Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01625

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01615 and DZA65_RS01620 are separated by 4 nucleotidesDZA65_RS01620 and DZA65_RS01625 are separated by 92 nucleotidesDZA65_RS01625 and DZA65_RS01630 are separated by 68 nucleotides DZA65_RS01615: DZA65_RS01615 - stringent starvation protein A, at 348,534 to 349,175 _RS01615 DZA65_RS01620: DZA65_RS01620 - ClpXP protease specificity-enhancing factor, at 349,180 to 349,677 _RS01620 DZA65_RS01625: DZA65_RS01625 - hypothetical protein, at 349,770 to 350,009 _RS01625 DZA65_RS01630: DZA65_RS01630 - FAD-dependent oxidoreductase, at 350,078 to 351,496 _RS01630 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 348.807 kb on + strand, within DZA65_RS01615at 348.864 kb on + strand, within DZA65_RS01615at 348.864 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.976 kb on - strand, within DZA65_RS01615at 349.011 kb on + strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.090 kb on - strand, within DZA65_RS01615at 349.090 kb on - strand, within DZA65_RS01615at 349.213 kb on + strandat 349.214 kb on - strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.231 kb on + strand, within DZA65_RS01620at 349.231 kb on + strand, within DZA65_RS01620at 349.231 kb on + strand, within DZA65_RS01620at 349.231 kb on + strand, within DZA65_RS01620at 349.232 kb on - strand, within DZA65_RS01620at 349.338 kb on - strand, within DZA65_RS01620at 349.338 kb on - strand, within DZA65_RS01620at 349.338 kb on - strand, within DZA65_RS01620at 349.341 kb on + strand, within DZA65_RS01620at 349.341 kb on + strand, within DZA65_RS01620at 349.341 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.459 kb on + strand, within DZA65_RS01620at 349.459 kb on + strand, within DZA65_RS01620at 349.459 kb on + strand, within DZA65_RS01620at 349.460 kb on - strand, within DZA65_RS01620at 349.460 kb on - strand, within DZA65_RS01620at 349.651 kb on - strandat 349.675 kb on + strandat 349.675 kb on + strandat 349.675 kb on + strandat 349.717 kb on - strandat 349.743 kb on + strandat 349.743 kb on + strandat 349.744 kb on - strandat 349.749 kb on - strandat 349.749 kb on - strandat 349.749 kb on - strandat 349.770 kb on - strandat 349.779 kb on + strandat 349.780 kb on - strandat 349.817 kb on + strand, within DZA65_RS01625at 349.818 kb on - strandat 349.840 kb on - strand, within DZA65_RS01625at 349.840 kb on - strand, within DZA65_RS01625at 349.863 kb on + strand, within DZA65_RS01625at 349.920 kb on + strand, within DZA65_RS01625at 349.920 kb on + strand, within DZA65_RS01625at 349.921 kb on - strand, within DZA65_RS01625at 349.921 kb on - strand, within DZA65_RS01625at 349.923 kb on - strand, within DZA65_RS01625at 349.928 kb on + strand, within DZA65_RS01625at 349.928 kb on + strand, within DZA65_RS01625at 349.928 kb on + strand, within DZA65_RS01625at 349.929 kb on - strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.932 kb on - strand, within DZA65_RS01625at 349.932 kb on - strand, within DZA65_RS01625at 349.932 kb on - strand, within DZA65_RS01625at 349.941 kb on + strand, within DZA65_RS01625at 349.941 kb on + strand, within DZA65_RS01625at 349.996 kb on + strandat 349.996 kb on + strandat 349.997 kb on - strandat 349.997 kb on - strandat 349.997 kb on - strandat 349.997 kb on - strandat 349.998 kb on + strandat 349.998 kb on + strandat 349.999 kb on - strandat 350.000 kb on + strandat 350.001 kb on - strandat 350.001 kb on - strandat 350.001 kb on - strandat 350.007 kb on + strandat 350.008 kb on - strandat 350.011 kb on - strandat 350.037 kb on - strandat 350.064 kb on + strandat 350.065 kb on - strandat 350.079 kb on + strandat 350.079 kb on + strandat 350.080 kb on - strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.116 kb on + strandat 350.411 kb on + strand, within DZA65_RS01630at 350.412 kb on - strand, within DZA65_RS01630at 350.412 kb on - strand, within DZA65_RS01630at 350.426 kb on - strand, within DZA65_RS01630at 350.555 kb on + strand, within DZA65_RS01630at 350.555 kb on + strand, within DZA65_RS01630at 350.555 kb on + strand, within DZA65_RS01630at 350.555 kb on + strand, within DZA65_RS01630at 350.556 kb on - strand, within DZA65_RS01630at 350.556 kb on - strand, within DZA65_RS01630at 350.584 kb on + strand, within DZA65_RS01630at 350.584 kb on + strand, within DZA65_RS01630at 350.585 kb on - strand, within DZA65_RS01630at 350.652 kb on + strand, within DZA65_RS01630at 350.652 kb on + strand, within DZA65_RS01630at 350.652 kb on + strand, within DZA65_RS01630at 350.652 kb on + strand, within DZA65_RS01630at 350.653 kb on - strand, within DZA65_RS01630at 350.653 kb on - strand, within DZA65_RS01630at 350.653 kb on - strand, within DZA65_RS01630at 350.653 kb on - strand, within DZA65_RS01630at 350.653 kb on - strand, within DZA65_RS01630at 350.653 kb on - strand, within DZA65_RS01630at 350.653 kb on - strand, within DZA65_RS01630at 350.724 kb on + strand, within DZA65_RS01630at 350.724 kb on + strand, within DZA65_RS01630at 350.724 kb on + strand, within DZA65_RS01630at 350.724 kb on + strand, within DZA65_RS01630at 350.724 kb on + strand, within DZA65_RS01630at 350.724 kb on + strand, within DZA65_RS01630at 350.773 kb on - strand, within DZA65_RS01630at 350.773 kb on - strand, within DZA65_RS01630at 350.773 kb on - strand, within DZA65_RS01630at 350.773 kb on - strand, within DZA65_RS01630at 350.773 kb on - strand, within DZA65_RS01630at 350.773 kb on - strand, within DZA65_RS01630at 350.773 kb on - strand, within DZA65_RS01630at 350.802 kb on + strand, within DZA65_RS01630at 350.802 kb on + strand, within DZA65_RS01630at 350.803 kb on - strand, within DZA65_RS01630at 350.803 kb on - strand, within DZA65_RS01630at 350.851 kb on + strand, within DZA65_RS01630at 350.852 kb on - strand, within DZA65_RS01630at 350.973 kb on + strand, within DZA65_RS01630at 350.973 kb on + strand, within DZA65_RS01630at 350.974 kb on - strand, within DZA65_RS01630at 350.987 kb on + strand, within DZA65_RS01630

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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348,807 + DZA65_RS01615 0.43 -1.6
348,864 + DZA65_RS01615 0.51 -0.6
348,864 + DZA65_RS01615 0.51 -0.7
348,975 + DZA65_RS01615 0.69 -1.3
348,975 + DZA65_RS01615 0.69 -1.5
348,975 + DZA65_RS01615 0.69 +0.2
348,976 - DZA65_RS01615 0.69 -0.2
349,011 + DZA65_RS01615 0.74 +0.2
349,012 - DZA65_RS01615 0.74 -1.1
349,012 - DZA65_RS01615 0.74 +0.0
349,012 - DZA65_RS01615 0.74 -2.2
349,089 + DZA65_RS01615 0.86 +1.1
349,089 + DZA65_RS01615 0.86 -1.2
349,089 + DZA65_RS01615 0.86 +0.8
349,089 + DZA65_RS01615 0.86 -0.0
349,090 - DZA65_RS01615 0.87 +0.1
349,090 - DZA65_RS01615 0.87 -0.9
349,213 + -1.5
349,214 - -0.5
349,217 + +0.5
349,217 + -0.6
349,217 + +1.3
349,217 + -1.7
349,218 - -1.4
349,218 - -0.3
349,218 - -1.6
349,218 - +0.6
349,218 - -0.5
349,218 - +0.1
349,218 - -1.9
349,231 + DZA65_RS01620 0.10 +0.2
349,231 + DZA65_RS01620 0.10 -1.9
349,231 + DZA65_RS01620 0.10 -0.3
349,231 + DZA65_RS01620 0.10 -0.1
349,232 - DZA65_RS01620 0.10 -0.1
349,338 - DZA65_RS01620 0.32 -0.2
349,338 - DZA65_RS01620 0.32 -0.8
349,338 - DZA65_RS01620 0.32 -1.5
349,341 + DZA65_RS01620 0.32 -0.5
