Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22475 and DZA65_RS22480 overlap by 4 nucleotides DZA65_RS22480 and DZA65_RS22485 are separated by 26 nucleotides DZA65_RS22485 and DZA65_RS22490 overlap by 29 nucleotides
DZA65_RS22475: DZA65_RS22475 - glycosyltransferase family 2 protein, at 4,859,622 to 4,861,331
_RS22475
DZA65_RS22480: DZA65_RS22480 - acyl-CoA thioesterase, at 4,861,328 to 4,861,756
_RS22480
DZA65_RS22485: DZA65_RS22485 - outer membrane lipoprotein carrier protein LolA, at 4,861,783 to 4,862,391
_RS22485
DZA65_RS22490: DZA65_RS22490 - hypothetical protein, at 4,862,363 to 4,864,681
_RS22490
Position (kb) 4861
4862 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4860.401 kb on + strand, within DZA65_RS22475 at 4860.401 kb on + strand, within DZA65_RS22475 at 4860.458 kb on + strand, within DZA65_RS22475 at 4860.489 kb on + strand, within DZA65_RS22475 at 4860.536 kb on - strand, within DZA65_RS22475 at 4860.553 kb on - strand, within DZA65_RS22475 at 4860.553 kb on - strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.597 kb on + strand, within DZA65_RS22475 at 4860.598 kb on - strand, within DZA65_RS22475 at 4860.598 kb on - strand, within DZA65_RS22475 at 4860.598 kb on - strand, within DZA65_RS22475 at 4860.598 kb on - strand, within DZA65_RS22475 at 4860.762 kb on - strand, within DZA65_RS22475 at 4860.825 kb on - strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4861.136 kb on - strand, within DZA65_RS22475 at 4861.143 kb on + strand, within DZA65_RS22475 at 4861.144 kb on - strand, within DZA65_RS22475 at 4861.221 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.505 kb on + strand, within DZA65_RS22480 at 4861.506 kb on - strand, within DZA65_RS22480 at 4861.506 kb on - strand, within DZA65_RS22480 at 4861.526 kb on - strand, within DZA65_RS22480 at 4861.538 kb on + strand, within DZA65_RS22480 at 4861.556 kb on + strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.665 kb on - strand, within DZA65_RS22480 at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.795 kb on - strand at 4861.843 kb on - strand at 4861.917 kb on + strand, within DZA65_RS22485 at 4861.918 kb on - strand, within DZA65_RS22485 at 4861.918 kb on - strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.069 kb on + strand at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.208 kb on - strand, within DZA65_RS22485 at 4862.310 kb on + strand, within DZA65_RS22485 at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.343 kb on + strand at 4862.343 kb on + strand at 4862.343 kb on + strand at 4862.344 kb on - strand at 4862.344 kb on - strand at 4862.344 kb on - strand at 4862.457 kb on + strand at 4862.457 kb on + strand at 4862.551 kb on + strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,860,401 + DZA65_RS22475 0.46 -2.0 4,860,401 + DZA65_RS22475 0.46 -1.5 4,860,458 + DZA65_RS22475 0.49 +0.9 4,860,489 + DZA65_RS22475 0.51 -1.2 4,860,536 - DZA65_RS22475 0.53 -0.2 4,860,553 - DZA65_RS22475 0.54 +0.9 4,860,553 - DZA65_RS22475 0.54 -0.9 4,860,597 + DZA65_RS22475 0.57 +0.1 4,860,597 + DZA65_RS22475 0.57 -0.9 4,860,597 + DZA65_RS22475 0.57 -2.0 4,860,597 + DZA65_RS22475 0.57 +0.4 4,860,597 + DZA65_RS22475 0.57 -0.6 4,860,597 + DZA65_RS22475 