Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20315 and DZA65_RS20320 are separated by 18 nucleotides DZA65_RS20320 and DZA65_RS20325 overlap by 8 nucleotides DZA65_RS20325 and DZA65_RS20330 are separated by 19 nucleotides DZA65_RS20330 and DZA65_RS20335 overlap by 29 nucleotides
DZA65_RS20315: DZA65_RS20315 - shikimate dehydrogenase, at 4,405,788 to 4,406,615
_RS20315
DZA65_RS20320: DZA65_RS20320 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 4,406,634 to 4,407,203
_RS20320
DZA65_RS20325: DZA65_RS20325 - hypothetical protein, at 4,407,196 to 4,407,753
_RS20325
DZA65_RS20330: DZA65_RS20330 - DUF494 domain-containing protein, at 4,407,773 to 4,408,246
_RS20330
DZA65_RS20335: DZA65_RS20335 - DNA-protecting protein DprA, at 4,408,218 to 4,409,351
_RS20335
Position (kb) 4407
4408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4406.628 kb on + strand at 4406.628 kb on + strand at 4406.628 kb on + strand at 4406.636 kb on - strand at 4407.246 kb on + strand at 4407.246 kb on + strand at 4407.246 kb on + strand at 4407.247 kb on - strand at 4407.247 kb on - strand at 4407.266 kb on - strand, within DZA65_RS20325 at 4407.266 kb on - strand, within DZA65_RS20325 at 4407.290 kb on - strand, within DZA65_RS20325 at 4407.312 kb on - strand, within DZA65_RS20325 at 4407.336 kb on + strand, within DZA65_RS20325 at 4407.337 kb on - strand, within DZA65_RS20325 at 4407.343 kb on + strand, within DZA65_RS20325 at 4407.344 kb on - strand, within DZA65_RS20325 at 4407.405 kb on + strand, within DZA65_RS20325 at 4407.406 kb on - strand, within DZA65_RS20325 at 4407.406 kb on - strand, within DZA65_RS20325 at 4407.445 kb on + strand, within DZA65_RS20325 at 4407.446 kb on - strand, within DZA65_RS20325 at 4407.480 kb on + strand, within DZA65_RS20325 at 4407.481 kb on - strand, within DZA65_RS20325 at 4407.498 kb on - strand, within DZA65_RS20325 at 4407.498 kb on - strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.501 kb on + strand, within DZA65_RS20325 at 4407.502 kb on - strand, within DZA65_RS20325 at 4407.502 kb on - strand, within DZA65_RS20325 at 4407.502 kb on - strand, within DZA65_RS20325 at 4407.525 kb on - strand, within DZA65_RS20325 at 4407.608 kb on + strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.609 kb on - strand, within DZA65_RS20325 at 4407.616 kb on - strand, within DZA65_RS20325 at 4407.627 kb on + strand, within DZA65_RS20325 at 4407.627 kb on + strand, within DZA65_RS20325 at 4407.628 kb on - strand, within DZA65_RS20325 at 4407.628 kb on - strand, within DZA65_RS20325 at 4407.628 kb on - strand, within DZA65_RS20325 at 4407.629 kb on + strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.630 kb on - strand, within DZA65_RS20325 at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.735 