Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01405 and DZA65_RS01410 are separated by 314 nucleotides DZA65_RS01410 and DZA65_RS01415 are separated by 103 nucleotides
DZA65_RS01405: DZA65_RS01405 - RNase E specificity factor CsrD, at 308,301 to 310,247
_RS01405
DZA65_RS01410: DZA65_RS01410 - rod shape-determining protein MreB, at 310,562 to 311,605
_RS01410
DZA65_RS01415: DZA65_RS01415 - rod shape-determining protein MreC, at 311,709 to 312,827
_RS01415
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.612 kb on + strand, within DZA65_RS01405 at 309.612 kb on + strand, within DZA65_RS01405 at 309.612 kb on + strand, within DZA65_RS01405 at 309.612 kb on + strand, within DZA65_RS01405 at 309.612 kb on + strand, within DZA65_RS01405 at 309.613 kb on - strand, within DZA65_RS01405 at 309.645 kb on + strand, within DZA65_RS01405 at 309.645 kb on + strand, within DZA65_RS01405 at 309.645 kb on + strand, within DZA65_RS01405 at 309.645 kb on + strand, within DZA65_RS01405 at 309.645 kb on + strand, within DZA65_RS01405 at 309.645 kb on + strand, within DZA65_RS01405 at 309.645 kb on + strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.646 kb on - strand, within DZA65_RS01405 at 309.758 kb on + strand, within DZA65_RS01405 at 309.759 kb on - strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.879 kb on + strand, within DZA65_RS01405 at 309.880 kb on - strand, within DZA65_RS01405 at 309.880 kb on - strand, within DZA65_RS01405 at 309.880 kb on - strand, within DZA65_RS01405 at 309.880 kb on - strand, within DZA65_RS01405 at 309.880 kb on - strand, within DZA65_RS01405 at 309.880 kb on - strand, within DZA65_RS01405 at 309.880 kb on - strand, within DZA65_RS01405 at 309.881 kb on + strand, within DZA65_RS01405 at 309.881 kb on + strand, within DZA65_RS01405 at 309.881 kb on + strand, within DZA65_RS01405 at 309.881 kb on + strand, within DZA65_RS01405 at 309.901 kb on + strand, within DZA65_RS01405 at 309.901 kb on + strand, within DZA65_RS01405 at 309.902 kb on - strand, within DZA65_RS01405 at 309.902 kb on - strand, within DZA65_RS01405 at 309.902 kb on - strand, within DZA65_RS01405 at 309.902 kb on - strand, within DZA65_RS01405 at 309.975 kb on + strand, within DZA65_RS01405 at 309.975 kb on + strand, within DZA65_RS01405 at 309.975 kb on + strand, within DZA65_RS01405 at 309.975 kb on + strand, within DZA65_RS01405 at 309.975 kb on + strand, within DZA65_RS01405 at 309.976 kb on - strand, within DZA65_RS01405 at 309.976 kb on - strand, within DZA65_RS01405 at 309.976 kb on - strand, within DZA65_RS01405 at 309.978 kb on - strand, within DZA65_RS01405 at 310.037 kb on + strand, within DZA65_RS01405 at 310.120 kb on + strand at 310.120 kb on + strand at 310.120 kb on + strand at 310.120 kb on + strand at 310.120 kb on + strand at 310.121 kb on - strand at 310.121 kb on - strand at 310.121 kb on - strand at 310.124 kb on + strand at 310.124 kb on + strand at 310.124 kb on + strand at 310.125 kb on - strand at 310.125 kb on - strand at 310.125 kb on - strand at 310.125 kb on - strand at 310.154 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.239 kb on + strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.240 kb on - strand at 310.268 kb on - strand at 310.268 kb on - strand at 310.268 kb on - strand at 310.272 kb on + strand at 310.272 kb on + strand at 310.272 kb on + strand at 310.273 kb on - strand at 310.273 kb on - strand at 310.273 kb on - strand at 310.293 kb on + strand at 310.343 kb on + strand at 310.344 kb on - strand at 310.429 kb on + strand at 310.430 kb on - strand at 310.467 kb on - strand at 310.467 kb on - strand at 310.509 kb on + strand at 311.603 kb on + strand at 311.603 kb on + strand at 311.604 kb on - strand at 311.604 kb on - strand at 311.656 kb on + strand at 311.656 kb on + strand at 311.656 kb on + strand at 311.656 kb on + strand at 311.656 kb on + strand at 311.656 kb on + strand at 311.657 kb on - strand at 311.657 kb on - strand at 311.657 kb on - strand at 311.673 kb on - strand at 311.685 kb on + strand at 311.698 kb on + strand at 311.