0.57 +0.3 4,860,597 + DZA65_RS22475 0.57 -1.2 4,860,597 + DZA65_RS22475 0.57 +0.2 4,860,598 - DZA65_RS22475 0.57 -4.0 4,860,598 - DZA65_RS22475 0.57 +0.3 4,860,598 - DZA65_RS22475 0.57 -1.2 4,860,598 - DZA65_RS22475 0.57 -0.9 4,860,762 - DZA65_RS22475 0.67 -1.0 4,860,825 - DZA65_RS22475 0.70 -0.7 4,860,925 + DZA65_RS22475 0.76 -0.5 4,860,925 + DZA65_RS22475 0.76 +0.2 4,860,925 + DZA65_RS22475 0.76 -0.9 4,860,925 + DZA65_RS22475 0.76 +0.1 4,860,925 + DZA65_RS22475 0.76 +1.2 4,861,136 - DZA65_RS22475 0.89 +0.7 4,861,143 + DZA65_RS22475 0.89 -0.1 4,861,144 - DZA65_RS22475 0.89 +0.1 4,861,221 + +0.4 4,861,325 + -3.2 4,861,325 + -0.9 4,861,325 + +0.3 4,861,325 + -2.0 4,861,325 + +0.7 4,861,325 + -0.0 4,861,325 + -0.9 4,861,325 + -1.5 4,861,326 - +0.2 4,861,326 - -1.1 4,861,326 - +1.1 4,861,326 - -0.1 4,861,326 - -2.9 4,861,424 + DZA65_RS22480 0.22 -1.6 4,861,424 + DZA65_RS22480 0.22 -1.8 4,861,424 + DZA65_RS22480 0.22 +1.3 4,861,424 + DZA65_RS22480 0.22 +0.5 4,861,469 + DZA65_RS22480 0.33 -1.5 4,861,469 + DZA65_RS22480 0.33 +0.1 4,861,469 + DZA65_RS22480 0.33 -0.3 4,861,469 + DZA65_RS22480 0.33 +1.1 4,861,469 + DZA65_RS22480 0.33 -0.8 4,861,469 + DZA65_RS22480 0.33 -0.9 4,861,470 - DZA65_RS22480 0.33 +0.1 4,861,470 - DZA65_RS22480 0.33 -0.4 4,861,470 - DZA65_RS22480 0.33 +0.5 4,861,470 - DZA65_RS22480 0.33 -0.2 4,861,470 - DZA65_RS22480 0.33 -2.3 4,861,470 - DZA65_RS22480 0.33 -0.6 4,861,505 + DZA65_RS22480 0.41 -1.1 4,861,506 - DZA65_RS22480 0.41 -1.9 4,861,506 - DZA65_RS22480 0.41 +1.1 4,861,526 - DZA65_RS22480 0.46 -1.1 4,861,538 + DZA65_RS22480 0.49 -0.3 4,861,556 + DZA65_RS22480 0.53 -0.4 4,861,557 - DZA65_RS22480 0.53 +0.6 4,861,557 - DZA65_RS22480 0.53 -1.0 4,861,557 - DZA65_RS22480 0.53 +0.3 4,861,557 - DZA65_RS22480 0.53 +0.6 4,861,557 - DZA65_RS22480 0.53 -0.3 4,861,557 - DZA65_RS22480 0.53 +0.5 4,861,664 + DZA65_RS22480 0.78 -0.5 4,861,664 + DZA65_RS22480 0.78 +2.0 4,861,664 + DZA65_RS22480 0.78 +1.3 4,861,665 - DZA65_RS22480 0.79 +0.6 4,861,787 + -0.1 4,861,787 + +0.2 4,861,787 + +0.2 4,861,787 + +0.3 4,861,787 + +0.0 4,861,787 + +1.1 4,861,788 - +1.3 4,861,788 - -0.2 4,861,788 - -1.3 4,861,788 - -0.1 4,861,788 - -2.0 4,861,788 - +0.5 4,861,788 - -1.9 4,861,795 - +0.4 4,861,843 - +1.1 4,861,917 + DZA65_RS22485 0.22 +0.7 4,861,918 - DZA65_RS22485 0.22 +0.4 4,861,918 - DZA65_RS22485 0.22 +0.5 4,862,034 + DZA65_RS22485 0.41 -0.1 4,862,034 + DZA65_RS22485 0.41 -2.2 4,862,034 + DZA65_RS22485 0.41 +1.0 4,862,035 - DZA65_RS22485 0.41 -1.5 4,862,035 - DZA65_RS22485 0.41 -0.5 4,862,035 - DZA65_RS22485 0.41 +0.1 4,862,035 - DZA65_RS22485 0.41 +0.1 4,862,069 + -0.9 4,862,069 + DZA65_RS22485 0.47 +0.2 4,862,069 + DZA65_RS22485 0.47 +0.1 4,862,069 + DZA65_RS22485 0.47 -0.0 4,862,208 - DZA65_RS22485 0.70 -0.8 4,862,310 + DZA65_RS22485 0.87 +0.6 4,862,340 + +1.6 4,862,340 + +1.5 4,862,340 + +0.6 4,862,340 + -0.8 4,862,341 - +1.4 4,862,341 - +0.9 4,862,341 - +0.3 4,862,341 - -0.6 4,862,341 - -0.5 4,862,343 + +2.0 4,862,343 + +1.9 4,862,343 + +0.6 4,862,344 - +0.0 4,862,344 - +0.4 4,862,344 - -1.2 4,862,457 + +0.5 4,862,457 + -2.0 4,862,551 + -0.7 4,862,552 - +1.1 4,862,552 - -1.3 4,862,552 - -0.6 4,862,552 - +0.0 4,862,552 - +0.1 4,862,552 - +0.4
Or see this region's nucleotide sequence