kb on + strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.736 kb on - strand at 4407.739 kb on + strand at 4407.739 kb on + strand at 4407.739 kb on + strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.740 kb on - strand at 4407.758 kb on + strand at 4407.759 kb on - strand at 4407.759 kb on - strand at 4407.784 kb on - strand at 4407.784 kb on - strand at 4407.806 kb on + strand at 4407.806 kb on + strand at 4407.806 kb on + strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.807 kb on - strand at 4407.879 kb on - strand, within DZA65_RS20330 at 4407.879 kb on - strand, within DZA65_RS20330 at 4407.879 kb on - strand, within DZA65_RS20330 at 4407.928 kb on + strand at 4407.929 kb on - strand, within DZA65_RS20330 at 4407.961 kb on + strand, within DZA65_RS20330 at 4407.962 kb on - strand, within DZA65_RS20330 at 4407.962 kb on - strand, within DZA65_RS20330 at 4407.962 kb on - strand, within DZA65_RS20330 at 4408.027 kb on + strand, within DZA65_RS20330 at 4408.027 kb on + strand, within DZA65_RS20330 at 4408.029 kb on + strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.030 kb on - strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.125 kb on + strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.126 kb on - strand, within DZA65_RS20330 at 4408.130 kb on - strand, within DZA65_RS20330 at 4408.130 kb on - strand, within DZA65_RS20330 at 4408.130 kb on - strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.174 kb on + strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.175 kb on - strand, within DZA65_RS20330 at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.212 kb on + strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.213 kb on - strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.227 kb on + strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.228 kb on - strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.235 kb on + strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.236 kb on - strand at 4408.260 kb on + strand at 4408.261 kb on - strand at 4408.261 kb on - strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.262 kb on + strand at 4408.263 kb on - strand at 4408.263 kb on - strand at 4408.263 kb on - strand at 4408.263 kb on - strand at 4408.270 kb on + strand at 4408.270 kb on + strand at 4408.271 kb on - strand at 4408.282 kb on - strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.302 kb on + strand at 4408.303 kb on - strand at 4408.303 kb on - strand at 4408.303 kb on - strand at 4408.303 kb on - strand at 4408.318 kb on - strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.322 kb on + strand at 4408.323 kb on - strand at 4408.323 kb on - strand at 4408.323 kb on - strand at 