Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02205 and DZA65_RS02210 are separated by 89 nucleotides DZA65_RS02210 and DZA65_RS02215 are separated by 196 nucleotides DZA65_RS02215 and DZA65_RS02220 are separated by 6 nucleotides
DZA65_RS02205: DZA65_RS02205 - hypothetical protein, at 479,293 to 480,096
_RS02205
DZA65_RS02210: DZA65_RS02210 - amino acid transporter, at 480,186 to 480,812
_RS02210
DZA65_RS02215: DZA65_RS02215 - DNA mismatch endonuclease Vsr, at 481,009 to 481,491
_RS02215
DZA65_RS02220: DZA65_RS02220 - DNA cytosine methyltransferase, at 481,498 to 482,928
_RS02220
Position (kb) 480
481 Strain fitness (log2 ratio) -2
-1
0
1
2 at 479.256 kb on + strand at 479.256 kb on + strand at 479.256 kb on + strand at 479.257 kb on - strand at 479.257 kb on - strand at 479.302 kb on + strand at 479.302 kb on + strand at 479.347 kb on - strand at 479.347 kb on - strand at 479.372 kb on + strand at 479.372 kb on + strand at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.440 kb on - strand, within DZA65_RS02205 at 479.612 kb on + strand, within DZA65_RS02205 at 479.612 kb on + strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.630 kb on - strand, within DZA65_RS02205 at 479.630 kb on - strand, within DZA65_RS02205 at 479.776 kb on + strand, within DZA65_RS02205 at 479.777 kb on - strand, within DZA65_RS02205 at 479.777 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205 at 479.831 kb on + strand at 479.831 kb on + strand, within DZA65_RS02205 at 479.831 kb on + strand, within DZA65_RS02205 at 479.831 kb on + strand, within DZA65_RS02205 at 479.832 kb on - strand, within DZA65_RS02205 at 479.832 kb on - strand, within DZA65_RS02205 at 479.832 kb on - strand at 479.832 kb on - strand, within DZA65_RS02205 at 480.045 kb on + strand at 480.045 kb on + strand at 480.046 kb on - strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.053 kb on - strand at 480.063 kb on + strand at 480.076 kb on - strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.094 kb on + strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.095 kb on - strand at 480.181 kb on + strand at 480.187 kb on + strand at 480.188 kb on - strand at 480.188 kb on - strand at 480.188 kb on - strand at 480.210 kb on + strand at 480.211 kb on - strand at 480.225 kb on - strand at 480.225 kb on - strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.235 kb on + strand at 480.236 kb on - strand at 480.236 kb on - strand at 480.287 kb on - strand, within DZA65_RS02210 at 480.310 kb on + strand, within DZA65_RS02210 at 480.322 kb on + strand, within DZA65_RS02210 at 480.322 kb on + strand, within DZA65_RS02210 at 480.322 kb on + strand, within DZA65_RS02210 at 480.323 kb on - strand, within DZA65_RS02210 at 480.323 kb on - strand, within DZA65_RS02210 at 480.323 kb on - strand, within DZA65_RS02210 at 480.323 kb on - strand, within DZA65_RS02210 at 480.361 kb on + strand, within DZA65_RS02210 at 480.361 kb on + strand, within DZA65_RS02210 at 480.362 kb on - strand, within DZA65_RS02210 