Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22010

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,758,510	+		DZA65_RS22005	0.63	-1.2
4,758,510	+		DZA65_RS22005	0.63	-1.2
4,758,511	-		DZA65_RS22005	0.63	-1.9
4,758,513	+		DZA65_RS22005	0.64	-0.6
4,758,514	-		DZA65_RS22005	0.64	+3.1
4,758,540	-		DZA65_RS22005	0.65	-0.0
4,758,540	-		DZA65_RS22005	0.65	-0.6
4,758,660	+		DZA65_RS22005	0.73	-0.6
4,758,799	-		DZA65_RS22005	0.83	+0.5
4,758,826	+		DZA65_RS22005	0.84	+1.2
4,758,827	-		DZA65_RS22005	0.84	-1.0
4,758,827	-		DZA65_RS22005	0.84	-1.9
4,758,933	-				-0.7
4,758,933	-				+1.7
4,758,933	-				+1.0
4,758,986	+				-1.6
4,759,001	-				-0.9
4,759,001	-				+0.8
4,759,062	+				+1.1
4,759,063	-				-0.8
4,759,070	-				-2.2
4,759,078	+				-0.5
4,759,078	+				+1.5
4,759,079	-				+0.4
4,759,079	-				-2.5
4,759,079	-				-0.7
4,759,079	-				+0.9
4,759,079	-				+0.1
4,759,079	-				+0.1
4,759,142	+				-0.2
4,759,142	+				-0.5
4,759,142	+				-1.2
4,759,142	+				-0.0
4,759,143	-				+0.1
4,759,152	+				-0.9
4,759,152	+				-1.5
4,759,153	-				+0.3
4,759,185	+				-1.3
4,759,319	+				-0.0
4,759,319	+				-1.8
4,759,320	-				-2.5
4,759,321	+				+0.7
4,759,368	+				+0.7
4,759,368	+				-0.1
4,759,368	+				-1.5
4,759,368	+				+2.5
4,759,369	-				-0.8
4,759,369	-				-1.4
4,759,369	-				-1.2
4,759,388	+				-1.7
4,759,388	+				+1.5
4,759,388	+				-1.2
4,759,388	+				+0.2
4,759,388	+				+0.9
4,759,388	+				+0.1
4,759,388	+				+0.1
4,759,388	+				+0.8
4,759,388	+				-1.2
4,759,388	+				-0.1
4,759,389	-				+1.3
4,759,389	-				+1.4
4,759,389	-				+0.3
4,759,389	-				+0.2
4,759,389	-				+0.2
4,759,389	-				-1.5
4,759,389	-				-0.7
4,759,538	-		DZA65_RS22010	0.14	-0.2
4,759,555	+		DZA65_RS22010	0.15	-0.8
4,759,555	+		DZA65_RS22010	0.15	+1.1
4,759,555	+		DZA65_RS22010	0.15	+0.4
4,759,556	-		DZA65_RS22010	0.16	-2.0
4,759,556	-		DZA65_RS22010	0.16	-1.6
4,759,556	-		DZA65_RS22010	0.16	+0.4
4,759,567	-		DZA65_RS22010	0.16	-1.5
4,759,567	-		DZA65_RS22010	0.16	-1.9
4,759,600	+		DZA65_RS22010	0.19	+0.3
4,759,648	+		DZA65_RS22010	0.23	-0.1
4,759,648	+		DZA65_RS22010	0.23	-1.5
4,759,649	-		DZA65_RS22010	0.23	-0.6
4,759,649	-		DZA65_RS22010	0.23	-1.8
4,759,649	-		DZA65_RS22010	0.23	+0.6
4,759,707	+		DZA65_RS22010	0.28	-1.2
4,759,707	+		DZA65_RS22010	0.28	-0.6
4,759,708	-		DZA65_RS22010	0.28	+0.2
4,759,734	+		DZA65_RS22010	0.31	-0.8
4,759,818	-		DZA65_RS22010	0.38	+1.6
4,759,818	-		DZA65_RS22010	0.38	+1.1
4,759,959	+		DZA65_RS22010	0.50	+0.3
4,759,959	+		DZA65_RS22010	0.50	-0.2
4,759,959	+		DZA65_RS22010	0.50	-1.3
4,759,959	+		DZA65_RS22010	0.50	+0.1
4,759,959	+		DZA65_RS22010	0.50	+1.1
4,759,960	-				-0.9
4,759,960	-		DZA65_RS22010	0.50	-2.5
4,760,049	+		DZA65_RS22010	0.57	-0.6
4,760,050	-		DZA65_RS22010	0.57	-0.7
4,760,050	-		DZA65_RS22010	0.57	+0.4
4,760,050	-		DZA65_RS22010	0.57	+1.1
4,760,058	+		DZA65_RS22010	0.58	-0.4
4,760,059	-		DZA65_RS22010	0.58	+1.3
4,760,105	-		DZA65_RS22010	0.62	+0.4
4,760,105	-		DZA65_RS22010	0.62	-0.5
4,760,211	+		DZA65_RS22010	0.71	-1.5
4,760,211	+		DZA65_RS22010	0.71	+0.8
4,760,212	-		DZA65_RS22010	0.71	+1.0
4,760,286	-		DZA65_RS22010	0.77	-2.0
4,760,286	-		DZA65_RS22010	0.77	-0.7
4,760,455	+				-2.6
4,760,455	+				-0.9
