Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00170

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00165 and DZA65_RS00170 overlap by 4 nucleotidesDZA65_RS00170 and DZA65_RS00175 are separated by 1 nucleotidesDZA65_RS00175 and DZA65_RS00180 are separated by 28 nucleotides DZA65_RS00165: DZA65_RS00165 - ABC transporter ATP-binding protein, at 36,905 to 38,557 _RS00165 DZA65_RS00170: DZA65_RS00170 - ABC transporter permease, at 38,554 to 39,444 _RS00170 DZA65_RS00175: DZA65_RS00175 - ABC transporter permease, at 39,446 to 40,387 _RS00175 DZA65_RS00180: DZA65_RS00180 - TIGR04028 family ABC transporter substrate-binding protein, at 40,416 to 42,059 _RS00180 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 37.590 kb on - strand, within DZA65_RS00165at 37.756 kb on + strand, within DZA65_RS00165at 37.776 kb on + strand, within DZA65_RS00165at 37.776 kb on + strand, within DZA65_RS00165at 37.828 kb on + strand, within DZA65_RS00165at 37.828 kb on + strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.937 kb on + strand, within DZA65_RS00165at 37.938 kb on - strand, within DZA65_RS00165at 37.938 kb on - strand, within DZA65_RS00165at 38.074 kb on - strand, within DZA65_RS00165at 38.266 kb on + strand, within DZA65_RS00165at 38.266 kb on + strand, within DZA65_RS00165at 38.267 kb on - strand, within DZA65_RS00165at 38.267 kb on - strand, within DZA65_RS00165at 38.267 kb on - strand, within DZA65_RS00165at 38.405 kb on + strandat 38.484 kb on + strandat 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.830 kb on - strand, within DZA65_RS00170at 38.868 kb on - strand, within DZA65_RS00170at 38.868 kb on - strand, within DZA65_RS00170at 39.040 kb on + strand, within DZA65_RS00170at 39.040 kb on + strandat 39.041 kb on - strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.206 kb on + strand, within DZA65_RS00170at 39.206 kb on + strand, within DZA65_RS00170at 39.207 kb on - strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.298 kb on - strand, within DZA65_RS00170at 39.444 kb on + strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.489 kb on + strandat 39.557 kb on + strand, within DZA65_RS00175at 39.557 kb on + strand, within DZA65_RS00175at 39.558 kb on - strand, within DZA65_RS00175at 39.722 kb on + strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 40.091 kb on + strand, within DZA65_RS00175at 40.232 kb on + strand, within DZA65_RS00175at 40.324 kb on + strandat 40.324 kb on + strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.380 kb on - strandat 40.417 kb on + strandat 40.417 kb on + strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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37,590 - DZA65_RS00165 0.41 -0.5
37,756 + DZA65_RS00165 0.51 +0.1
37,776 + DZA65_RS00165 0.53 +0.3
37,776 + DZA65_RS00165 0.53 +0.1
37,828 + DZA65_RS00165 0.56 -0.3
37,828 + DZA65_RS00165 0.56 -0.3
37,829 - DZA65_RS00165 0.56 -1.3
37,829 - DZA65_RS00165 0.56 +0.1
37,829 - DZA65_RS00165 0.56 +0.3
37,829 - DZA65_RS00165 0.56 +1.6
37,829 - DZA65_RS00165 0.56 +1.1
37,829 - DZA65_RS00165 0.56 +0.3
37,829 - DZA65_RS00165 0.56 +0.9
37,829 - DZA65_RS00165 0.56 -1.2
37,829 - DZA65_RS00165 0.56 -0.2
37,829 - DZA65_RS00165 0.56 +0.3
37,829 - DZA65_RS00165 0.56 -1.2
37,830 + DZA65_RS00165 0.56 +2.1
37,830 + DZA65_RS00165 0.56 -0.3