4408.323 kb on - strand at 4408.379 kb on + strand, within DZA65_RS20335 at 4408.379 kb on + strand, within DZA65_RS20335 at 4408.379 kb on + strand, within DZA65_RS20335 at 4408.380 kb on - strand, within DZA65_RS20335 at 4408.380 kb on - strand, within DZA65_RS20335 at 4408.392 kb on + strand, within DZA65_RS20335 at 4408.392 kb on + strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.393 kb on - strand, within DZA65_RS20335 at 4408.448 kb on + strand, within DZA65_RS20335 at 4408.554 kb on + strand, within DZA65_RS20335 at 4408.554 kb on + strand, within DZA65_RS20335 at 4408.555 kb on - strand, within DZA65_RS20335 at 4408.555 kb on - strand, within DZA65_RS20335 at 4408.568 kb on + strand, within DZA65_RS20335 at 4408.611 kb on + strand, within DZA65_RS20335 at 4408.611 kb on + strand, within DZA65_RS20335 at 4408.611 kb on + strand, within DZA65_RS20335 at 4408.612 kb on - strand, within DZA65_RS20335 at 4408.612 kb on - strand, within DZA65_RS20335 at 4408.637 kb on - strand, within DZA65_RS20335 at 4408.698 kb on + strand, within DZA65_RS20335 at 4408.698 kb on + strand, within DZA65_RS20335 at 4408.698 kb on + strand, within DZA65_RS20335 at 4408.699 kb on - strand, within DZA65_RS20335 at 4408.699 kb on - strand, within DZA65_RS20335 at 4408.712 kb on + strand, within DZA65_RS20335 at 4408.712 kb on + strand, within DZA65_RS20335 at 4408.713 kb on - strand, within DZA65_RS20335 at 4408.713 kb on - strand, within DZA65_RS20335 at 4408.713 kb on - strand, within DZA65_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,406,628 + -0.3 4,406,628 + -1.8 4,406,628 + +0.6 4,406,636 - +1.0 4,407,246 + -3.0 4,407,246 + +0.0 4,407,246 + +0.2 4,407,247 - -0.6 4,407,247 - -0.6 4,407,266 - DZA65_RS20325 0.13 +0.3 4,407,266 - DZA65_RS20325 0.13 -0.6 4,407,290 - DZA65_RS20325 0.17 -1.6 4,407,312 - DZA65_RS20325 0.21 +1.0 4,407,336 + DZA65_RS20325 0.25 -0.6 4,407,337 - DZA65_RS20325 0.25 +0.3 4,407,343 + DZA65_RS20325 0.26 -0.1 4,407,344 - DZA65_RS20325 0.27 +0.0 4,407,405 + DZA65_RS20325 0.37 +1.7 4,407,406 - DZA65_RS20325 0.38 +0.3 4,407,406 - DZA65_RS20325 0.38 +2.1 4,407,445 + DZA65_RS20325 0.45 -1.6 4,407,446 - DZA65_RS20325 0.45 +0.9 4,407,480 + DZA65_RS20325 0.51 +0.2 4,407,481 - DZA65_RS20325 0.51 -0.6 4,407,498 - DZA65_RS20325 0.54 -0.6 4,407,498 - DZA65_RS20325 0.54 +0.4 4,407,501 + DZA65_RS20325 0.55 +1.5 4,407,501 + DZA65_RS20325 0.55 -1.0 4,407,501 + DZA65_RS20325 0.55 -2.6 4,407,501 + DZA65_RS20325 0.55 +3.2 4,407,502 - DZA65_RS20325 0.55 -2.4 4,407,502 - DZA65_RS20325 0.55 +0.0 4,407,502 - DZA65_RS20325 0.55 -1.4 4,407,525 - DZA65_RS20325 0.59 +2.8 4,407,608 + DZA65_RS20325 0.74 -0.3 4,407,609 - DZA65_RS20325 0.74 -1.6 4,407,609 - DZA65_RS20325 0.74 -0.3 4,407,609 - DZA65_RS20325 0.74 +1.1 