4,760,456	-				+1.1
4,760,456	-				+1.0
4,760,456	-				-0.0
4,760,456	-				-0.0
4,760,456	-				-0.1
4,760,500	+				+1.4
4,760,501	-				+1.5
4,760,593	+				-0.9
4,760,593	+				-0.7
4,760,593	+				-0.5
4,760,593	+				+0.8
4,760,593	+				-2.0
4,760,593	+				-1.7
4,760,593	+				-0.6
4,760,593	+				-0.5
4,760,593	+				+0.8
4,760,593	+				+0.1
4,760,593	+				-2.0
4,760,593	+				+0.1
4,760,593	+				-0.5
4,760,594	-				+0.1
4,760,594	-				+1.4
4,760,594	-				+1.2
4,760,594	-				-2.6
4,760,594	-				+0.6
4,760,594	-				+1.8
4,760,594	-				-2.3
4,760,594	-				-0.2
4,760,594	-				-0.5
4,760,594	-				+1.3
4,760,594	-				+1.3
4,760,594	-				+0.7
4,760,594	-				-1.0
4,760,594	-				+0.5
4,760,594	-				+0.8
4,760,594	-				-0.1
4,760,594	-				+0.8
4,760,594	-				-0.6
4,760,594	-				+2.3
4,760,594	-				+0.5
4,760,594	-				+0.7
4,760,613	+				-2.6
4,760,614	-				-1.7
4,760,632	+				-0.4
4,760,632	+				+0.5
4,760,633	-				-2.3
4,760,633	-				-0.3
4,760,633	-				-3.0
4,760,642	+				+0.4
4,760,662	+				-1.1
4,760,662	+				-1.0
4,760,662	+				-0.5
4,760,663	-				-1.2
4,760,696	+				-3.2
4,760,697	-				-1.3
4,760,697	-				-0.7
4,760,733	+				-2.0
4,760,786	+				+2.1
4,760,786	+				-1.1
4,760,787	-				-0.1
4,760,787	-				-0.7
4,760,787	-				+1.3
4,760,787	-				-0.2
4,760,911	+		DZA65_RS22015	0.18	+0.1
4,760,911	+		DZA65_RS22015	0.18	+0.2
4,760,912	-		DZA65_RS22015	0.18	-1.2
4,760,912	-		DZA65_RS22015	0.18	+0.2
4,760,912	-		DZA65_RS22015	0.18	+0.3
4,760,912	-		DZA65_RS22015	0.18	+0.5
4,760,912	-		DZA65_RS22015	0.18	-1.7
4,760,967	+		DZA65_RS22015	0.22	-0.2
4,760,967	+		DZA65_RS22015	0.22	+0.1
4,760,968	-		DZA65_RS22015	0.22	-1.3
4,760,968	-		DZA65_RS22015	0.22	+1.9
4,761,026	+		DZA65_RS22015	0.26	-1.5
4,761,026	+		DZA65_RS22015	0.26	+1.1
4,761,027	-		DZA65_RS22015	0.26	-0.2
4,761,027	-		DZA65_RS22015	0.26	-1.7
4,761,027	-		DZA65_RS22015	0.26	-2.0
4,761,059	+		DZA65_RS22015	0.28	-0.1
4,761,059	+		DZA65_RS22015	0.28	+0.1
4,761,060	-		DZA65_RS22015	0.28	-0.7
4,761,297	-		DZA65_RS22015	0.45	-0.9
4,761,297	-		DZA65_RS22015	0.45	-1.9
4,761,298	+				-0.9
4,761,299	-		DZA65_RS22015	0.45	+0.6
4,761,299	-		DZA65_RS22015	0.45	+0.7
4,761,324	-		DZA65_RS22015	0.46	-0.4
4,761,324	-		DZA65_RS22015	0.46	+1.5
4,761,379	+		DZA65_RS22015	0.50	-2.0
4,761,401	-		DZA65_RS22015	0.52	+0.2
4,761,431	+		DZA65_RS22015	0.54	-1.7
4,761,496	+		DZA65_RS22015	0.58	-0.8
4,761,521	-		DZA65_RS22015	0.60	-1.0
4,761,524	+		DZA65_RS22015	0.60	-0.8
4,761,524	+		DZA65_RS22015	0.60	+2.1
4,761,524	+		DZA65_RS22015	0.60	+0.1
4,761,524	+		DZA65_RS22015	0.60	+0.3
4,761,524	+		DZA65_RS22015	0.60	-0.5
4,761,525	-		DZA65_RS22015	0.60	-0.3
4,761,525	-		DZA65_RS22015	0.60	-0.2
4,761,525	-		DZA65_RS22015	0.60	-1.1
4,761,525	-		DZA65_RS22015	0.60	-0.5
4,761,525	-		DZA65_RS22015	0.60	+0.5
4,761,525	-		DZA65_RS22015	0.60	-2.5
4,761,525	-		DZA65_RS22015	0.60	+1.1
4,761,525	-		DZA65_RS22015	0.60	-1.7
4,761,525	-		DZA65_RS22015	0.60	-2.0
4,761,525	-		DZA65_RS22015	0.60	+1.3
4,761,525	-		DZA65_RS22015	0.60	-0.6
4,761,525	-		DZA65_RS22015	0.60	+0.7
4,761,525	-		DZA65_RS22015	0.60	+0.7
4,761,525	-		DZA65_RS22015	0.60	-0.8
4,761,525	-		DZA65_RS22015	0.60	-0.1
4,761,555	-		DZA65_RS22015	0.62	-1.2