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 309,612 + DZA65_RS01405 0.67 -0.9 309,612 + DZA65_RS01405 0.67 -0.7 309,612 + DZA65_RS01405 0.67 +0.2 309,612 + DZA65_RS01405 0.67 -0.7 309,612 + DZA65_RS01405 0.67 +1.1 309,613 - DZA65_RS01405 0.67 +0.4 309,645 + DZA65_RS01405 0.69 -0.6 309,645 + DZA65_RS01405 0.69 -2.2 309,645 + DZA65_RS01405 0.69 -0.6 309,645 + DZA65_RS01405 0.69 -1.6 309,645 + DZA65_RS01405 0.69 +0.1 309,645 + DZA65_RS01405 0.69 -1.0 309,645 + DZA65_RS01405 0.69 -0.3 309,646 - DZA65_RS01405 0.69 +1.1 309,646 - DZA65_RS01405 0.69 +1.1 309,646 - DZA65_RS01405 0.69 -2.6 309,646 - DZA65_RS01405 0.69 -0.5 309,646 - DZA65_RS01405 0.69 -2.4 309,646 - DZA65_RS01405 0.69 -1.2 309,646 - DZA65_RS01405 0.69 -1.4 309,646 - DZA65_RS01405 0.69 +0.2 309,646 - DZA65_RS01405 0.69 -0.4 309,646 - DZA65_RS01405 0.69 -0.5 309,758 + DZA65_RS01405 0.75 -0.6 309,759 - DZA65_RS01405 0.75 -0.3 309,879 + DZA65_RS01405 0.81 -0.9 309,879 + DZA65_RS01405 0.81 -1.3 309,879 + DZA65_RS01405 0.81 -0.3 309,879 + DZA65_RS01405 0.81 -2.6 309,879 + DZA65_RS01405 0.81 -2.4 309,879 + DZA65_RS01405 0.81 -1.2 309,879 + DZA65_RS01405 0.81 +0.4 309,879 + DZA65_RS01405 0.81 -2.4 309,879 + DZA65_RS01405 0.81 -0.7 309,879 + DZA65_RS01405 0.81 -0.8 309,879 + DZA65_RS01405 0.81 +0.7 309,879 + DZA65_RS01405 0.81 -1.1 309,879 + DZA65_RS01405 0.81 -1.2 309,879 + DZA65_RS01405 0.81 +1.1 309,879 + DZA65_RS01405 0.81 -0.9 309,879 + DZA65_RS01405 0.81 -1.5 309,880 - DZA65_RS01405 0.81 +2.1 309,880 - DZA65_RS01405 0.81 +1.2 309,880 - DZA65_RS01405 0.81 -1.7 309,880 - DZA65_RS01405 0.81 -3.2 309,880 - DZA65_RS01405 0.81 +0.4 309,880 - DZA65_RS01405 0.81 -0.1 309,880 - DZA65_RS01405 0.81 -1.1 309,881 + DZA65_RS01405 0.81 -0.1 309,881 + DZA65_RS01405 0.81 -0.5 309,881 + DZA65_RS01405 0.81 -0.8 309,881 + DZA65_RS01405 0.81 +0.3 309,901 + DZA65_RS01405 0.82 -1.3 309,901 + DZA65_RS01405 0.82 -0.9 309,902 - DZA65_RS01405 0.82 -1.1 309,902 - DZA65_RS01405 0.82 +0.1 309,902 - DZA65_RS01405 0.82 +0.3 309,902 - DZA65_RS01405 0.82 -0.9 309,975 + DZA65_RS01405 0.86 +0.5 309,975 + DZA65_RS01405 0.86 -1.5 309,975 + DZA65_RS01405 0.86 -1.8 309,975 + DZA65_RS01405 0.86 -1.7 309,975 + DZA65_RS01405 0.86 -2.3 309,976 - DZA65_RS01405 0.86 +0.3 309,976 - DZA65_RS01405 0.86 +0.3 309,976 - DZA65_RS01405 0.86 -0.8 309,978 - DZA65_RS01405 0.86 -0.5 310,037 + DZA65_RS01405 0.89 -0.2 310,120 + -0.3 310,120 + -0.5 310,120 + -1.3 310,120 + -2.6 310,120 + -0.9 310,121 - +1.4 310,121 - -0.6 310,121 - -0.5 310,124 + -2.6 310,124 + +1.4 310,124 + -0.9 310,125 - -3.4 310,125 - -0.6 310,125 - +0.1 310,125 - -1.0 310,154 + -2.2 310,239 + -0.8 310,239 + +0.8 310,239 + +0.8 310,239 + +0.8 310,239 + -0.4 310,239 + -0.6 310,239 + -0.8 310,239 + +0.2 310,239 + -0.9 310,239 + -0.0 310,239 + -1.1 310,239 + +0.3 310,240 - +1.1 310,240 - +0.0 310,240 - -0.5 310,240 - +0.1 310,240 - +0.5 310,240 - -0.7 310,240 - -0.9 310,240 - +0.1 310,240 - -0.0 310,268 - -1.3 310,268 - -1.1 310,268 - +1.1 310,272 + +0.1 310,272 + -1.2 310,272 + -0.5 310,273 - -1.2 310,273 - -0.1 310,273 - +0.8 310,293 + -0.9 310,343 + -0.4 310,344 - +1.5 310,429 + +0.4 310,430 - -1.0 310,467 - -0.5 310,467 - +1.6 310,509 + -0.9 311,603 + +0.2 311,603 + -0.1 311,604 - +0.5 311,604 - -3.6 311,656 + -1.1 311,656 + -0.4 311,656 + +0.4 311,656 + +1.1 311,656 + -0.5 311,656 + +1.1 311,657 - -0.6 311,657 - +0.3 311,657 - -0.3 311,673 - +1.5 311,685 + +0.1 311,698 + -2.4 311,708 + +0.7
Or see this region's nucleotide sequence