.7
560,470 - DZA65_RS02610 0.51 +0.5
560,470 - DZA65_RS02610 0.51 -1.7
560,527 + DZA65_RS02610 0.56 +0.3
560,528 - DZA65_RS02610 0.56 +1.5
560,528 - DZA65_RS02610 0.56 +1.0
560,602 + DZA65_RS02610 0.62 -0.8
560,602 + DZA65_RS02610 0.62 +0.7
560,603 - DZA65_RS02610 0.62 +0.4
560,639 + DZA65_RS02610 0.66 -1.2
560,639 + DZA65_RS02610 0.66 -0.6
560,639 + DZA65_RS02610 0.66 -1.2
560,751 + DZA65_RS02610 0.75 -1.6
560,751 + DZA65_RS02610 0.75 -1.0
560,752 - DZA65_RS02610 0.75 +1.0
560,752 - DZA65_RS02610 0.75 -0.8
560,752 - DZA65_RS02610 0.75 -1.8
560,752 - DZA65_RS02610 0.75 -0.2

Or see this region's nucleotide sequence