349,341 + DZA65_RS01620 0.32 +0.4
349,341 + DZA65_RS01620 0.32 +0.1
349,388 + DZA65_RS01620 0.42 -1.2
349,388 + DZA65_RS01620 0.42 -0.1
349,388 + DZA65_RS01620 0.42 -0.7
349,388 + DZA65_RS01620 0.42 -0.5
349,389 - DZA65_RS01620 0.42 -0.1
349,389 - DZA65_RS01620 0.42 +0.7
349,389 - DZA65_RS01620 0.42 -0.9
349,389 - DZA65_RS01620 0.42 -1.7
349,459 + DZA65_RS01620 0.56 -0.4
349,459 + DZA65_RS01620 0.56 +0.6
349,459 + DZA65_RS01620 0.56 -0.3
349,460 - DZA65_RS01620 0.56 +1.5
349,460 - DZA65_RS01620 0.56 -1.2
349,651 - -2.6
349,675 + -0.0
349,675 + -1.2
349,675 + +0.1
349,717 - +0.1
349,743 + +0.9
349,743 + +0.3
349,744 - -1.9
349,749 - -0.6
349,749 - -0.1
349,749 - -0.4
349,770 - -0.9
349,779 + +0.3
349,780 - +0.3
349,817 + DZA65_RS01625 0.20 +0.3
349,818 - +0.1
349,840 - DZA65_RS01625 0.29 -0.2
349,840 - DZA65_RS01625 0.29 +0.4
349,863 + DZA65_RS01625 0.39 -1.5
349,920 + DZA65_RS01625 0.62 -2.2
349,920 + DZA65_RS01625 0.62 +0.2
349,921 - DZA65_RS01625 0.63 -0.2
349,921 - DZA65_RS01625 0.63 +0.4
349,923 - DZA65_RS01625 0.64 -0.9
349,928 + DZA65_RS01625 0.66 +0.4
349,928 + DZA65_RS01625 0.66 +1.1
349,928 + DZA65_RS01625 0.66 -0.3
349,929 - DZA65_RS01625 0.66 -0.2
349,931 + DZA65_RS01625 0.67 -1.7
349,931 + DZA65_RS01625 0.67 +0.7
349,931 + DZA65_RS01625 0.67 -1.2
349,931 + DZA65_RS01625 0.67 -0.5
349,932 - DZA65_RS01625 0.68 +0.5
349,932 - DZA65_RS01625 0.68 -0.8
349,932 - DZA65_RS01625 0.68 -1.7
349,941 + DZA65_RS01625 0.71 -0.3
349,941 + DZA65_RS01625 0.71 -1.0
349,996 + +2.4
349,996 + +0.3
349,997 - -0.2
349,997 - +0.1
349,997 - +0.4
349,997 - -0.2
349,998 + -0.5
349,998 + -0.2
349,999 - +0.1
350,000 + -1.5
350,001 - +2.5
350,001 - -0.6
350,001 - +0.4
350,007 + -0.3
350,008 - +0.1
350,011 - +1.1
350,037 - +0.1
350,064 + -0.1
350,065 - -0.6
350,079 + -0.9
350,079 + -0.5
350,080 - +0.4
350,091 + +1.1
350,091 + -0.2
350,091 + -2.1
350,091 + +2.4
350,091 + +0.9
350,092 - +0.2
350,092 - +0.7
350,092 - +1.1
350,092 - +1.0
350,092 - -0.5
350,116 + +0.3
350,411 + DZA65_RS01630 0.23 +0.6
350,412 - DZA65_RS01630 0.24 -0.4
350,412 - DZA65_RS01630 0.24 +0.5
350,426 - DZA65_RS01630 0.25 +0.2
350,555 + DZA65_RS01630 0.34 -2.5
350,555 + DZA65_RS01630 0.34 -0.1
350,555 + DZA65_RS01630 0.34 +0.6
350,555 + DZA65_RS01630 0.34 -0.7
350,556 - DZA65_RS01630 0.34 -0.9
350,556 - DZA65_RS01630 0.34 +0.7
350,584 + DZA65_RS01630 0.36 -1.2
350,584 + DZA65_RS01630 0.36 -1.0
350,585 - DZA65_RS01630 0.36 -0.3
350,652 + DZA65_RS01630 0.40 +0.1
350,652 + DZA65_RS01630 0.40 -0.4
350,652 + DZA65_RS01630 0.40 -0.6
350,652 + DZA65_RS01630 0.40 -1.2
350,653 - DZA65_RS01630 0.41 +0.7
350,653 - DZA65_RS01630 0.41 -1.2
350,653 - DZA65_RS01630 0.41 +0.4
350,653 - DZA65_RS01630 0.41 +1.9
350,653 - DZA65_RS01630 0.41 +0.4
350,653 - DZA65_RS01630 0.41 -1.3
350,653 - DZA65_RS01630 0.41 -0.2
350,724 + DZA65_RS01630 0.46 -0.7
350,724 + DZA65_RS01630 0.46 -1.2
350,724 + DZA65_RS01630 0.46 -0.3
350,724 + DZA65_RS01630 0.46 -0.2
350,724 + DZA65_RS01630 0.46 -0.1
350,724 + DZA65_RS01630 0.46 +2.4
350,773 - DZA65_RS01630 0.49 +1.1
350,773 - DZA65_RS01630 0.49 +1.4
350,773 - DZA65_RS01630 0.49 -2.5
350,773 - DZA65_RS01630 0.49 +1.6
350,773 - DZA65_RS01630 0.49 +0.3
350,773 - DZA65_RS01630 0.49 -0.4
350,773 - DZA65_RS01630 0.49 +0.9
350,802 + DZA65_RS01630 0.51 +0.1
350,802 + DZA65_RS01630 0.51 +0.2
350,803 - DZA65_RS01630 0.51 -0.1
350,803 - DZA65_RS01630 0.51 +0.4
350,851 + DZA65_RS01630 0.54 -0.2
350,852 - DZA65_RS01630 0.55 -1.3
350,973 + DZA65_RS01630 0.63 +2.7
350,973 + DZA65_RS01630 0.63 +0.4
350,974 - DZA65_RS01630 0.63 -0.2
350,987 + DZA65_RS01630 0.64 +0.3

Or see this region's nucleotide sequence