at 480.362 kb on - strand, within DZA65_RS02210 at 480.362 kb on - strand, within DZA65_RS02210 at 480.362 kb on - strand, within DZA65_RS02210 at 480.362 kb on - strand, within DZA65_RS02210 at 480.427 kb on + strand, within DZA65_RS02210 at 480.428 kb on - strand, within DZA65_RS02210 at 480.428 kb on - strand, within DZA65_RS02210 at 480.428 kb on - strand, within DZA65_RS02210 at 480.556 kb on + strand, within DZA65_RS02210 at 480.556 kb on + strand, within DZA65_RS02210 at 480.556 kb on + strand, within DZA65_RS02210 at 480.557 kb on - strand, within DZA65_RS02210 at 480.563 kb on - strand, within DZA65_RS02210 at 480.675 kb on + strand, within DZA65_RS02210 at 480.675 kb on + strand, within DZA65_RS02210 at 480.676 kb on - strand, within DZA65_RS02210 at 480.782 kb on + strand at 480.800 kb on + strand at 480.800 kb on + strand at 480.801 kb on - strand at 480.804 kb on + strand at 480.976 kb on + strand at 480.977 kb on - strand at 480.977 kb on - strand at 480.979 kb on - strand at 481.011 kb on - strand at 481.046 kb on - strand at 481.046 kb on - strand at 481.051 kb on + strand at 481.156 kb on + strand, within DZA65_RS02215 at 481.181 kb on - strand, within DZA65_RS02215 at 481.236 kb on + strand, within DZA65_RS02215 at 481.363 kb on + strand, within DZA65_RS02215 at 481.527 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 479,256 + -0.9 479,256 + -2.0 479,256 + -0.1 479,257 - -1.5 479,257 - +0.6 479,302 + +0.5 479,302 + -1.8 479,347 - +1.0 479,347 - +0.7 479,372 + -0.1 479,372 + +1.2 479,376 + DZA65_RS02205 0.10 -1.5 479,376 + DZA65_RS02205 0.10 -0.3 479,376 + DZA65_RS02205 0.10 -0.4 479,376 + DZA65_RS02205 0.10 -0.3 479,376 + DZA65_RS02205 0.10 +0.6 479,376 + DZA65_RS02205 0.10 -0.2 479,376 + DZA65_RS02205 0.10 +0.2 479,376 + DZA65_RS02205 0.10 +0.2 479,376 + DZA65_RS02205 0.10 -0.3 479,376 + DZA65_RS02205 0.10 +0.4 479,376 + DZA65_RS02205 0.10 -0.1 479,376 + DZA65_RS02205 0.10 +1.0 479,376 + DZA65_RS02205 0.10 -0.7 479,377 - DZA65_RS02205 0.10 +0.0 479,377 - DZA65_RS02205 0.10 -1.0 479,377 - DZA65_RS02205 0.10 -2.4 479,377 - DZA65_RS02205 0.10 -0.4 479,377 - DZA65_RS02205 0.10 +2.6 479,377 - DZA65_RS02205 0.10 +0.8 479,377 - DZA65_RS02205 0.10 -1.5 479,377 - DZA65_RS02205 0.10 +1.2 479,377 - DZA65_RS02205 0.10 -0.4 479,377 - DZA65_RS02205 0.10 +0.7 479,377 - DZA65_RS02205 0.10 -0.4 479,377 - DZA65_RS02205 0.10 +0.3 479,380 + DZA65_RS02205 0.11 -1.3 479,380 + DZA65_RS02205 0.11 +1.0 479,380 + DZA65_RS02205 0.11 -0.3 479,381 - DZA65_RS02205 0.11 +0.3 479,381 - DZA65_RS02205 0.11 +0.7 479,381 - DZA65_RS02205 0.11 -0.7 479,440 - DZA65_RS02205 0.18 -2.0 479,612 + DZA65_RS02205 0.40 -0.7 479,612 + DZA65_RS02205 0.40 +0.2 479,613 - DZA65_RS02205 0.40 -0.7 479,613 - +0.0 479,613 - DZA65_RS02205 0.40 +0.8 479,613 - DZA65_RS02205 0.40 -1.8 479,613 - DZA65_RS02205 0.40 -0.4 479,613 - DZA65_RS02205 0.40 -1.8 479,629 + DZA65_RS02205 0.42 -1.0 479,629 + DZA65_RS02205 0.42 +0.5 479,629 + DZA65_RS02205 0.42 +0.2 479,629 + DZA65_RS02205 0.42 -0.0 479,629 + DZA65_RS02205 0.42 -1.0 479,629 + DZA65_RS02205 0.42 -0.2 479,630 - DZA65_RS02205 0.42 -0.8 479,630 - DZA65_RS02205 0.42 -1.3 479,776 + DZA65_RS02205 0.60 -0.3 479,777 - DZA65_RS02205 0.60 -0.5 479,777 - DZA65_RS02205 0.60 +1.5 479,787 - DZA65_RS02205 0.61 +2.0 479,787 - DZA65_RS02205 0.61 -1.0 479,787 - DZA65_RS02205 0.61 +0.0 479,831 + -0.5 479,831 + DZA65_RS02205 0.67 +1.3 479,831 + DZA65_RS02205 0.67 -0.5 479,831 + DZA65_RS02205 0.67 +2.6 479,832 - DZA65_RS02205 0.67 +0.0 479,832 - DZA65_RS02205 0.67 -0.2 479,832 - +1.0 479,832 - DZA65_RS02205 0.67 -0.9 480,045 + +0.5 480,045 + +1.0 480,046 - -0.8 480,052 + +1.2 480,052 + +0.3 480,052 + -2.0 480,052 + +0.3 480,052 + -0.8 480,052 + -0.2 480,052 + -1.3 480,052 + +0.5 480,052 + -0.5 480,052 + -2.0 480,052 + +0.2 480,053 - +0.4 480,053 - -0.5 480,053 - -0.2 480,053 - -0.7 480,053 - -0.1 480,053 - -0.7 480,053 - -1.0 480,053 - +1.0 480,053 - +0.0 480,053 - +0.6 480,053 - +0.5 480,053 - +0.0 480,053 - +1.4 480,053 - -1.0 480,053 - -2.0 480,063 + +1.6 480,076 - +1.0 480,094 + -1.5 480,094 + -0.5 480,094 + +0.2 480,094 + -0.3 480,094 + -1.3 480,094 + -1.3 480,094 + -2.1 480,094 + -1.3 480,094 + -0.3 480,095 - -1.5 480,095 - +0.4 480,095 - +1.5 480,095 - -0.3 480,095 - +0.0 480,095 - -0.4 480,095 - +1.0 480,095 - +1.0 480,095 - -0.4 480,095 - +0.5 480,095 - -0.1 480,095 - -2.7 480,095 - +0.6 480,095 - -0.2 480,095 - +1.1 480,181 + -0.1 480,187 + -0.6 480,188 - -0.3 480,188 - -1.3 480,188 - +0.6 480,210 + -0.0 480,211 - -1.0 480,225 - +0.0 480,225 - -1.3 480,235 + -2.1 480,235 + -1.5 480,235 + -0.7 480,235 + +0.7 480,235 + -0.5 480,235 + +0.4 480,235 + -0.3 480,235 + +0.2 480,235 + +0.5 480,236 - -0.4 480,236 - +1.0 480,287 - DZA65_RS02210 0.16 -1.3 480,310 + DZA65_RS02210 0.20 +0.3 480,322 + DZA65_RS02210 0.22 -0.3 480,322 + DZA65_RS02210 0.22 +0.2 480,322 + DZA65_RS02210 0.22 +0.2 480,323 - DZA65_RS02210 0.22 -0.5 480,323 - DZA65_RS02210 0.22 +0.7 480,323 - DZA65_RS02210 0.22 -1.0 480,323 - DZA65_RS02210 0.22 +0.2 480,361 + DZA65_RS02210 0.28 -1.3 480,361 + DZA65_RS02210 0.28 -0.8 480,362 - DZA65_RS02210 0.28 -1.1 480,362 - DZA65_RS02210 0.28 -0.8 480,362 - DZA65_RS02210 0.28 -0.4 480,362 - DZA65_RS02210 0.28 -2.1 480,362 - DZA65_RS02210 0.28 -0.1 480,427 + DZA65_RS02210 0.38 -0.2 480,428 - DZA65_RS02210 0.39 +0.5 480,428 - DZA65_RS02210 0.39 +0.2 480,428 - DZA65_RS02210 0.39 -1.8 480,556 + DZA65_RS02210 0.59 +0.3 480,556 + DZA65_RS02210 0.59 -0.9 480,556 + DZA65_RS02210 0.59 -1.4 480,557 - DZA65_RS02210 0.59 +0.5 480,563 - DZA65_RS02210 0.60 +0.6 480,675 + DZA65_RS02210 0.78 -0.8 480,675 + DZA65_RS02210 0.78 +0.3 480,676 - DZA65_RS02210 0.78 +0.5 480,782 + -1.0 480,800 + +2.4 480,800 + -0.5 480,801 - -1.5 480,804 + +0.6 480,976 + -0.3 480,977 - +0.7 480,977 - +0.6 480,979 - -0.8 481,011 - -0.5 481,046 - -0.7 481,046 - -0.7 481,051 + -0.1 481,156 + DZA65_RS02215 0.30 -2.0 481,181 - DZA65_RS02215 0.36 +0.6 481,236 + DZA65_RS02215 0.47 -0.3 481,363 + DZA65_RS02215 0.73 -0.1 481,527 + +0.2
Or see this region's nucleotide sequence