37,830 + DZA65_RS00165 0.56 -0.3
37,830 + DZA65_RS00165 0.56 -0.7
37,830 + DZA65_RS00165 0.56 -0.0
37,830 + DZA65_RS00165 0.56 +2.1
37,830 + DZA65_RS00165 0.56 -0.5
37,830 + DZA65_RS00165 0.56 +2.1
37,830 + DZA65_RS00165 0.56 +0.6
37,830 + DZA65_RS00165 0.56 -0.3
37,830 + DZA65_RS00165 0.56 +0.2
37,831 - DZA65_RS00165 0.56 +0.9
37,831 - DZA65_RS00165 0.56 -0.0
37,831 - DZA65_RS00165 0.56 +0.3
37,831 - DZA65_RS00165 0.56 +0.7
37,831 - DZA65_RS00165 0.56 -1.9
37,937 + DZA65_RS00165 0.62 +0.4
37,938 - DZA65_RS00165 0.62 +0.3
37,938 - DZA65_RS00165 0.62 -1.9
38,074 - DZA65_RS00165 0.71 -1.0
38,266 + DZA65_RS00165 0.82 -0.9
38,266 + DZA65_RS00165 0.82 +0.1
38,267 - DZA65_RS00165 0.82 +0.5
38,267 - DZA65_RS00165 0.82 -0.9
38,267 - DZA65_RS00165 0.82 +0.8
38,405 + +3.1
38,484 + +0.1
38,660 + DZA65_RS00170 0.12 -2.8
38,660 + DZA65_RS00170 0.12 +0.1
38,660 + DZA65_RS00170 0.12 -1.6
38,660 + DZA65_RS00170 0.12 -0.9
38,660 + DZA65_RS00170 0.12 +0.9
38,660 + DZA65_RS00170 0.12 -2.6
38,661 - DZA65_RS00170 0.12 +0.4
38,661 - DZA65_RS00170 0.12 +1.5
38,661 - DZA65_RS00170 0.12 -0.2
38,830 - DZA65_RS00170 0.31 +0.1
38,868 - DZA65_RS00170 0.35 -0.7
38,868 - DZA65_RS00170 0.35 -1.5
39,040 + DZA65_RS00170 0.55 -0.1
39,040 + +0.5
39,041 - DZA65_RS00170 0.55 -0.2
39,170 + DZA65_RS00170 0.69 -0.5
39,170 + DZA65_RS00170 0.69 +1.1
39,170 + DZA65_RS00170 0.69 +0.7
39,170 + DZA65_RS00170 0.69 -2.1
39,171 - DZA65_RS00170 0.69 -0.7
39,171 - DZA65_RS00170 0.69 -0.7
39,171 - DZA65_RS00170 0.69 +0.0
39,171 - DZA65_RS00170 0.69 -0.9
39,206 + DZA65_RS00170 0.73 +3.5
39,206 + DZA65_RS00170 0.73 -0.9
39,207 - DZA65_RS00170 0.73 -0.1
39,221 + DZA65_RS00170 0.75 -0.3
39,221 + DZA65_RS00170 0.75 -2.5
39,221 + DZA65_RS00170 0.75 +0.4
39,221 + DZA65_RS00170 0.75 -2.2
39,221 + DZA65_RS00170 0.75 +1.1
39,221 + DZA65_RS00170 0.75 -1.6
39,221 + DZA65_RS00170 0.75 +0.1
39,221 + DZA65_RS00170 0.75 -0.7
39,222 - DZA65_RS00170 0.75 -1.6
39,222 - DZA65_RS00170 0.75 +0.6
39,222 - DZA65_RS00170 0.75 -1.2
39,222 - DZA65_RS00170 0.75 -0.7
39,222 - DZA65_RS00170 0.75 +0.5
39,222 - DZA65_RS00170 0.75 +0.5
39,236 + DZA65_RS00170 0.77 -0.3
39,236 + DZA65_RS00170 0.77 -0.8
39,236 + DZA65_RS00170 0.77 +0.1
39,236 + DZA65_RS00170 0.77 -1.0
39,236 + DZA65_RS00170 0.77 -0.5
39,236 + DZA65_RS00170 0.77 +0.2
39,237 - DZA65_RS00170 0.77 +0.4
39,237 - DZA65_RS00170 0.77 +0.5
39,237 - DZA65_RS00170 0.77 +0.1
39,298 - DZA65_RS00170 0.84 -1.7
39,444 + -0.1
39,445 - +0.3
39,445 - -0.8
39,445 - -1.0
39,489 + +0.1
39,557 + DZA65_RS00175 0.12 -0.0
39,557 + DZA65_RS00175 0.12 -0.5
39,558 - DZA65_RS00175 0.12 -0.8
39,722 + DZA65_RS00175 0.29 -1.7
39,723 - DZA65_RS00175 0.29 -1.3
39,723 - DZA65_RS00175 0.29 +0.9
39,723 - DZA65_RS00175 0.29 -0.2
40,091 + DZA65_RS00175 0.68 +1.1
40,232 + DZA65_RS00175 0.83 +0.0
40,324 + +0.5
40,324 + -0.7
40,325 - +0.1
40,325 - +0.9
40,325 - +0.9
40,325 - +0.1
40,325 - +1.5
40,325 - +0.5
40,374 + +0.1
40,374 + +0.0
40,374 + +0.7
40,374 + +0.9
40,374 + +0.9
40,374 + -0.2
40,375 - +0.3
40,375 - -0.9
40,375 - -1.9
40,375 - -1.5
40,380 - +1.7
40,417 + +0.4
40,417 + -0.9
40,418 - +0.6
40,418 - +1.1
40,418 - -1.0
40,418 - -0.9
40,418 - -0.5
40,438 + -1.0
40,438 + -0.5
40,438 + -0.9
40,438 + -1.5
40,438 + -0.4
40,439 - -2.2
40,439 - -0.5
40,439 - -0.9
40,439 - -0.9

Or see this region's nucleotide sequence