4,407,609 - DZA65_RS20325 0.74 +0.6 4,407,609 - DZA65_RS20325 0.74 +0.4 4,407,616 - DZA65_RS20325 0.75 +2.6 4,407,627 + DZA65_RS20325 0.77 -2.0 4,407,627 + DZA65_RS20325 0.77 -2.0 4,407,628 - DZA65_RS20325 0.77 +0.3 4,407,628 - DZA65_RS20325 0.77 -0.6 4,407,628 - DZA65_RS20325 0.77 +0.1 4,407,629 + DZA65_RS20325 0.78 -0.1 4,407,630 - DZA65_RS20325 0.78 -2.0 4,407,630 - DZA65_RS20325 0.78 +1.0 4,407,630 - DZA65_RS20325 0.78 +1.0 4,407,630 - DZA65_RS20325 0.78 +1.0 4,407,630 - DZA65_RS20325 0.78 -1.8 4,407,630 - DZA65_RS20325 0.78 -0.2 4,407,735 + +0.2 4,407,735 + +0.3 4,407,735 + +0.2 4,407,735 + -1.3 4,407,735 + +1.6 4,407,736 - +2.2 4,407,736 - -1.0 4,407,736 - +0.5 4,407,736 - +1.3 4,407,736 - -2.0 4,407,736 - -2.0 4,407,736 - +1.8 4,407,736 - -0.4 4,407,736 - -1.6 4,407,739 + -0.1 4,407,739 + +0.3 4,407,739 + -1.0 4,407,740 - +0.8 4,407,740 - +0.9 4,407,740 - +1.2 4,407,740 - +0.8 4,407,740 - +0.4 4,407,758 + +0.9 4,407,759 - -1.6 4,407,759 - +0.0 4,407,784 - +0.3 4,407,784 - +0.1 4,407,806 + +0.0 4,407,806 + -2.3 4,407,806 + -0.6 4,407,807 - -0.2 4,407,807 - -0.3 4,407,807 - +0.8 4,407,807 - -1.0 4,407,807 - -1.8 4,407,807 - +0.5 4,407,879 - DZA65_RS20330 0.22 +1.0 4,407,879 - DZA65_RS20330 0.22 -0.8 4,407,879 - DZA65_RS20330 0.22 +0.3 4,407,928 + +1.0 4,407,929 - DZA65_RS20330 0.33 +0.3 4,407,961 + DZA65_RS20330 0.40 +0.0 4,407,962 - DZA65_RS20330 0.40 +1.8 4,407,962 - DZA65_RS20330 0.40 -0.4 4,407,962 - DZA65_RS20330 0.40 +0.9 4,408,027 + DZA65_RS20330 0.54 -2.1 4,408,027 + DZA65_RS20330 0.54 +0.2 4,408,029 + DZA65_RS20330 0.54 +0.3 4,408,030 - DZA65_RS20330 0.54 -2.4 4,408,030 - DZA65_RS20330 0.54 -1.6 4,408,030 - DZA65_RS20330 0.54 +0.4 4,408,030 - DZA65_RS20330 0.54 +0.0 4,408,030 - DZA65_RS20330 0.54 +1.3 4,408,125 + DZA65_RS20330 0.74 +1.3 4,408,125 + DZA65_RS20330 0.74 +0.3 4,408,125 + DZA65_RS20330 0.74 +0.6 4,408,125 + DZA65_RS20330 0.74 +0.3 4,408,126 - DZA65_RS20330 0.74 -0.9 4,408,126 - DZA65_RS20330 0.74 -1.6 4,408,126 - DZA65_RS20330 0.74 +1.0 4,408,126 - DZA65_RS20330 0.74 -0.4 4,408,126 - DZA65_RS20330 0.74 +1.0 4,408,126 - +1.4 4,408,126 - DZA65_RS20330 0.74 +0.2 4,408,126 - DZA65_RS20330 0.74 +0.0 4,408,126 - DZA65_RS20330 0.74 -1.1 4,408,130 - DZA65_RS20330 0.75 +0.1 4,408,130 - DZA65_RS20330 0.75 +0.5 4,408,130 - DZA65_RS20330 0.75 -1.6 4,408,174 + DZA65_RS20330 0.85 +1.5 4,408,174 + DZA65_RS20330 0.85 +0.1 4,408,174 + DZA65_RS20330 0.85 +0.1 4,408,174 + DZA65_RS20330 0.85 +1.8 4,408,174 + DZA65_RS20330 0.85 -0.3 4,408,175 - DZA65_RS20330 0.85 +0.3 4,408,175 - DZA65_RS20330 0.85 -1.0 4,408,175 - DZA65_RS20330 0.85 -3.7 4,408,175 - DZA65_RS20330 0.85 -1.0 4,408,175 - DZA65_RS20330 0.85 +0.4 4,408,175 - DZA65_RS20330 0.85 +1.8 4,408,175 - DZA65_RS20330 0.85 -0.5 4,408,175 - DZA65_RS20330 0.85 +2.1 4,408,175 - DZA65_RS20330 0.85 -0.2 4,408,175 - DZA65_RS20330 0.85 -2.3 4,408,175 - DZA65_RS20330 0.85 -0.5 4,408,212 + -2.3 4,408,212 + -0.6 4,408,212 + -0.7 4,408,212 + +0.8 4,408,212 + +2.2 4,408,212 + +0.3 4,408,212 + -1.0 4,408,213 - +1.0 4,408,213 - -1.4 4,408,213 - +1.6 4,408,213 - +1.3 4,408,213 - +1.4 4,408,213 - -1.3 4,408,213 - -0.6 4,408,213 - +0.0 4,408,227 + -0.2 4,408,227 + -1.2 4,408,227 + -1.3 4,408,227 + -1.8 4,408,227 + -1.1 4,408,227 + -0.6 4,408,227 + +0.2 4,408,227 + -0.4 4,408,228 - +1.8 4,408,228 - -2.4 4,408,228 - -2.6 4,408,228 - +0.4 4,408,228 - -0.2 4,408,228 - +1.0 4,408,228 - -0.2 4,408,228 - +0.1 4,408,228 - -1.1 4,408,235 + -2.3 4,408,235 + +0.5 4,408,235 + +0.7 4,408,235 + -1.1 4,408,235 + +1.6 4,408,235 + +0.4 4,408,236 - -1.0 4,408,236 - +0.7 4,408,236 - -1.6 4,408,236 - -1.6 4,408,236 - -1.2 4,408,236 - -2.3 4,408,236 - -0.7 4,408,236 - +0.8 4,408,236 - +1.1 4,408,260 + +0.5 4,408,261 - +1.3 4,408,261 - -1.0 4,408,262 + -1.7 4,408,262 + +0.0 4,408,262 + +0.3 4,408,262 + -0.6 4,408,262 + -0.8 4,408,263 - -0.1 4,408,263 - -0.5 4,408,263 - -0.6 4,408,263 - +0.7 4,408,270 + -0.2 4,408,270 + +0.7 4,408,271 - +0.7 4,408,282 - +0.4 4,408,302 + +2.6 4,408,302 + -1.9 4,408,302 + -1.6 4,408,302 + -0.3 4,408,302 + -1.0 4,408,303 - -1.6 4,408,303 - +1.4 4,408,303 - -0.6 4,408,303 - -1.6 4,408,318 - +2.3 4,408,322 + +0.6 4,408,322 + +0.0 4,408,322 + +2.5 4,408,322 + -1.1 4,408,322 + -1.3 4,408,323 - +5.2 4,408,323 - -1.6 4,408,323 - +1.2 4,408,323 - -1.1 4,408,379 + DZA65_RS20335 0.14 +0.0 4,408,379 + DZA65_RS20335 0.14 -0.3 4,408,379 + DZA65_RS20335 0.14 -0.6 4,408,380 - DZA65_RS20335 0.14 -0.6 4,408,380 - DZA65_RS20335 0.14 +1.5 4,408,392 + DZA65_RS20335 0.15 -0.9 4,408,392 + DZA65_RS20335 0.15 -1.3 4,408,393 - DZA65_RS20335 0.15 +0.0 4,408,393 - DZA65_RS20335 0.15 -1.8 4,408,393 - DZA65_RS20335 0.15 +0.4 4,408,393 - DZA65_RS20335 0.15 -1.6 4,408,448 + DZA65_RS20335 0.20 -0.5 4,408,554 + DZA65_RS20335 0.30 +1.0 4,408,554 + DZA65_RS20335 0.30 +1.6 4,408,555 - DZA65_RS20335 0.30 +2.0 4,408,555 - DZA65_RS20335 0.30 -0.9 4,408,568 + DZA65_RS20335 0.31 -0.2 4,408,611 + DZA65_RS20335 0.35 -0.1 4,408,611 + DZA65_RS20335 0.35 -0.3 4,408,611 + DZA65_RS20335 0.35 +1.0 4,408,612 - DZA65_RS20335 0.35 -0.2 4,408,612 - DZA65_RS20335 0.35 +0.9 4,408,637 - DZA65_RS20335 0.37 -1.3 4,408,698 + DZA65_RS20335 0.42 -1.0 4,408,698 + DZA65_RS20335 0.42 +0.9 4,408,698 + DZA65_RS20335 0.42 +0.0 4,408,699 - DZA65_RS20335 0.42 -0.6 4,408,699 - DZA65_RS20335 0.42 -2.6 4,408,712 + DZA65_RS20335 0.44 +0.0 4,408,712 + DZA65_RS20335 0.44 +1.0 4,408,713 - DZA65_RS20335 0.44 +1.0 4,408,713 - DZA65_RS20335 0.44 +0.0 4,408,713 - DZA65_RS20335 0.44 -1.2
Or see this region's nucleotide sequence